assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	1	410949-411033	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	410975-411007|410975-411007	NZ_CP047854.1_680981-680949|NZ_CP047854.1_1244006-1244038	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047854.1_401578_402148_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047854.1_402137_402722_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047854.1_402722_403076_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047854.1_403078_403795_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047854.1_403834_404521_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047854.1_404612_405074_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047854.1_405132_407280_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047854.1_407336_408311_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047854.1_408355_408607_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047854.1_408952_410776_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047854.1_411341_412466_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047854.1_412566_413544_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047854.1_413575_414202_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047854.1_414270_416103_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047854.1_416238_417378_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047854.1_417381_418320_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047854.1_418321_419074_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047854.1_419080_420427_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047854.1_420719_420896_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047854.1_421139_421823_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2	1200777-1200858	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1200801-1200834	NZ_CP047854.1_680982-680949	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047854.1_1201841_1201955_-	NA|414aa|up_9|NZ_CP047854.1_1191204_1192446_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047854.1_1192560_1193868_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047854.1_1193965_1194727_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047854.1_1195054_1195906_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047854.1_1196139_1196334_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047854.1_1196687_1197509_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047854.1_1197526_1198222_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047854.1_1198214_1199240_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047854.1_1199489_1199786_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047854.1_1199778_1200165_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047854.1_1200961_1201840_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047854.1_1201841_1201955_-	NA	NA|127aa|down_2|NZ_CP047854.1_1202018_1202399_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047854.1_1202556_1202913_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047854.1_1203056_1203377_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047854.1_1203527_1204067_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047854.1_1204149_1204866_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047854.1_1205013_1205436_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047854.1_1205834_1206329_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047854.1_1206483_1207101_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	3	1249518-1249596	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	1249542-1249572|1249542-1249572|1249542-1249572	NZ_CP047854.1_1802951-1802921|NZ_CP047854.1_376521-376551|NZ_CP047854.1_1803006-1802976	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047854.1_1257074_1257182_-	NA|301aa|up_9|NZ_CP047854.1_1238399_1239302_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047854.1_1239544_1240132_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047854.1_1240695_1241640_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047854.1_1241750_1242746_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047854.1_1242742_1243654_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047854.1_1244539_1245475_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047854.1_1245541_1246981_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047854.1_1246988_1247474_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047854.1_1247481_1248321_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047854.1_1248326_1249259_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047854.1_1249922_1252769_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047854.1_1252776_1254762_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047854.1_1255030_1255267_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047854.1_1255263_1255914_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047854.1_1256087_1256927_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047854.1_1257074_1257182_-	NA	NA|370aa|down_6|NZ_CP047854.1_1257335_1258446_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|440aa|down_7|NZ_CP047854.1_1258820_1260140_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|844aa|down_8|NZ_CP047854.1_1260280_1262812_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047854.1_1263225_1263798_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	4	1642249-1642351	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047854.1_1633867_1634404_+,NA|221aa|up_1|NZ_CP047854.1_1640495_1641158_+,NA|33aa|down_0|NZ_CP047854.1_1643026_1643125_-,NA|128aa|down_6|NZ_CP047854.1_1649372_1649756_+,NA|70aa|down_8|NZ_CP047854.1_1650580_1650790_+	NA|91aa|up_9|NZ_CP047854.1_1632100_1632373_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047854.1_1632771_1633476_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047854.1_1633867_1634404_+	NA	NA|514aa|up_6|NZ_CP047854.1_1634516_1636058_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047854.1_1636082_1637549_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047854.1_1637586_1638855_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047854.1_1638854_1639433_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047854.1_1639945_1640353_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047854.1_1640495_1641158_+	NA	NA|319aa|up_0|NZ_CP047854.1_1641275_1642232_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP047854.1_1643026_1643125_-	NA	NA|463aa|down_1|NZ_CP047854.1_1643209_1644598_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047854.1_1644677_1645433_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047854.1_1645924_1646494_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047854.1_1646509_1648033_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047854.1_1648476_1649103_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047854.1_1649372_1649756_+	NA	NA|194aa|down_7|NZ_CP047854.1_1649821_1650403_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047854.1_1650580_1650790_+	NA	NA|84aa|down_9|NZ_CP047854.1_1650828_1651080_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	5	2348798-2348931	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2348815-2348860|2348878-2348914	NZ_CP047854.1_2345291-2345336|NZ_CP047854.1_2345354-2345390	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047854.1_2342467_2342668_+,NA|78aa|down_5|NZ_CP047854.1_2357248_2357482_+,NA|103aa|down_6|NZ_CP047854.1_2357589_2357898_-,NA|89aa|down_7|NZ_CP047854.1_2358041_2358308_-	NA|426aa|up_9|NZ_CP047854.1_2332464_2333742_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047854.1_2334218_2336042_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047854.1_2336180_2336597_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047854.1_2336827_2337520_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047854.1_2337684_2338449_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047854.1_2338601_2339282_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047854.1_2339305_2340859_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047854.1_2340975_2342334_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047854.1_2342467_2342668_+	NA	