The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	0	25609	2819688	protease,portal,head,capsid,tail,holin,terminase	Staphylococcus_phage(100.0%)	28	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|6484_7129_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_000504566.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	97.0	0.0e+00
WP_000567396.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_000582152.1|14065_17848_+	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
WP_001000058.1|17840_17993_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262621.1|18038_18326_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|18381_18756_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034846.1|19167_19950_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_011447039.1|20152_20329_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20381_20489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20540_20795_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861026.1|20806_21562_+	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
WP_000920042.1|21752_22244_+	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000727645.1|23319_23769_-	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000702262.1|24451_24802_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24854_25115_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|25429_25609_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	31218	33665	2819688		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991306.1|31218_32115_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000645727.1|32115_32796_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763043.1|32792_33665_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
>prophage 3
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	39428	39830	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|39428_39830_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 4
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	44026	46053	2819688		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|44026_44587_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275727.1|44955_46053_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
>prophage 5
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	50083	52367	2819688		Bacillus_virus(100.0%)	2	NA	NA
WP_000284436.1|50083_51553_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000040866.1|51545_52367_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 6
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	56068	62835	2819688		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|56068_57364_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|57472_57775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272056.1|57946_58639_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|58635_60828_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774556.1|60831_62835_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
>prophage 7
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	70009	75038	2819688		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|70009_70957_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147865.1|71037_72399_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.6	1.4e-103
WP_000548781.1|72568_73099_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140172.1|73345_74416_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|74483_75038_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	78490	78904	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001557448.1|78490_78904_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.3	6.7e-17
>prophage 9
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	83958	84588	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|83958_84588_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	100068	101805	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|100068_101805_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 11
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	115042	223594	2819688	transposase,tRNA,protease	Staphylococcus_phage(92.73%)	101	NA	NA
WP_001557163.1|115042_116362_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|116945_118007_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649908.1|118264_119722_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|119708_120437_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|120572_121715_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|121719_122190_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|122348_122948_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|122972_123125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|123672_124068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116228.1|124263_125649_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|126101_126923_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437969.1|127085_128198_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045135.1|128219_128843_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|129198_129663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992518.1|129841_130966_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|131034_131379_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|131917_132016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|132306_133503_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584630.1|133492_136429_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|136425_137367_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|137487_138450_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|138654_139212_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|139946_140312_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|140453_140876_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|141009_141750_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551836.1|141742_142966_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|143089_143593_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|143755_143866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|143855_144893_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|144950_145874_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167542.1|145897_147298_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|147620_148175_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_010922839.1|149534_150317_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821658.1|150597_151317_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|151351_152080_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_001236362.1|153043_153799_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000736709.1|154081_154858_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848318.1|155409_156186_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|156206_156443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001253432.1|156520_157015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000206343.1|157848_158637_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
WP_000473596.1|159999_160935_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|160936_161920_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|162289_163081_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|163085_163559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469591.1|163814_164033_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_001092780.1|164505_165087_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_001039427.1|166051_166759_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001039454.1|166883_167606_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001038872.1|167663_168383_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001038704.1|168503_169223_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|169171_169279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|169380_170100_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001791797.1|170162_170297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001793440.1|170277_172017_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_000072627.1|172009_173239_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001792025.1|174314_174416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|174538_174634_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414216.1|175988_176561_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_000627540.1|176661_177003_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000669024.1|177043_177670_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000070642.1|177744_178740_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_001795210.1|178820_179471_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_012840523.1|179773_180229_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348364.1|180387_181866_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778528.1|181870_182872_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000718107.1|182868_183126_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|183191_183665_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001822900.1|183669_184416_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|184793_186386_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933820.1|186757_187954_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366163.1|188075_188984_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453306.1|189195_190029_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000623470.1|192025_192379_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|192375_192741_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|192996_193299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|193558_194272_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168903.1|194711_195347_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|195642_196086_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|196072_196516_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|196628_197099_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|197297_197522_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|197797_198652_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|198738_200031_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|200030_200345_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|200867_202370_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384185.1|202862_203894_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493887.1|203900_204533_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_160199404.1|204543_205725_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.2	1.6e-225
WP_001008549.1|205737_206202_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196362.1|206323_207325_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|207435_207555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|207557_208385_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|208956_209358_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|209480_210044_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|210040_210994_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|211103_212285_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_001108730.1|212575_214990_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836461.1|215011_215323_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001050574.1|215648_222209_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	2.3e-305
WP_000285020.1|222325_223594_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
>prophage 12
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	234999	240327	2819688		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|234999_235857_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|235885_236482_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118314.1|236502_240327_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 13
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	249067	250774	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862096.1|249067_250774_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	8.0e-274
>prophage 14
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	257378	260009	2819688	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|257378_258641_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|258734_260009_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 15
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	263778	267911	2819688		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808849.1|263778_265383_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291420.1|265369_266527_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553924.1|266641_267088_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174280.1|267167_267911_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 16
