The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	0	25609	2863573	capsid,portal,head,tail,protease,holin,terminase	Staphylococcus_phage(100.0%)	28	NA	NA
WP_160199161.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	99.8	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|6484_7129_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_000504566.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	97.0	0.0e+00
WP_000567396.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_000582152.1|14065_17848_+	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
WP_001000058.1|17840_17993_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262621.1|18038_18326_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|18381_18756_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034846.1|19167_19950_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_011447039.1|20152_20329_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20381_20489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20540_20795_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_002955266.1|20806_21562_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	99.6	7.6e-152
WP_000920042.1|21752_22244_+	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000727645.1|23319_23769_-	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000702262.1|24451_24802_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24854_25115_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|25429_25609_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	31218	33665	2863573		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991306.1|31218_32115_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000645727.1|32115_32796_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763043.1|32792_33665_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
>prophage 3
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	39428	39830	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|39428_39830_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 4
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	44026	46053	2863573		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|44026_44587_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275727.1|44955_46053_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
>prophage 5
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	50083	52367	2863573		Bacillus_virus(100.0%)	2	NA	NA
WP_000284436.1|50083_51553_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000040866.1|51545_52367_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 6
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	56068	62835	2863573		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|56068_57364_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|57472_57775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272056.1|57946_58639_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|58635_60828_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774556.1|60831_62835_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
>prophage 7
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	70009	75038	2863573		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|70009_70957_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147865.1|71037_72399_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.6	1.4e-103
WP_000548781.1|72568_73099_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140172.1|73345_74416_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|74483_75038_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	78490	78904	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001557448.1|78490_78904_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.3	6.7e-17
>prophage 9
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	83958	84588	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|83958_84588_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	100068	101805	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|100068_101805_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 11
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	115042	223593	2863573	tRNA,protease,transposase	Staphylococcus_phage(92.73%)	101	NA	NA
WP_001557163.1|115042_116362_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|116945_118007_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649908.1|118264_119722_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|119708_120437_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|120572_121715_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|121719_122190_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|122348_122948_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|122972_123125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|123672_124068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116228.1|124263_125649_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|126101_126923_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437969.1|127085_128198_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045135.1|128219_128843_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|129198_129663_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992518.1|129841_130966_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|131034_131379_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|131917_132016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|132306_133503_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584630.1|133492_136429_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|136425_137367_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|137487_138450_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|138654_139212_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|139946_140312_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|140453_140876_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|141009_141750_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551836.1|141742_142966_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|143089_143593_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|143755_143866_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|143855_144893_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|144950_145874_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167542.1|145897_147298_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|147620_148175_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_010922839.1|149534_150317_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821658.1|150597_151317_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|151351_152080_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_001236362.1|153043_153799_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000736709.1|154081_154858_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848318.1|155409_156186_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|156206_156443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001253432.1|156520_157015_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000206343.1|157848_158637_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
WP_000473596.1|159999_160935_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|160936_161920_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|162289_163081_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|163085_163559_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469591.1|163814_164033_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_001092780.1|164505_165087_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_001039427.1|166050_166758_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001039454.1|166882_167605_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001038872.1|167662_168382_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001038704.1|168502_169222_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|169170_169278_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|169379_170099_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001791797.1|170161_170296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001793440.1|170276_172016_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_000072627.1|172008_173238_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001792025.1|174313_174415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|174537_174633_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414216.1|175987_176560_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_000627540.1|176660_177002_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000669024.1|177042_177669_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000070642.1|177743_178739_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_001795210.1|178819_179470_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_012840523.1|179772_180228_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348364.1|180386_181865_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778528.1|181869_182871_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000718107.1|182867_183125_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|183190_183664_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001822900.1|183668_184415_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|184792_186385_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933820.1|186756_187953_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366163.1|188074_188983_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453306.1|189194_190028_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000623470.1|192024_192378_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|192374_192740_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|192995_193298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|193557_194271_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168903.1|194710_195346_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|195641_196085_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|196071_196515_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|196627_197098_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|197296_197521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|197796_198651_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|198737_200030_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|200029_200344_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|200866_202369_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384185.1|202861_203893_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493887.1|203899_204532_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_001159037.1|204542_205724_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008549.1|205736_206201_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196362.1|206322_207324_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|207434_207554_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|207556_208384_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|208955_209357_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|209479_210043_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|210039_210993_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|211102_212284_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_001108730.1|212574_214989_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836461.1|215010_215322_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001050574.1|215647_222208_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.2	2.3e-305
