bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	1.1|411008|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.970	33	1	0	1	33	681014	680982	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	1.08e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	680982-681014	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	1.1|411008|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.970	33	1	0	1	33	1243228	1243260	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	1.08e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	1243228-1243260	TGGGCCCCAACACAGAGAAATTGGATTTCCAAT	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2.1|1200023|34|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	97.059	34	1	0	1	34	681015	680982	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	4.10e-09	52.3	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT	680982-681015	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	3.1|1248763|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	100.000	31	0	0	1	31	1755096	1755066	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	9.22e-09	50.7	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1755066-1755096	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	0
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	3.1|1248763|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.774	31	1	0	1	31	376554	376584	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	8.30e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	376554-376584	GGCAATGGAAGTTGGCGGGGCCCCAACACAG	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	3.1|1248763|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.774	31	1	0	1	31	1755151	1755121	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	8.30e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1755121-1755151	CTGTGTTGGGGCCCCGCCAACTTGCATTACC	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	5.1|2304874|46|NZ_CP047863|PILER-CR	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	95.652	46	2	0	1	46	2301350	2301395	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	1.56e-13	68.2	1.0	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA	2301350-2301395	ACAAAGATAAACCTAATTATCAATTCGGTGGACACAATAGTGTTGA	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	5.2|2304937|37|NZ_CP047863|PILER-CR	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	94.595	37	2	0	1	37	2301413	2301449	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	1.71e-09	53.9	1.0	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC	2301413-2301449	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	6.1|2380427|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.970	33	1	0	1	33	1199710	1199742	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	1.08e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1199710-1199742	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	6.1|2380427|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.970	33	1	0	1	33	1235929	1235961	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	1.08e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1235929-1235961	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	6.1|2380427|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.939	33	2	0	1	33	2772341	2772309	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	9.68e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	2772309-2772341	CATTATTGTAAGCTGACTTTCCGCCAGCCTCTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	6.1|2380427|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.939	33	2	0	1	33	1235985	1236017	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	9.68e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1235985-1236017	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	6.1|2380427|33|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.939	33	2	0	1	33	1236041	1236073	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	9.68e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1236041-1236073	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.774	31	1	0	1	31	1235989	1236019	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	8.30e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1235989-1236019	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	96.774	31	1	0	1	31	1236045	1236075	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	8.30e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1236045-1236075	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	396402	396372	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	396372-396402	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	681056	681026	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	681026-681056	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	887156	887126	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	887126-887156	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	1416704	1416674	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1416674-1416704	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	1678761	1678731	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1678731-1678761	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	80559	80589	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	80559-80589	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	592478	592508	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	592478-592508	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	592594	592624	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	592594-592624	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	989717	989747	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	989717-989747	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	1199714	1199744	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1199714-1199744	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	1235933	1235963	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1235933-1235963	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	1976920	1976950	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1976920-1976950	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	7.1|2545217|31|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	93.548	31	2	0	1	31	2556018	2556048	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	7.47e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2556018-2556048	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	10.1|2796351|34|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	100.000	34	0	0	1	34	892757	892724	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	4.55e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	892724-892757	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	10.1|2796351|34|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	100.000	34	0	0	1	34	1248785	1248818	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	4.55e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	1248785-1248818	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	10.1|2796351|34|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	97.059	34	1	0	1	34	284330	284297	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	4.10e-09	52.3	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	284297-284330	TTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGG	1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	10.1|2796351|34|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	94.118	34	2	0	1	34	676608	676641	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	3.69e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	676608-676641	CCAACACAGAGAATTTCGATAAGAAATTCCACAA	2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	10.1|2796351|34|NZ_CP047863|CRISPRCasFinder	NZ_CP047863.1	Staphylococcus aureus strain UP_1106 chromosome, complete genome	94.118	34	2	0	1	34	2106570	2106603	410982-411066|1199999-1200080|1248739-1248817|1639922-1640024|2304857-2304990|2380404-2380482|2545192-2545272|2654746-2654831|2667071-2667152|2796327-2796408	3.69e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	2106570-2106603	CCAACAAAAAGAATTTCGAAAAGAAATTCTACAA	2