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	285503	288701	2819688		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226918.1|285503_288701_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.5	7.2e-135
>prophage 17
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	293634	295392	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|293634_295392_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 18
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	300277	308441	2819688		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|300277_300982_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|300981_302643_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849428.1|303141_304629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038317.1|304922_307553_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114454.1|307568_308441_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
>prophage 19
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	312356	323509	2819688	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|312356_313277_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|313369_313492_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|313689_315627_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049145.1|316052_317546_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|317774_318302_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|318330_318531_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|318577_318934_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|319075_319684_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280022.1|319702_320632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|320636_320747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031783601.1|320794_322096_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|322246_323509_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 20
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	333076	339723	2819688	transposase,tRNA	Catovirus(50.0%)	5	NA	NA
WP_000425353.1|333076_335707_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
WP_001108346.1|335719_336991_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000261115.1|337260_337968_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_000692869.1|337964_338519_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_000868132.1|338637_339723_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
>prophage 21
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	343054	343786	2819688		Streptococcus_phage(100.0%)	1	NA	NA
WP_001072201.1|343054_343786_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
>prophage 22
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	352353	387966	2819688	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005768.1|352353_353358_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|353359_354385_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|354407_355547_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|355565_355826_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|356100_358380_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595011.1|358582_360856_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|360877_361396_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058587.1|361823_364013_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|364024_364477_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|364473_365349_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|365809_367072_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|367087_368854_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|369186_369315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|369314_370088_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102726.1|370248_371523_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.5	3.1e-105
WP_000704122.1|371607_372030_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|372129_372312_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|372351_372498_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985878.1|372734_373748_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409157.1|374059_375202_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
WP_000066097.1|375202_376321_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567017.1|377015_377684_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283312.1|377685_380163_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734075.1|380505_383136_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|383198_383459_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|383462_383891_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|383905_384214_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342258.1|384498_385137_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	3.2e-10
WP_000137772.1|385139_386063_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|386074_387343_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|387342_387966_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 23
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	394638	395859	2819688		Lactococcus_phage(100.0%)	1	NA	NA
WP_000542320.1|394638_395859_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	2.2e-52
>prophage 24
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	404645	410809	2819688		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|404645_405107_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953309.1|405165_407313_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282563.1|407369_408344_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|408388_408640_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|408985_410809_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 25
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	414303	417411	2819688		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|414303_416136_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|416271_417411_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 26
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	423881	424829	2819688		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|423881_424829_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 27
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	427882	441628	2819688	tRNA	Klosneuvirus(28.57%)	13	NA	NA
WP_001030080.1|427882_429274_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001797828.1|429608_430232_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|430242_431061_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217257.1|431121_432939_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
WP_001283055.1|433162_434269_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624577.1|434399_435077_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683940.1|435079_436180_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_001062177.1|436293_437640_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|437649_438540_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|438665_439451_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564315.1|439492_440356_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|440342_440753_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|441028_441628_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 28
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	447801	448425	2819688		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|447801_448425_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 29
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	453969	456781	2819688		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019691.1|453969_455316_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.2	1.7e-61
WP_000202188.1|455308_456781_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 30
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	464281	470852	2819688		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|464281_465619_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|465611_465842_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183383.1|465819_466701_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	2.0e-10
WP_001124985.1|467132_467585_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942210.1|467600_469280_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|469430_470852_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 31
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	477681	479088	2819688		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|477681_479088_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 32
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	485514	486999	2819688		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|485514_486999_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 33
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	490526	502136	2819688		Klosneuvirus(16.67%)	12	NA	NA
WP_001171335.1|490526_491435_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	32.0	4.4e-05
WP_000365240.1|491516_492059_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000392691.1|492163_492613_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000447733.1|492661_493549_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183429.1|493626_494133_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|494224_494956_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368656.1|494948_495491_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|495483_496221_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|496353_497079_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_160199405.1|497059_498811_+	cell wall metabolism sensor histidine kinase WalK	NA	A0A1V0SGX0	Hokovirus	33.2	2.9e-21
WP_001557355.1|499054_499981_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033761.1|499973_502136_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	2.7e-109
>prophage 34
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	506564	509243	2819688		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|506564_506813_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|506920_507874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902099.1|507863_509243_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
>prophage 35
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	518667	524134	2819688		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|518667_518940_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|519370_519943_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|519945_520671_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001817755.1|520687_521632_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|521723_522173_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|522381_522582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269921.1|522967_524134_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
>prophage 36
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	527796	528372	2819688		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|527796_528372_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 37
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	531744	539250	2819688	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361540.1|531744_532947_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000049921.1|532933_533905_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|533928_536622_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858779.1|536943_538236_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000362218.1|538563_539250_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
>prophage 38
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	542990	543617	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|542990_543617_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 39
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	552942	553821	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|552942_553821_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 40
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	592772	602162	2819688		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|592772_593477_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|593721_593916_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|593927_594179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404645.1|594216_595341_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|595356_595794_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934894.1|596217_597174_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|597373_597853_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|597867_598707_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159903.1|598792_599326_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|599318_599747_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473653.1|599758_600259_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|600258_600480_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342132.1|600671_602162_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