WP_000285020.1|222324_223593_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
>prophage 12
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	234998	240326	2863573		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|234998_235856_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|235884_236481_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118314.1|236501_240326_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 13
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	249060	250767	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862096.1|249060_250767_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	8.0e-274
>prophage 14
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	257371	260002	2863573	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|257371_258634_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|258727_260002_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 15
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	263771	267904	2863573		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808849.1|263771_265376_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291420.1|265362_266520_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553924.1|266634_267081_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174280.1|267160_267904_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 16
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	285496	288694	2863573		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226918.1|285496_288694_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.5	7.2e-135
>prophage 17
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	293627	295385	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|293627_295385_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 18
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	300269	308433	2863573		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|300269_300974_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|300973_302635_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849428.1|303133_304621_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038317.1|304914_307545_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114454.1|307560_308433_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
>prophage 19
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	312348	323501	2863573	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|312348_313269_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|313361_313484_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|313681_315619_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049145.1|316044_317538_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|317766_318294_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|318322_318523_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|318569_318926_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|319067_319676_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280022.1|319694_320624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|320628_320739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|320786_322088_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|322238_323501_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 20
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	333068	339715	2863573	tRNA,transposase	Catovirus(50.0%)	5	NA	NA
WP_000425353.1|333068_335699_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
WP_001108346.1|335711_336983_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000261115.1|337252_337960_+	prepilin peptidase	NA	NA	NA	NA	NA
WP_000692869.1|337956_338511_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_000868132.1|338629_339715_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
>prophage 21
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	343046	343778	2863573		Streptococcus_phage(100.0%)	1	NA	NA
WP_001072201.1|343046_343778_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
>prophage 22
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	352320	387933	2863573	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005768.1|352320_353325_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|353326_354352_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|354374_355514_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|355532_355793_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|356067_358347_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595011.1|358549_360823_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|360844_361363_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058587.1|361790_363980_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|363991_364444_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_160199164.1|364440_365316_+	SH3 domain-containing protein	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|365776_367039_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|367054_368821_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|369153_369282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|369281_370055_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102726.1|370215_371490_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.5	3.1e-105
WP_000704122.1|371574_371997_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|372096_372279_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|372318_372465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985878.1|372701_373715_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409157.1|374026_375169_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
WP_000066097.1|375169_376288_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567017.1|376982_377651_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283312.1|377652_380130_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734075.1|380472_383103_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|383165_383426_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|383429_383858_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|383872_384181_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342258.1|384465_385104_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	3.2e-10
WP_000137772.1|385106_386030_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|386041_387310_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|387309_387933_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 23
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	394605	395826	2863573		Lactococcus_phage(100.0%)	1	NA	NA
WP_000542320.1|394605_395826_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	2.2e-52
>prophage 24
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	404612	410776	2863573		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|404612_405074_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953309.1|405132_407280_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282563.1|407336_408311_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|408355_408607_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|408952_410776_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 25
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	414270	417378	2863573		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|414270_416103_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|416238_417378_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 26
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	423848	424796	2863573		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|423848_424796_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 27
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	427849	441595	2863573	tRNA	Klosneuvirus(28.57%)	13	NA	NA
WP_001030080.1|427849_429241_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001797828.1|429575_430199_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|430209_431028_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217257.1|431088_432906_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
WP_001283055.1|433129_434236_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624577.1|434366_435044_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683940.1|435046_436147_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_001062177.1|436260_437607_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|437616_438507_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|438632_439418_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564315.1|439459_440323_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|440309_440720_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|440995_441595_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 28
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	447768	448392	2863573		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|447768_448392_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 29
