assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913415.1_ASM991341v1	NZ_CP047876	Escherichia coli strain LD22-1 chromosome, complete genome	1	619456-619573	1	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP047876.1_619646_619811_-	NA|115aa|up_9|NZ_CP047876.1_607177_607522_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP047876.1_607710_608649_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP047876.1_608747_609737_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP047876.1_609758_611090_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP047876.1_611115_612324_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP047876.1_612357_614652_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP047876.1_614665_615055_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP047876.1_615126_616491_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP047876.1_616765_618097_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP047876.1_618124_619435_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP047876.1_619646_619811_-	NA	NA|234aa|down_1|NZ_CP047876.1_619833_620535_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP047876.1_620639_621536_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP047876.1_621586_621943_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP047876.1_622184_622550_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP047876.1_622842_623829_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP047876.1_623898_624381_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP047876.1_624476_624776_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP047876.1_624765_625170_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP047876.1_625172_625478_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_009913415.1_ASM991341v1	NZ_CP047876	Escherichia coli strain LD22-1 chromosome, complete genome	2	1052551-1053677	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	18,18,18	18	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|121aa|up_3|NZ_CP047876.1_1049447_1049810_-,NA	NA|745aa|up_9|NZ_CP047876.1_1042383_1044618_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_8|NZ_CP047876.1_1044695_1044944_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_7|NZ_CP047876.1_1044943_1045279_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_6|NZ_CP047876.1_1045349_1046141_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_5|NZ_CP047876.1_1046368_1048006_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_4|NZ_CP047876.1_1048093_1049392_+	PRK00077, eno, enolase; Provisional	NA|121aa|up_3|NZ_CP047876.1_1049447_1049810_-	NA	NA|302aa|up_2|NZ_CP047876.1_1049845_1050751_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|201aa|up_1|NZ_CP047876.1_1050764_1051367_-	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|224aa|up_0|NZ_CP047876.1_1051539_1052211_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|122aa|down_0|NZ_CP047876.1_1054909_1055275_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|NZ_CP047876.1_1055590_1057390_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|NZ_CP047876.1_1057389_1059102_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_3|NZ_CP047876.1_1059175_1059910_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|down_4|NZ_CP047876.1_1060174_1060327_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|down_5|NZ_CP047876.1_1060520_1063220_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|down_6|NZ_CP047876.1_1063317_1064880_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|178aa|down_7|NZ_CP047876.1_1064876_1065410_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|down_8|NZ_CP047876.1_1065424_1066498_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|down_9|NZ_CP047876.1_1066508_1067255_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_009913415.1_ASM991341v1	NZ_CP047876	Escherichia coli strain LD22-1 chromosome, complete genome	3	1069194-1069894	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,11	11	TypeI-E	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|245aa|up_9|NZ_CP047876.1_1059175_1059910_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP047876.1_1060174_1060327_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP047876.1_1060520_1063220_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP047876.1_1063317_1064880_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|178aa|up_5|NZ_CP047876.1_1064876_1065410_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|358aa|up_4|NZ_CP047876.1_1065424_1066498_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP047876.1_1066508_1067255_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP047876.1_1067236_1067887_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP047876.1_1067883_1068807_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP047876.1_1068803_1069097_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP047876.1_1069976_1071014_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP047876.1_1071265_1072174_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP047876.1_1072175_1073603_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP047876.1_1073602_1074208_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP047876.1_1074257_1074581_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP047876.1_1074774_1075086_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP047876.1_1075104_1075815_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP047876.1_1075814_1076294_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP047876.1_1076290_1077340_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP047876.1_1077320_1078082_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009913415.1_ASM991341v1	NZ_CP047876	Escherichia coli strain LD22-1 chromosome, complete genome	4	2164539-2164662	