>prophage 41
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	605572	607584	2819688		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|605572_606232_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|606228_607584_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 42
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	613749	614541	2819688		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|613749_614541_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 43
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	618081	623112	2819688	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|618081_619218_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|619249_619879_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|619897_620167_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|620329_620638_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|620808_621009_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|621205_621607_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|621846_623112_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 44
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	631159	632761	2819688		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|631159_632761_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 45
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	637850	641304	2819688		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|637850_638702_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|638708_639350_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|639489_641304_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 46
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	644718	645420	2819688		Tupanvirus(100.0%)	1	NA	NA
WP_000571259.1|644718_645420_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.0e-13
>prophage 47
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	653516	655871	2819688		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153613.1|653516_654299_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	2.7e-27
WP_000173833.1|654300_655299_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.9	8.5e-34
WP_000604816.1|655304_655871_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 48
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	660189	661452	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|660189_661452_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 49
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	671111	675505	2819688		Bacillus_phage(50.0%)	2	NA	NA
WP_001289546.1|671111_673514_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.4	1.8e-93
WP_031771138.1|673513_675505_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 50
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	681496	683143	2819688		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|681496_683143_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 51
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	686812	687934	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691301.1|686812_687934_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 52
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	692084	697740	2819688		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|692084_692708_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380730.1|693087_693951_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|694024_694129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688122.1|694125_695103_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|695259_695529_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|695982_696132_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|696222_697740_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 53
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	707878	708412	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000841346.1|707878_708412_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
>prophage 54
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	716537	720841	2819688	head	Staphylococcus_phage(80.0%)	8	NA	NA
WP_000899334.1|716537_716774_-|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.6	2.3e-22
WP_000956747.1|716819_717071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|717198_717303_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|717813_717999_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|718422_718533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|719232_719439_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001795785.1|719732_719957_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	5.0e-19
WP_001791958.1|720643_720841_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.1e-09
>prophage 55
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	725910	726387	2819688		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|725910_726387_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 56
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	732329	738811	2819688		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|732329_733148_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|733622_734165_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516269.1|734170_736180_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.0	4.8e-60
WP_000073352.1|736192_738811_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 57
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	748225	749269	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|748225_749269_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 58
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	753467	759008	2819688		Bacillus_virus(33.33%)	4	NA	NA
WP_000664775.1|753467_754754_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.4	7.9e-16
WP_000089941.1|754753_756019_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|756049_756763_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001811366.1|756767_759008_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 59
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	764148	775961	2819688	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864190.1|764148_765120_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282298.1|765134_766052_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|766220_766571_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|766956_769074_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|769078_769396_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|769392_769677_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097460.1|769697_770873_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036633.1|770893_771361_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001801936.1|771650_775961_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 60
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	780234	781005	2819688		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|780234_781005_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 61
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	785784	799458	2819688	tRNA,protease	Erwinia_phage(16.67%)	10	NA	NA
WP_000379054.1|785784_787188_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|787253_787799_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015601.1|787795_788692_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	3.6e-31
WP_000195254.1|789109_790417_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|790572_792648_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000672869.1|793868_795113_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041666.1|795140_796259_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110253.1|796485_797394_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|797415_798582_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176393.1|798690_799458_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 62
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	812842	815092	2819688		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|812842_813574_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|813689_813923_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|814357_815092_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 63
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	825462	827457	2819688		Moumouvirus(100.0%)	1	NA	NA
WP_000579563.1|825462_827457_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 64
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	830604	831540	2819688	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|830604_831540_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 65
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	836552	838809	2819688		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|836552_837752_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|837967_838186_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|838185_838809_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 66
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	842123	842735	2819688		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|842123_842735_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 67
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	846702	851313	2819688		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|846702_847803_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|847804_849079_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|849096_849978_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|850005_851313_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 68
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	855777	858531	2819688	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|855777_858531_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 69
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	878114	878303	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245796.1|878114_878303_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	2.5e-19
>prophage 70
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	887319	889279	2819688		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|887319_887544_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|887500_887647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857488.1|888319_889279_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.3	7.4e-35
>prophage 71
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	904909	909467	2819688		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|904909_905224_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249272.1|905396_907745_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	3.2e-15
WP_000161938.1|907754_909467_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
>prophage 72
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	914469	915528	2819688	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|914469_915528_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 73
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	927474	930382	2819688		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|927474_927957_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|927958_928501_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|928570_928960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|928962_929217_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757575.1|929455_930382_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	2.2e-12
>prophage 74
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	941899	943747	2819688		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182653.1|941899_943747_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 75
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	951879	960712	2819688		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|951879_952974_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|952986_953526_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|953669_953945_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|954112_955519_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863439.1|955522_956815_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|956905_957883_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|957886_958999_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668336.1|959169_959796_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957037.1|960160_960712_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.0	1.6e-13
>prophage 76
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	966724	971104	2819688		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|966724_966958_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040051.1|967194_968913_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|968915_969182_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|969335_969878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685067.1|969931_971104_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
>prophage 77
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	974535	989297	2819688		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921965.1|974535_975936_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|975928_976735_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101899.1|977001_978249_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709277.1|978270_979749_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_000238669.1|979763_980330_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030811.1|980332_981361_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483720.1|981353_982838_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000032740.1|982816_985006_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666806.1|984998_985670_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|985671_985935_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|985934_986639_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010413.1|986642_987767_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861573.1|987753_988236_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225836.1|988436_989297_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	4.4e-39
>prophage 78
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	999751	1003498	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074534.1|999751_1003498_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 79
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1007164	1008175	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676537.1|1007164_1008175_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
>prophage 80
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1016480	1020201	2819688		Enterococcus_phage(50.0%)	7	NA	NA
WP_001788574.1|1016480_1016771_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_001790177.1|1016834_1016966_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1017011_1017971_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766008.1|1018458_1018815_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1018903_1019041_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1019181_1019472_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1019559_1020201_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
>prophage 81
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1030395	1035606	2819688	protease	Pithovirus(33.33%)	3	NA	NA
WP_001795272.1|1030395_1032720_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1032938_1033742_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049950.1|1034043_1035606_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 82
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1054538	1056347	2819688		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1054538_1056347_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 83
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1062159	1064129	2819688		Bacillus_virus(100.0%)	2	NA	NA
WP_000427767.1|1062159_1063140_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.3e-15
WP_001067052.1|1063142_1064129_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
>prophage 84
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1067780	1069794	2819688		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|1067780_1068722_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|1068711_1069794_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 85
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1078385	1085194	2819688		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|1078385_1079531_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047069.1|1079640_1080510_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353954.1|1080567_1083177_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044230.1|1083379_1085194_-	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 86
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1090313	1093967	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000154921.1|1090313_1093967_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	2.0e-24
>prophage 87
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1104121	1111302	2819688		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|1104121_1105051_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_000138487.1|1105577_1106822_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167309.1|1106930_1108121_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.0e-33
WP_000838029.1|1108428_1109556_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1109916_1110294_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035063.1|1110708_1111302_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 88
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1121222	1124850	2819688		Mycoplasma_phage(50.0%)	3	NA	NA
WP_160199417.1|1121222_1122698_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	34.9	3.4e-47
WP_000046076.1|1122828_1124037_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143495.1|1124490_1124850_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.7e-14
>prophage 89
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1128893	1131562	2819688		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1128893_1130108_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129659.1|1130104_1131562_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	2.6e-39
>prophage 90
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1134788	1193949	2819688	terminase,portal,plate,head,capsid,tail,transposase,integrase,holin	Staphylococcus_phage(73.61%)	85	1158910:1158926	1193565:1193581
WP_001557163.1|1134788_1136108_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000598444.1|1136313_1136697_-	YutD family protein	NA	NA	NA	NA	NA
WP_000201875.1|1136826_1137744_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_001241246.1|1137827_1139147_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000927632.1|1139173_1140001_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000608129.1|1140013_1140862_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_016170465.1|1140909_1140993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000267236.1|1141203_1142271_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_000582326.1|1142284_1143325_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000274029.1|1143689_1144004_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000382163.1|1144833_1145034_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1145020_1145131_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1145201_1145354_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001035620.1|1145728_1146286_+	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001141517.1|1146345_1147758_-	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_000351119.1|1147744_1148020_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398868.1|1148075_1148471_-	hypothetical protein	NA	A1KXB6	Staphylococcus_virus	100.0	1.6e-68
WP_000276662.1|1148476_1149715_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	100.0	1.6e-210
WP_000524022.1|1149727_1151626_-	CHAP domain-containing protein	NA	A0EX80	Staphylococcus_virus	99.7	0.0e+00
WP_000466778.1|1151762_1152062_-	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_000782200.1|1152101_1152275_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|1152278_1152656_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000259619.1|1152655_1154479_-|plate	BppU family phage baseplate upper protein	plate	A1KX42	Staphylococcus_virus	99.2	3.9e-295
WP_000369017.1|1154478_1156389_-	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	98.9	0.0e+00
WP_160199418.1|1156403_1158305_-	peptidase	NA	I1W634	Staphylococcus_phage	99.7	0.0e+00
WP_000350675.1|1158313_1159261_-|tail	phage tail family protein	tail	A0A0F6N3L4	Staphylococcus_phage	100.0	2.8e-183
1158910:1158926	attL	TGTTTTTATCTAATTTC	NA	NA	NA	NA
WP_000141480.1|1159273_1162741_-	hypothetical protein	NA	A0A0F6N3F9	Staphylococcus_phage	100.0	4.2e-245
WP_000105584.1|1162757_1163102_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100161.1|1163131_1163497_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002577.1|1163558_1164140_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_000188643.1|1164158_1164542_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	98.4	3.8e-67
WP_001017817.1|1164553_1164901_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	99.1	2.0e-59
WP_001268312.1|1164900_1165203_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_000208960.1|1165199_1165532_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114086.1|1165540_1165828_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_000438511.1|1165849_1166824_-|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_000392151.1|1166837_1167458_-	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	98.5	1.7e-69
WP_000072208.1|1167566_1167737_-	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_001133044.1|1167809_1168805_-|head	phage head morphogenesis protein	head	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000909970.1|1168811_1170350_-|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_160199419.1|1170360_1171656_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	99.8	3.3e-256
WP_001038244.1|1171658_1172153_-|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_000162701.1|1172340_1172763_-	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000990004.1|1172828_1172933_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	7.0e-08
WP_000595257.1|1172933_1173107_-	transcriptional activator RinB	NA	Q4ZBK0	Staphylococcus_phage	100.0	6.4e-22
WP_000608278.1|1173099_1173336_-	hypothetical protein	NA	Q4ZDP0	Staphylococcus_virus	100.0	2.8e-36
WP_001072795.1|1173328_1173532_-	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000132921.1|1173528_1173723_-	hypothetical protein	NA	A0A2I6PEC2	Staphylococcus_phage	100.0	6.0e-29
WP_000617154.1|1173719_1173926_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	72.1	1.0e-18
WP_000185647.1|1173962_1174496_-	dUTP pyrophosphatase	NA	A1KX16	Staphylococcus_virus	99.4	2.4e-96
WP_072471035.1|1174488_1174683_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	87.5	8.5e-23
WP_001065060.1|1174645_1174900_-	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	97.6	2.5e-38
WP_001557190.1|1174892_1175264_-	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_000131376.1|1175272_1175515_-	hypothetical protein	NA	A0A0F6N3E1	Staphylococcus_phage	98.8	1.9e-40
WP_000029376.1|1175518_1175875_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000101252.1|1176002_1176308_-	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001187243.1|1176308_1176494_-	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_000049794.1|1176498_1176903_-	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	100.0	9.6e-69
WP_001123695.1|1176912_1177134_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000256589.1|1177146_1177305_-	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_000803062.1|1177298_1178078_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000414755.1|1178924_1179206_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_001124438.1|1179344_1180019_-	hypothetical protein	NA	R4IH15	Staphylococcus_phage	96.9	1.4e-125
WP_000934385.1|1180032_1180461_-	single-stranded DNA-binding protein	NA	B2ZYV4	Staphylococcus_phage	100.0	3.9e-60
WP_000139720.1|1180460_1181084_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000815401.1|1181076_1181298_-	DUF2483 domain-containing protein	NA	A7TWM6	Staphylococcus_phage	100.0	3.2e-34
WP_000291090.1|1181307_1181568_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000165363.1|1181572_1181875_-	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000066011.1|1181968_1182130_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000977381.1|1182122_1182344_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_001094943.1|1182357_1182807_-	hypothetical protein	NA	A1KWZ2	Staphylococcus_virus	100.0	3.0e-79