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	453936	456748	2863573		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019691.1|453936_455283_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.2	1.7e-61
WP_000202188.1|455275_456748_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 30
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	464248	470819	2863573		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|464248_465586_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|465578_465809_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183383.1|465786_466668_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	2.0e-10
WP_001124985.1|467099_467552_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942210.1|467567_469247_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|469397_470819_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 31
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	477648	479055	2863573		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|477648_479055_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 32
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	485481	486966	2863573		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|485481_486966_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 33
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	490493	502103	2863573		Klosneuvirus(16.67%)	12	NA	NA
WP_001171335.1|490493_491402_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	32.0	4.4e-05
WP_000365240.1|491483_492026_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000392691.1|492130_492580_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000447733.1|492628_493516_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183429.1|493593_494100_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|494191_494923_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368656.1|494915_495458_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|495450_496188_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|496320_497046_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987774.1|497026_498778_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_001557355.1|499021_499948_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033761.1|499940_502103_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	2.7e-109
>prophage 34
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	506531	509210	2863573		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|506531_506780_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|506887_507841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902099.1|507830_509210_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
>prophage 35
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	518634	524101	2863573		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|518634_518907_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|519337_519910_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|519912_520638_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001817755.1|520654_521599_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|521690_522140_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|522348_522549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269921.1|522934_524101_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
>prophage 36
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	527763	528339	2863573		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|527763_528339_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 37
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	531711	539217	2863573	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361540.1|531711_532914_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000049921.1|532900_533872_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|533895_536589_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858779.1|536910_538203_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000362218.1|538530_539217_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
>prophage 38
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	542957	543584	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|542957_543584_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 39
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	552909	553788	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|552909_553788_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 40
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	592739	602129	2863573		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|592739_593444_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|593688_593883_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|593894_594146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404645.1|594183_595308_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|595323_595761_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934894.1|596184_597141_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|597340_597820_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|597834_598674_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159903.1|598759_599293_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|599285_599714_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_160199167.1|599725_600226_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|600225_600447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342132.1|600638_602129_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
>prophage 41
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	605539	607551	2863573		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|605539_606199_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|606195_607551_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 42
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	613716	614508	2863573		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|613716_614508_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 43
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	618048	623079	2863573	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|618048_619185_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|619216_619846_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|619864_620134_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|620296_620605_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|620775_620976_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|621172_621574_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|621813_623079_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 44
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	631126	632728	2863573		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|631126_632728_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 45
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	637817	641271	2863573		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|637817_638669_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|638675_639317_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|639456_641271_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 46
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	644685	645387	2863573		Tupanvirus(100.0%)	1	NA	NA
WP_000571259.1|644685_645387_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.0e-13
>prophage 47
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	653483	655838	2863573		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153613.1|653483_654266_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	2.7e-27
WP_000173833.1|654267_655266_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.9	8.5e-34
WP_000604816.1|655271_655838_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 48
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	660156	661419	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|660156_661419_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 49
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	671078	675472	2863573		Bacillus_phage(50.0%)	2	NA	NA
WP_001289546.1|671078_673481_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.4	1.8e-93
WP_031771138.1|673480_675472_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 50
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	681463	683110	2863573		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|681463_683110_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 51
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	686779	687901	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691301.1|686779_687901_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 52
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	692052	697708	2863573		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|692052_692676_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380730.1|693055_693919_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|693992_694097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688122.1|694093_695071_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|695227_695497_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|695950_696100_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|696190_697708_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 53
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	707846	712122	2863573		Bacillus_phage(50.0%)	6	NA	NA
WP_000841346.1|707846_708380_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|708518_708707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|708819_709422_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670307.1|709418_710510_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603970.1|710513_711245_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|711213_712122_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 54
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	716505	720809	2863573	head	Staphylococcus_phage(80.0%)	8	NA	NA
WP_000899334.1|716505_716742_-|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.6	2.3e-22
WP_000956747.1|716787_717039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|717166_717271_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|717781_717967_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|718390_718501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|719200_719407_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001795785.1|719700_719925_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	5.0e-19
WP_001791958.1|720611_720809_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.1e-09
>prophage 55
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	725878	726355	2863573		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|725878_726355_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 56
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	732297	738779	2863573		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|732297_733116_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|733590_734133_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516269.1|734138_736148_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.0	4.8e-60
WP_000073352.1|736160_738779_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 57
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	748193	749237	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|748193_749237_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 58
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	753435	758976	2863573		Bacillus_virus(33.33%)	4	NA	NA
WP_000664775.1|753435_754722_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.4	7.9e-16
WP_000089941.1|754721_755987_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|756017_756731_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001811366.1|756735_758976_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 59
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	764116	775929	2863573	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864190.1|764116_765088_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282298.1|765102_766020_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|766188_766539_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|766924_769042_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|769046_769364_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|769360_769645_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097460.1|769665_770841_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036633.1|770861_771329_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001801936.1|771618_775929_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 60
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	780202	780973	2863573		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|780202_780973_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 61
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	785752	799426	2863573	tRNA,protease	Erwinia_phage(16.67%)	10	NA	NA
WP_000379054.1|785752_787156_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|787221_787767_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015601.1|787763_788660_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	3.6e-31
WP_000195254.1|789077_790385_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|790540_792616_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000672869.1|793836_795081_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041666.1|795108_796227_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110253.1|796453_797362_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|797383_798550_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176393.1|798658_799426_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 62
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	812810	815060	2863573		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|812810_813542_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|813657_813891_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|814325_815060_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 63
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	825430	827425	2863573		Moumouvirus(100.0%)	1	NA	NA
WP_000579563.1|825430_827425_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 64
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	830572	831508	2863573	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|830572_831508_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 65
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	836520	838777	2863573		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|836520_837720_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|837935_838154_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|838153_838777_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 66
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	842091	842703	2863573		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|842091_842703_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 67
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	846670	851281	2863573		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|846670_847771_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|847772_849047_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|849064_849946_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|849973_851281_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 68
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	855745	858499	2863573	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|855745_858499_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 69
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	878082	878271	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245796.1|878082_878271_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	2.5e-19
>prophage 70
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	887287	889247	2863573		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|887287_887512_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|887468_887615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857488.1|888287_889247_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.3	7.4e-35
>prophage 71
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	904877	909435	2863573		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|904877_905192_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249272.1|905364_907713_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	3.2e-15
WP_000161938.1|907722_909435_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
>prophage 72
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	914303	915362	2863573	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|914303_915362_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 73
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	927308	930216	2863573		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|927308_927791_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|927792_928335_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|928404_928794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|928796_929051_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757575.1|929289_930216_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	2.2e-12
>prophage 74
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	941733	943581	2863573		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182653.1|941733_943581_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 75
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	951713	960546	2863573		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|951713_952808_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|952820_953360_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|953503_953779_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|953946_955353_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863439.1|955356_956649_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|956739_957717_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|957720_958833_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668336.1|959003_959630_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957037.1|959994_960546_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.0	1.6e-13
>prophage 76
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	966558	970938	2863573		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|966558_966792_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040051.1|967028_968747_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|968749_969016_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|969169_969712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685067.1|969765_970938_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
>prophage 77
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	974369	989131	2863573		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921965.1|974369_975770_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|975762_976569_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101899.1|976835_978083_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709277.1|978104_979583_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_000238669.1|979597_980164_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030811.1|980166_981195_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483720.1|981187_982672_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_160199171.1|982650_984840_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.0	9.3e-142
WP_000666806.1|984832_985504_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|985505_985769_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|985768_986473_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010413.1|986476_987601_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861573.1|987587_988070_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225836.1|988270_989131_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	4.4e-39
>prophage 78
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	999585	1003332	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074534.1|999585_1003332_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 79
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1006998	1036960	2863573	bacteriocin,protease,transposase	Staphylococcus_phage(16.67%)	32	NA	NA