NA|997aa|up_0|NZ_CP047854.1_2342802_2345793_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047854.1_2349539_2350406_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047854.1_2350616_2351360_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047854.1_2351683_2352040_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|1116aa|down_3|NZ_CP047854.1_2352344_2355692_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP047854.1_2356075_2357152_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP047854.1_2357248_2357482_+	NA	NA|103aa|down_6|NZ_CP047854.1_2357589_2357898_-	NA	NA|89aa|down_7|NZ_CP047854.1_2358041_2358308_-	NA	NA|603aa|down_8|NZ_CP047854.1_2358591_2360400_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP047854.1_2360531_2360924_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	6	2424345-2424423	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	5	2424368-2424400|2424368-2424400|2424368-2424400|2424368-2424400|2424368-2424400	NZ_CP047854.1_1200488-1200520|NZ_CP047854.1_1236707-1236739|NZ_CP047854.1_2816284-2816252|NZ_CP047854.1_1236763-1236795|NZ_CP047854.1_1236819-1236851	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047854.1_2421269_2421929_-,NA|36aa|up_0|NZ_CP047854.1_2423918_2424026_+,NA	NA|693aa|up_9|NZ_CP047854.1_2413731_2415810_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047854.1_2415947_2417357_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047854.1_2417642_2418449_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047854.1_2418511_2419168_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047854.1_2419280_2419754_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047854.1_2419876_2421088_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047854.1_2421269_2421929_-	NA	NA|381aa|up_2|NZ_CP047854.1_2421988_2423131_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047854.1_2423398_2423785_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047854.1_2423918_2424026_+	NA	NA|588aa|down_0|NZ_CP047854.1_2424728_2426492_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047854.1_2426516_2428250_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047854.1_2428702_2429389_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047854.1_2429366_2430725_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047854.1_2430726_2431734_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047854.1_2431711_2432827_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047854.1_2432837_2433530_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047854.1_2433540_2434008_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047854.1_2434059_2435037_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047854.1_2435038_2435986_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	7	2589133-2589213	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	15	2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188|2589158-2589188	NZ_CP047854.1_1236767-1236797|NZ_CP047854.1_1236823-1236853|NZ_CP047854.1_396369-396339|NZ_CP047854.1_681023-680993|NZ_CP047854.1_887124-887094|NZ_CP047854.1_1418995-1418965|NZ_CP047854.1_1681088-1681058|NZ_CP047854.1_80559-80589|NZ_CP047854.1_592445-592475|NZ_CP047854.1_592561-592591|NZ_CP047854.1_989551-989581|NZ_CP047854.1_1200492-1200522|NZ_CP047854.1_1236711-1236741|NZ_CP047854.1_2024728-2024758|NZ_CP047854.1_2599959-2599989	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047854.1_2589254_2589440_-,NA|84aa|down_5|NZ_CP047854.1_2592579_2592831_-,NA|106aa|down_8|NZ_CP047854.1_2597952_2598270_-,NA|55aa|down_9|NZ_CP047854.1_2598514_2598679_-	NA|202aa|up_9|NZ_CP047854.1_2582025_2582631_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047854.1_2582800_2583805_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047854.1_2583835_2584342_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047854.1_2584343_2584838_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047854.1_2584900_2586160_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047854.1_2586156_2586642_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047854.1_2586655_2587102_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047854.1_2587107_2587341_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047854.1_2587347_2587947_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047854.1_2587966_2588989_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047854.1_2589254_2589440_-	NA	NA|117aa|down_1|NZ_CP047854.1_2589565_2589916_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047854.1_2590017_2591229_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047854.1_2591221_2591662_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047854.1_2591823_2592588_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047854.1_2592579_2592831_-	NA	NA|422aa|down_6|NZ_CP047854.1_2593219_2594485_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047854.1_2594601_2597769_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047854.1_2597952_2598270_-	NA	NA|55aa|down_9|NZ_CP047854.1_2598514_2598679_-	NA
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	8	2698689-2698774	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047854.1_2709736_2709895_-,NA|35aa|down_8|NZ_CP047854.1_2710574_2710679_+,NA|364aa|down_9|NZ_CP047854.1_2711111_2712203_-	NA|228aa|up_9|NZ_CP047854.1_2673619_2674303_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_8|NZ_CP047854.1_2674479_2675823_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_7|NZ_CP047854.1_2675921_2676395_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_6|NZ_CP047854.1_2676717_2678160_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_5|NZ_CP047854.1_2678307_2679372_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|440aa|up_4|NZ_CP047854.1_2685662_2686982_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|303aa|up_3|NZ_CP047854.1_2687132_2688041_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047854.1_2688229_2689039_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047854.1_2689040_2689973_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047854.1_2689999_2691355_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047854.1_2699396_2700503_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047854.1_2700502_2700937_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047854.1_2700948_2703081_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047854.1_2703115_2704654_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047854.1_2705334_2707140_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047854.1_2707371_2708154_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047854.1_2708221_2709079_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047854.1_2709736_2709895_-	NA	NA|35aa|down_8|NZ_CP047854.1_2710574_2710679_+	NA	NA|364aa|down_9|NZ_CP047854.1_2711111_2712203_-	NA
GCF_009913135.1_ASM991313v1	NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	9	2711014-2711095	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047854.1_2709736_2709895_-,NA|35aa|up_0|NZ_CP047854.1_2710574_2710679_+,NA|364aa|down_0|NZ_CP047854.1_2711111_2712203_-,NA|77aa|down_5|NZ_CP047854.1_2715989_2716220_+	NA|2482aa|up_9|NZ_CP047854.1_2691632_2699078_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047854.1_2699396_2700503_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047854.1_2700502_2700937_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047854.1_2700948_2703081_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047854.1_2703115_2704654_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047854.1_2705334_2707140_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047854.1_2707371_2708154_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047854.1_2708221_2709079_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047854.1_2709736_2709895_-	NA	NA|35aa|up_0|NZ_CP047854.1_2710574_2710679_+	NA	NA|364aa|down_0|NZ_CP047854.1_2711111_2712203_-	NA	NA|326aa|down_1|NZ_CP047854.1_2712468_2713446_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047854.1_2713447_2713768_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047854.1_2713919_2714585_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047854.1_2715020_2715959_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047854.1_2715989_2716220_+	NA	NA|458aa|down_6|NZ_CP047854.1_2716891_2718265_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047854.1_2718721_2719135_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047854.1_2719334_2719778_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047854.1_2719898_2720609_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