WP_000187184.1|1182846_1183071_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001002757.1|1183071_1183839_-	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000108122.1|1183838_1184033_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001055143.1|1184295_1184628_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000775187.1|1184644_1185319_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_000661437.1|1185346_1186072_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000392186.1|1186103_1187036_+	hypothetical protein	NA	A0EWN8	Staphylococcus_virus	100.0	3.9e-174
WP_000337826.1|1187015_1187195_-	hypothetical protein	NA	A0EWN7	Staphylococcus_virus	100.0	8.3e-25
WP_001145726.1|1187307_1188357_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_001074405.1|1188424_1189822_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|1189972_1190437_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807663.1|1190426_1191668_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205567.1|1191782_1193090_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1193187_1193949_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
1193565:1193581	attR	TGTTTTTATCTAATTTC	NA	NA	NA	NA
>prophage 91
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1197436	1198462	2819688		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571213.1|1197436_1198462_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
>prophage 92
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1201778	1206956	2819688		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1201778_1202135_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147952.1|1202278_1202599_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1202749_1203289_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150011.1|1203371_1204088_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.1	1.5e-16
WP_000974460.1|1204235_1204658_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1205056_1205551_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255551.1|1205705_1206323_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001802951.1|1206395_1206956_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
>prophage 93
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1210356	1211600	2819688		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1210356_1210557_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_000141557.1|1210913_1211600_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	1.7e-33
>prophage 94
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1220662	1229539	2819688		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757397.1|1220662_1221391_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001057759.1|1221582_1221729_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|1221744_1222068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085183.1|1223389_1223854_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050048.1|1223875_1226248_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001165959.1|1226281_1227022_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|1227137_1227371_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1227437_1227896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1228234_1229539_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 95
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1238766	1244696	2819688		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1238766_1239354_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1239917_1240862_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1240972_1241968_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1241964_1242876_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1243760_1244696_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 96
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1249143	1251990	2819688		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662677.1|1249143_1251990_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 97
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1255308	1256148	2819688		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000753319.1|1255308_1256148_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 98
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1262226	1267932	2819688		Streptococcus_phage(66.67%)	5	NA	NA
WP_001557172.1|1262226_1263309_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	9.9e-44
WP_000686344.1|1263672_1264539_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1264682_1265324_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258150.1|1265488_1266544_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1266861_1267932_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 99
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1278731	1302204	2819688		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1278731_1279493_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|1279489_1280446_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1280432_1281404_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1281442_1281598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1281778_1282750_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|1282867_1284973_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1284935_1285334_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|1286134_1287001_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1287020_1287521_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1287861_1289367_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|1289444_1289546_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1289636_1290554_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197262.1|1291432_1291975_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1292313_1293372_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000180991.1|1293611_1295126_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589248.1|1295118_1296096_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000983677.1|1296317_1298099_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525106.1|1298110_1299994_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1300263_1302204_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 100
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1305342	1315189	2819688		Pandoravirus(12.5%)	12	NA	NA
WP_001217796.1|1305342_1306494_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|1306477_1307071_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1307421_1308090_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1308091_1308511_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1308514_1309228_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1309326_1309911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1310190_1310631_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1310973_1311447_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1311421_1312108_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1312107_1313163_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|1313234_1314218_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931238.1|1314349_1315189_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.5	9.6e-55
>prophage 101
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1326801	1328175	2819688		Megavirus(100.0%)	1	NA	NA
WP_160199422.1|1326801_1328175_-	deoxyribodipyrimidine photo-lyase	NA	K7Y8W8	Megavirus	31.3	8.1e-43
>prophage 102
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1333152	1339432	2819688		Bacillus_phage(33.33%)	6	NA	NA
WP_000857598.1|1333152_1334826_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737160.1|1334822_1336454_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469894.1|1336672_1337548_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1337719_1338403_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148826.1|1338405_1338864_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820897.1|1338865_1339432_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 103
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1346222	1346696	2819688		Pandoravirus(100.0%)	1	NA	NA
WP_000833486.1|1346222_1346696_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	1.6e-14
>prophage 104
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1351958	1352756	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1351958_1352756_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 105
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1357587	1358349	2819688		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1357587_1358349_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 106
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1362723	1363767	2819688		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030772.1|1362723_1363767_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 107
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1370290	1371088	2819688		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1370290_1371088_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 108
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1374313	1378272	2819688		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1374313_1376041_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793067.1|1376461_1377757_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1377873_1378272_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 109
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1385206	1385950	2819688		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1385206_1385950_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 110
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1398488	1399049	2819688	integrase	Streptococcus_phage(100.0%)	1	1392642:1392656	1402648:1402662
1392642:1392656	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1398488_1399049_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1398488_1399049_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1402648:1402662	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 111
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1411886	1415240	2819688		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1411886_1412897_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_160199450.1|1413395_1413917_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1413944_1415240_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 112
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1422812	1424135	2819688		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860592.1|1422812_1424135_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	2.6e-107
>prophage 113
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1435439	1436096	2819688		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1435439_1436096_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 114
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1439737	1443058	2819688		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1439737_1441114_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1441657_1443058_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 115
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1466310	1466973	2819688		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1466310_1466973_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 116
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1473556	1474744	2819688		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250823.1|1473556_1474744_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
>prophage 117
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1477772	1488726	2819688		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1477772_1479854_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1479976_1480447_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1480512_1480926_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1481023_1481278_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|1481414_1485011_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1485174_1488726_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 118
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1492408	1497191	2819688	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1492408_1492957_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1492969_1493152_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1493207_1493351_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872882.1|1493465_1494035_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664737.1|1494115_1494640_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1494639_1495386_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1495393_1495798_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631969.1|1495790_1497191_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.2e-54
>prophage 119
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1503202	1505659	2819688	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1503202_1505659_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 120
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1519286	1529557	2819688	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1519286_1520774_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1520826_1520919_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613722.1|1521312_1521789_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1521785_1522151_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167944.1|1522128_1522932_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	3.0e-21
WP_000057594.1|1523147_1524080_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148598.1|1524258_1525140_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1525367_1527461_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1527717_1528257_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176709.1|1528261_1529557_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 121
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1538813	1541278	2819688		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1538813_1539779_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252543.1|1539925_1541278_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 122
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1547183	1550281	2819688	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051136.1|1547183_1549157_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.0	3.2e-93
WP_000279926.1|1549441_1550281_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 123
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1554187	1554805	2819688		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1554187_1554805_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 124
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1563944	1565642	2819688		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1563944_1565642_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 125
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1582290	1588529	2819688		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1582290_1583295_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825530.1|1583626_1584469_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1584505_1585165_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_160199428.1|1585168_1586194_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.1e-31
WP_001036648.1|1586488_1587631_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634098.1|1587623_1588529_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.8e-49
>prophage 126
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1614476	1617236	2819688		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072584.1|1614476_1615688_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	2.2e-44
WP_031770049.1|1615691_1617236_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.9	1.8e-285
>prophage 127
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1629773	1635222	2819688	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1629773_1630046_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041880.1|1630444_1631149_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_160199431.1|1631540_1632077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|1632189_1633731_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1633755_1635222_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 128
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1644182	1645706	2819688		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930514.1|1644182_1645706_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 129
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1654020	1660349	2819688		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1654020_1654524_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1654544_1654841_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052484.1|1655084_1655276_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001218732.1|1655361_1656459_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1656470_1656674_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373073.1|1656703_1657585_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001557587.1|1657738_1658584_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655692.1|1659245_1660349_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 130
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1670287	1671130	2819688		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209551.1|1670287_1671130_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.8e-11
>prophage 131
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1692439	1695174	2819688		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280799.1|1692439_1693462_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191954.1|1693439_1694384_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449069.1|1694373_1695174_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.4	5.8e-41
>prophage 132
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1713413	1714091	2819688		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1713413_1714091_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 133
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1729761	1734201	2819688		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549287.1|1729761_1734201_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	25.6	6.3e-28
>prophage 134
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1744806	1746468	2819688		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570070.1|1744806_1745466_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736784.1|1745517_1746468_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 135
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1755266	1756703	2819688		Pandoravirus(100.0%)	1	NA	NA
WP_000164003.1|1755266_1756703_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	1.1e-29
>prophage 136
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1760463	1765002	2819688		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1760463_1762203_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608818.1|1762462_1763137_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975351.1|1763280_1765002_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 137
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1774329	1775373	2819688		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645608.1|1774329_1775373_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	3.5e-14
>prophage 138
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1782587	1784117	2819688		Vibrio_phage(100.0%)	1	NA	NA
WP_000838205.1|1782587_1784117_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	50.7	4.5e-10
>prophage 139
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1792992	1794498	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008400.1|1792992_1794498_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 140
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1805605	1810964	2819688		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1805605_1807855_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1808442_1809411_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127990.1|1809407_1810964_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 141
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1821174	1823234	2819688		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818915.1|1821174_1822272_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166920.1|1822655_1823234_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.1	9.7e-14
>prophage 142
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1831783	1834971	2819688		Planktothrix_phage(33.33%)	3	NA	NA
WP_000067352.1|1831783_1833376_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
WP_000794565.1|1833885_1834083_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
WP_000960712.1|1834248_1834971_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	4.1e-22
>prophage 143
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1838842	1839523	2819688		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571407.1|1838842_1839523_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	2.9e-33
>prophage 144
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1856328	1857513	2819688		Klosneuvirus(100.0%)	1	NA	NA
WP_001084442.1|1856328_1857513_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	2.0e-34
>prophage 145
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1862349	1872633	2819688		Tupanvirus(50.0%)	3	NA	NA
WP_000605281.1|1862349_1869525_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.7	4.5e-68
WP_000826861.1|1869971_1871222_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706135.1|1871607_1872633_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.5	8.5e-29
>prophage 146
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1876168	1879398	2819688		Bacillus_virus(50.0%)	4	NA	NA
WP_000590855.1|1876168_1876909_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	2.5e-38
WP_000171919.1|1877250_1877763_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1877941_1878145_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013485.1|1878438_1879398_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 147
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1882739	1885224	2819688		Catovirus(50.0%)	2	NA	NA
WP_000723436.1|1882739_1883885_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	25.9	4.6e-23
WP_000779504.1|1883961_1885224_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	4.3e-22
>prophage 148
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1892059	1898624	2819688		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1892059_1893184_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028283.1|1893187_1894297_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1894309_1895338_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940790.1|1895327_1897151_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	5.2e-29
WP_000565304.1|1897170_1897935_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037332.1|1897937_1898624_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 149
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1902644	1903820	2819688		Clostridium_phage(100.0%)	1	NA	NA
WP_000469833.1|1902644_1903820_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.6	2.0e-29
>prophage 150
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1909259	1910033	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1909259_1910033_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 151
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1918064	1918664	2819688		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1918064_1918664_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 152
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1923601	1928698	2819688		Catovirus(50.0%)	6	NA	NA
WP_001793242.1|1923601_1924582_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
WP_001789407.1|1924651_1924774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000183771.1|1924917_1925694_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414629.1|1925905_1926532_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1926727_1927492_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223713.1|1927495_1928698_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 153
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1936964	1941174	2819688		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1936964_1937945_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1938175_1939168_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924990.1|1939183_1940179_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136633.1|1940175_1941174_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.8	5.2e-15
>prophage 154
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1974304	1975369	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816133.1|1974304_1975369_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.8	7.7e-09
>prophage 155
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	1986057	1992711	2819688		Streptococcus_phage(50.0%)	4	NA	NA
WP_000852430.1|1986057_1988079_-	K(+)-transporting ATPase subunit B	NA	E4ZFI9	Streptococcus_phage	29.0	6.6e-41
WP_000029431.1|1988097_1989774_-	potassium-transporting ATPase subunit A	NA	NA	NA	NA	NA
WP_000631574.1|1989794_1989875_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_160199438.1|1990041_1992711_+	sensor histidine kinase KdpD	NA	A0A2K9L0Z8	Tupanvirus	21.5	6.0e-10
>prophage 156
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2000493	2006825	2819688	transposase	Bacillus_phage(66.67%)	7	NA	NA
WP_000815646.1|2000493_2001843_+	recombinase family protein	NA	Q9T200	Bacillus_phage	25.1	1.4e-18
WP_001186602.1|2001864_2003493_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	2.4e-46
WP_000859155.1|2004010_2004361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700853.1|2004447_2004759_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001092169.1|2004776_2005283_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000659050.1|2005303_2005621_+	RadC family protein	NA	NA	NA	NA	NA
WP_000868132.1|2005739_2006825_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
>prophage 157
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2010156	2010888	2819688		Streptococcus_phage(100.0%)	1	NA	NA
WP_001072201.1|2010156_2010888_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
>prophage 158
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2023436	2024111	2819688	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001106057.1|2023436_2024111_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
>prophage 159
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2028494	2029457	2819688	transposase	Streptococcus_phage(50.0%)	2	NA	NA
WP_001817892.1|2028494_2028692_+	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	1.2e-08
WP_001106057.1|2028782_2029457_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
>prophage 160
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2035112	2045122	2819688		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2035112_2035913_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_160199440.1|2036301_2037090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|2037090_2038425_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2038417_2040244_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2040256_2040958_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|2042160_2043444_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|2043721_2045122_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 161
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2051812	2060858	2819688	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884332.1|2051812_2053099_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
WP_000177465.1|2053477_2054992_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.2e-90
WP_000449218.1|2055317_2056130_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819067.1|2056217_2058887_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	4.6e-119
WP_000255578.1|2058923_2060858_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 162
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2070958	2077515	2819688		Faecalibacterium_phage(25.0%)	8	NA	NA
WP_000742837.1|2070958_2071798_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2072248_2072602_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2072669_2073065_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054128.1|2073324_2073894_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2074011_2074212_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_000672033.1|2074603_2074795_-	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_000143647.1|2074886_2076767_-	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000154162.1|2076756_2077515_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 163
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2091768	2093481	2819688		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138654.1|2091768_2093481_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 164
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2099109	2100123	2819688		Faustovirus(100.0%)	1	NA	NA
WP_000639184.1|2099109_2100123_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 165
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2112462	2113155	2819688		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185863.1|2112462_2113155_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 166
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2139253	2141113	2819688		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125628.1|2139253_2141113_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 167
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2166796	2168547	2819688		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143425.1|2166796_2167684_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2167791_2168547_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 168
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2171967	2172465	2819688		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2171967_2172465_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 169
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2177459	2179843	2819688		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071729.1|2177459_2179310_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	9.3e-236
WP_000173331.1|2179306_2179843_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 170
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2184721	2194835	2819688	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|2184721_2186431_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2186708_2186921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028775.1|2187200_2187644_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172341.1|2187837_2189436_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_001791980.1|2189495_2189825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2190120_2191617_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031409.1|2191810_2192701_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237629.1|2192823_2193240_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030072.1|2193497_2194835_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
>prophage 171
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2225167	2228956	2819688		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000751263.1|2225167_2225869_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	5.2e-38
WP_000379821.1|2227144_2228956_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 172
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2237390	2241505	2819688		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161369.1|2237390_2238389_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	1.0e-34
WP_000076661.1|2238479_2238686_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024139.1|2239096_2241505_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	3.2e-127
>prophage 173
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2250746	2253782	2819688	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058993.1|2250746_2252852_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455988.1|2253260_2253782_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 174
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2260208	2266592	2819688		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062663.1|2260208_2261948_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473679.1|2262248_2264315_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206031.1|2264694_2265105_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|2265146_2265503_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228167.1|2265623_2266592_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	4.0e-12
>prophage 175
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2275881	2276874	2819688		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161545.1|2275881_2276874_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	3.7e-37
>prophage 176
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2286152	2286848	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000538625.1|2286152_2286848_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	3.0e-38
>prophage 177
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2305598	2306465	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|2305598_2306465_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 178
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2314650	2319846	2819688		Streptococcus_phage(50.0%)	3	NA	NA
WP_075339662.1|2314650_2316459_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.3	6.6e-93
WP_000755946.1|2316590_2316983_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088733.1|2316984_2319846_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	3.1e-28
>prophage 179
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2327688	2328384	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000217456.1|2327688_2328384_+	oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	4.3e-08
>prophage 180
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2332938	2333757	2819688		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824948.1|2332938_2333757_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	27.2	1.3e-08
>prophage 181
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2341809	2343367	2819688		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173871.1|2341809_2342625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	8.8e-13
WP_000598772.1|2342617_2343367_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	9.0e-20
>prophage 182
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2350638	2355067	2819688		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923526.1|2350638_2351301_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.5e-21
WP_000072149.1|2351293_2352070_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026189.1|2352465_2353653_+	DHA family class C beta-lactamase	NA	NA	NA	NA	NA
WP_000700925.1|2353714_2355067_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
>prophage 183
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2358461	2360320	2819688		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948974.1|2358461_2359688_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2359684_2360320_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 184
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2378047	2384309	2819688		Bacillus_phage(66.67%)	5	NA	NA
WP_160199443.1|2378047_2379190_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779360.1|2379457_2379844_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482652.1|2379977_2380085_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064825.1|2380787_2382551_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.5e-36
WP_000486487.1|2382575_2384309_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
>prophage 185
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2387770	2393541	2819688		Staphylococcus_phage(75.0%)	6	NA	NA
WP_160199444.1|2387770_2388886_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.4	1.0e-19
WP_000286875.1|2388896_2389589_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200956.1|2389599_2390067_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000783428.1|2390118_2391096_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916704.1|2391097_2392045_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
WP_000594519.1|2392611_2393541_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 186
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2401598	2402330	2819688		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2401598_2402330_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 187
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2418979	2420539	2819688		Escherichia_phage(100.0%)	1	NA	NA
WP_000692648.1|2418979_2420539_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 188
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2441868	2442903	2819688		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|2441868_2442903_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 189
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2452748	2456645	2819688		Hokovirus(33.33%)	4	NA	NA
WP_000477338.1|2452748_2454122_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	2.3e-13
WP_000249497.1|2454114_2454789_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2454924_2455980_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229920.1|2455979_2456645_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.6e-36
>prophage 190
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2460381	2461590	2819688		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2460381_2461590_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 191
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2473680	2474580	2819688		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524830.1|2473680_2474580_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 192