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP047876.1_2173558_2173648_+	NA|471aa|up_9|NZ_CP047876.1_2153992_2155405_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP047876.1_2155961_2156171_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP047876.1_2156626_2157253_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP047876.1_2157273_2159376_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP047876.1_2159379_2160027_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP047876.1_2160090_2160759_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP047876.1_2160755_2161541_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP047876.1_2161544_2162357_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP047876.1_2162368_2163973_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP047876.1_2164098_2164404_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP047876.1_2164976_2166233_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP047876.1_2166273_2167647_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP047876.1_2167861_2168503_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP047876.1_2168542_2169691_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP047876.1_2169981_2171193_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP047876.1_2171305_2172238_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP047876.1_2172234_2173260_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP047876.1_2173558_2173648_+	NA	NA|390aa|down_8|NZ_CP047876.1_2173813_2174983_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP047876.1_2175128_2175710_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009913415.1_ASM991341v1	NZ_CP047876	Escherichia coli strain LD22-1 chromosome, complete genome	5	2202062-2202193	5	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CTGTTGCTGTTCCAGCTTGCGCGCTTTGGCACGGGC	36	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|110aa|up_9|NZ_CP047876.1_2192693_2193023_+	PRK11372, PRK11372, C-type lysozyme inhibitor	NA|219aa|up_8|NZ_CP047876.1_2193081_2193738_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|425aa|up_7|NZ_CP047876.1_2193866_2195141_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|287aa|up_6|NZ_CP047876.1_2195202_2196063_+	PRK05756, PRK05756, pyridoxal kinase PdxY	NA|202aa|up_5|NZ_CP047876.1_2196106_2196712_-	PRK10542, PRK10542, glutathionine S-transferase; Provisional	NA|501aa|up_4|NZ_CP047876.1_2196817_2198320_-	PRK09584, tppB, dipeptide/tripeptide permease DtpA	NA|212aa|up_3|NZ_CP047876.1_2198930_2199566_-	PRK10702, PRK10702, endonuclease III; Provisional	NA|232aa|up_2|NZ_CP047876.1_2199565_2200261_-	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|207aa|up_1|NZ_CP047876.1_2200264_2200885_-	PRK01908, PRK01908, electron transport complex protein RnfG; Validated	NA|353aa|up_0|NZ_CP047876.1_2200888_2201947_-	PRK00816, rnfD, electron transport complex protein RnfD; Reviewed	NA|193aa|down_0|NZ_CP047876.1_2203874_2204453_-	PRK05113, PRK05113, electron transport complex protein RnfB; Provisional	NA|194aa|down_1|NZ_CP047876.1_2204452_2205034_-	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|147aa|down_2|NZ_CP047876.1_2205110_2205551_-	pfam10754, DUF2569, Protein of unknown function (DUF2569)	NA|72aa|down_3|NZ_CP047876.1_2205636_2205852_-	PRK10391, PRK10391, transcription modulator YdgT	NA|42aa|down_4|NZ_CP047876.1_2206124_2206250_-	NF033231, small_Blr, division septum protein Blr	NA|347aa|down_5|NZ_CP047876.1_2206492_2207533_+	PRK11579, PRK11579, putative oxidoreductase; Provisional	NA|334aa|down_6|NZ_CP047876.1_2207567_2208569_-	PRK09358, PRK09358, adenosine deaminase; Provisional	NA|391aa|down_7|NZ_CP047876.1_2208672_2209845_-	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]	NA|531aa|down_8|NZ_CP047876.1_2209854_2211447_-	PRK10110, PRK10110, PTS maltose transporter subunit IICB	NA|343aa|down_9|NZ_CP047876.1_2211621_2212650_+	PRK10014, PRK10014, DNA-binding transcriptional repressor MalI; Provisional
GCF_009913415.1_ASM991341v1	NZ_CP047876	Escherichia coli strain LD22-1 chromosome, complete genome	6	2836983-2837074	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|70aa|up_9|NZ_CP047876.1_2826233_2826443_-,NA	NA|70aa|up_9|NZ_CP047876.1_2826233_2826443_-	NA	NA|1321aa|up_8|NZ_CP047876.1_2826497_2830460_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP047876.1_2830499_2831138_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP047876.1_2831425_2832517_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP047876.1_2832516_2833209_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP047876.1_2833220_2833607_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP047876.1_2833614_2834415_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP047876.1_2834424_2835015_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP047876.1_2835025_2835520_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP047876.1_2835540_2836869_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP047876.1_2837494_2838091_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP047876.1_2838111_2838339_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP047876.1_2838376_2839618_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|117aa|down_3|NZ_CP047876.1_2839910_2840261_-	PRK09784, PRK09784, YccE family protein	NA|273aa|down_4|NZ_CP047876.1_2840276_2841095_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_5|NZ_CP047876.1_2841427_2842348_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_6|NZ_CP047876.1_2842347_2842653_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_7|NZ_CP047876.1_2842745_2843345_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_8|NZ_CP047876.1_2843341_2845888_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_9|NZ_CP047876.1_2845887_2847060_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC