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2481952	2482372	2819688		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|2481952_2482372_-	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 193
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2488064	2488946	2819688		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000235289.1|2488064_2488946_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 194
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2496824	2497460	2819688		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2496824_2497460_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 195
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2510403	2514383	2819688		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011447058.1|2510403_2511042_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000684147.1|2511352_2512477_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	9.3e-13
WP_000417018.1|2512568_2513522_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	6.4e-31
WP_000737705.1|2513882_2514383_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 196
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2518300	2519104	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2518300_2519104_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 197
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2538084	2538690	2819688		Pithovirus(100.0%)	1	NA	NA
WP_000913024.1|2538084_2538690_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.1	4.3e-12
>prophage 198
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2550660	2553828	2819688		Leptospira_phage(100.0%)	1	NA	NA
WP_000592307.1|2550660_2553828_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	1.1e-61
>prophage 199
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2577511	2579178	2819688		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389658.1|2577511_2578321_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	1.7e-19
WP_000155387.1|2578317_2579178_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 200
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2587959	2595615	2819688		Enterobacteria_phage(33.33%)	7	NA	NA
WP_000411031.1|2587959_2588976_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.7	1.0e-18
WP_000655241.1|2589549_2589732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130149.1|2590225_2591890_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	8.0e-45
WP_000186134.1|2591926_2592631_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769705.1|2593014_2593440_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044362.1|2593734_2594550_+	hydrolase	NA	NA	NA	NA	NA
WP_001044441.1|2594760_2595615_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
>prophage 201
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2598997	2601307	2819688		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001015500.1|2598997_2599846_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_000875476.1|2600078_2600282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791678.1|2600368_2600530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001557494.1|2600566_2601307_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.9	1.5e-14
>prophage 202
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2607627	2609040	2819688		Pandoravirus(100.0%)	1	NA	NA
WP_000169224.1|2607627_2609040_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 203
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2613003	2614566	2819688		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2613003_2614566_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 204
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2624768	2625737	2819688		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2624768_2625737_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 205
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2643189	2644098	2819688		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2643189_2644098_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 206
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2647689	2655135	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001048259.1|2647689_2655135_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.5	3.9e-22
>prophage 207
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2661391	2664211	2819688		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334463.1|2661391_2663197_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.8	5.2e-98
WP_000908182.1|2663428_2664211_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.3e-09
>prophage 208
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2675391	2679222	2819688		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2675391_2675835_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_160199446.1|2675955_2676666_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083318.1|2676979_2677642_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242311.1|2677920_2679222_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
>prophage 209
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2687162	2688773	2819688		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2687162_2688773_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 210
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2696576	2704326	2819688		Bacillus_virus(25.0%)	9	NA	NA
WP_000273358.1|2696576_2697176_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2697176_2698253_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248732.1|2698239_2699076_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_015445903.1|2699108_2700206_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.3	2.3e-40
WP_000697334.1|2700202_2700622_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654184.1|2700728_2701253_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_160199447.1|2701279_2702518_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	2.4e-102
WP_000048712.1|2702545_2703175_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2703198_2704326_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 211
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2714730	2715126	2819688		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2714730_2715126_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 212
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2721397	2722045	2819688		Moumouvirus(100.0%)	1	NA	NA
WP_001187630.1|2721397_2722045_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	8.0e-09
>prophage 213
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2729245	2730766	2819688		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2729245_2730766_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 214
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2737956	2739984	2819688		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546611.1|2737956_2739984_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 215
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2745133	2748517	2819688		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2745133_2745496_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390827.1|2745844_2746846_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2746964_2747291_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2747292_2747772_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041111.1|2747746_2748517_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	2.2e-21
>prophage 216
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2762635	2767359	2819688		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094583.1|2762635_2764165_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2764194_2765214_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2765335_2765590_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047811.1|2765589_2767359_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	7.0e-63
>prophage 217
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2771119	2785180	2819688	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159042.1|2771119_2772145_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	3.4e-62
WP_000106332.1|2772459_2774070_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	1.9e-19
WP_001792272.1|2774158_2774287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602057.1|2774431_2776360_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001283612.1|2776612_2777248_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072414299.1|2777602_2778631_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581076.1|2778690_2778915_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052270.1|2779122_2780373_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
WP_000790331.1|2780555_2781506_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141432.1|2781654_2783139_+	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	26.5	2.3e-19
WP_001253312.1|2783135_2784095_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2784463_2785180_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 218
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2792361	2794338	2819688		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2792361_2792646_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240655.1|2792721_2794338_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
>prophage 219
NZ_CP047863	Staphylococcus aureus strain UP_1106 chromosome, complete genome	2819688	2798287	2819218	2819688	integrase	Staphylococcus_phage(97.22%)	38	2801130:2801144	2810833:2810847
WP_000791411.1|2798287_2799343_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2799364_2800381_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2801130:2801144	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857180.1|2801499_2802537_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000427213.1|2802599_2802842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001558608.1|2802852_2803836_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000694772.1|2803935_2804118_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_000591749.1|2804321_2804663_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2804668_2805601_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2805616_2806330_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000854072.1|2806463_2806727_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2806742_2806958_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128909.1|2806946_2807276_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001148605.1|2807326_2808079_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148856.1|2808094_2808292_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_000762521.1|2808278_2808659_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2808713_2809037_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2809033_2809195_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2809289_2809592_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2809596_2809857_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2809865_2810129_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700554.1|2810137_2812081_+	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
2810833:2810847	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000180600.1|2812082_2813003_+	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_064135358.1|2813083_2813701_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000934759.1|2813701_2814172_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_000148333.1|2814201_2815095_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338528.1|2815101_2815320_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401969.1|2815328_2815733_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000101279.1|2815745_2816117_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000111491.1|2816116_2816374_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000178987.1|2816370_2816619_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_001065108.1|2816633_2816879_+	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000185693.1|2816875_2817412_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001282077.1|2817448_2817694_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000195784.1|2817690_2817897_+	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_000595265.1|2817893_2818043_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001557462.1|2818042_2818243_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2818270_2818687_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|2818918_2819218_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