WP_000676537.1|1006998_1008009_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.2e-16
WP_001089094.1|1008090_1009272_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284458.1|1009309_1009639_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184945.1|1009876_1010698_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150197.1|1010690_1011494_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526694.1|1011480_1013154_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_001816819.1|1013140_1014352_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_001791731.1|1014428_1014533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070966.1|1014683_1015622_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|1015673_1016225_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|1016314_1016605_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_001790177.1|1016668_1016800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1016845_1017805_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766008.1|1018292_1018649_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1018737_1018875_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1019015_1019306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1019393_1020035_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_000668627.1|1020031_1020352_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870829.1|1020354_1022319_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001797239.1|1022362_1022635_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001792055.1|1022644_1022746_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033865.1|1023661_1024264_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1024278_1024455_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668818.1|1024653_1025640_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1025720_1025939_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1026148_1026718_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001557163.1|1027138_1028458_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000414165.1|1028724_1030236_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021865.1|1030374_1031733_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001795272.1|1031749_1034074_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1034292_1035096_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049950.1|1035397_1036960_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 80
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1055892	1057701	2863573		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1055892_1057701_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 81
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1063512	1065482	2863573		Bacillus_virus(100.0%)	2	NA	NA
WP_000427767.1|1063512_1064493_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.3e-15
WP_001067052.1|1064495_1065482_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
>prophage 82
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1069133	1071147	2863573		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|1069133_1070075_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|1070064_1071147_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 83
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1079738	1086548	2863573		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|1079738_1080884_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047069.1|1080993_1081863_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353954.1|1081921_1084531_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044230.1|1084733_1086548_-	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 84
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1091667	1095321	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000154921.1|1091667_1095321_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	2.0e-24
>prophage 85
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1105475	1112656	2863573		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|1105475_1106405_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_000138487.1|1106931_1108176_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167309.1|1108284_1109475_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.0e-33
WP_000838029.1|1109782_1110910_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1111270_1111648_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035063.1|1112062_1112656_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 86
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1122576	1126204	2863573		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009692.1|1122576_1124052_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	4.5e-47
WP_000046076.1|1124182_1125391_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143495.1|1125844_1126204_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.7e-14
>prophage 87
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1130247	1132916	2863573		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1130247_1131462_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129659.1|1131458_1132916_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	2.6e-39
>prophage 88
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1136142	1194727	2863573	capsid,portal,plate,head,tail,transposase,holin,terminase,integrase	Staphylococcus_phage(79.1%)	81	1159142:1159158	1194343:1194359
WP_001557163.1|1136142_1137462_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000598444.1|1137667_1138051_-	YutD family protein	NA	NA	NA	NA	NA
WP_000201875.1|1138180_1139098_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_001241246.1|1139181_1140501_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000927632.1|1140527_1141355_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000608129.1|1141367_1142216_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_016170465.1|1142263_1142347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000267236.1|1142557_1143625_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_000582326.1|1143638_1144679_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000274029.1|1145043_1145358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000051376.1|1145977_1146592_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	100.0	1.0e-109
WP_000861038.1|1147230_1147986_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1147997_1148252_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000398878.1|1148308_1148704_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000276641.1|1148708_1149947_-|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	100.0	3.5e-210
WP_050970951.1|1149959_1151858_-	CHAP domain-containing protein	NA	I1W630	Staphylococcus_phage	99.4	0.0e+00
WP_000466777.1|1151994_1152294_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_000782200.1|1152333_1152507_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|1152510_1152888_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_160199084.1|1152887_1154711_-|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.5	0.0e+00
WP_160199173.1|1154710_1156621_-	hypothetical protein	NA	A0EWM6	Staphylococcus_virus	99.5	0.0e+00
WP_000156406.1|1156635_1158537_-	peptidase	NA	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
WP_000350680.1|1158545_1159493_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
1159142:1159158	attL	TGTTTTTATCTAATTTC	NA	NA	NA	NA
WP_160199174.1|1159505_1162973_-	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	97.6	2.1e-268
WP_000105584.1|1162989_1163334_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100161.1|1163363_1163729_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_015977705.1|1163791_1164373_-|tail	phage major tail protein, TP901-1 family	tail	Q4ZDE5	Staphylococcus_virus	100.0	8.3e-106
WP_000188653.1|1164391_1164775_-	hypothetical protein	NA	Q8SDU1	Staphylococcus_phage	100.0	2.6e-68
WP_001017811.1|1164786_1165134_-	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	100.0	5.3e-60
WP_009560319.1|1165133_1165436_-	hypothetical protein	NA	S4SUQ1	Staphylococcus_phage	100.0	8.8e-51
WP_000208960.1|1165432_1165765_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114086.1|1165773_1166061_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	98.9	1.4e-45
WP_033863203.1|1166082_1167057_-|capsid	phage major capsid protein	capsid	A0EWT0	Staphylococcus_virus	99.7	4.8e-183
WP_064428676.1|1167070_1167685_-	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	99.0	2.9e-40
WP_001824752.1|1167816_1167990_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000921887.1|1169074_1170610_-|portal	phage portal protein	portal	A1KX25	Staphylococcus_virus	100.0	5.8e-292
WP_000169944.1|1170620_1171898_-|terminase	PBSX family phage terminase large subunit	terminase	Q8SDU9	Staphylococcus_phage	100.0	3.0e-249
WP_001566315.1|1171884_1172325_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	2.4e-73
WP_000058632.1|1172511_1172931_-	transcriptional regulator	NA	I1W651	Staphylococcus_phage	100.0	8.1e-71
WP_000990003.1|1172945_1173092_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	97.9	2.9e-15
WP_052774195.1|1173092_1173281_-	transcriptional regulator	NA	Q77FU4	Staphylococcus_phage	98.4	1.1e-24
WP_001125015.1|1173268_1173469_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_160199175.1|1173443_1173632_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	96.8	2.3e-25
WP_000185706.1|1173668_1174199_-	hypothetical protein	NA	I1W653	Staphylococcus_phage	100.0	9.2e-96
WP_000097971.1|1174191_1174398_-	hypothetical protein	NA	A0A1W6JNF7	Staphylococcus_phage	81.2	1.6e-24
WP_001065066.1|1174397_1174640_-	DUF1024 family protein	NA	E9LT37	Staphylococcus_phage	100.0	4.4e-37
WP_033861700.1|1174632_1175022_-	hypothetical protein	NA	I1W604	Staphylococcus_phage	78.3	1.3e-49
WP_000979209.1|1175018_1175366_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_031764170.1|1175362_1175764_-	hypothetical protein	NA	A0A2I6PDC0	Staphylococcus_phage	97.0	8.6e-70
WP_073546265.1|1175778_1176027_-	hypothetical protein	NA	A0A2I6PDB4	Staphylococcus_phage	93.9	2.8e-39
WP_000022723.1|1176026_1176281_-	DUF3310 domain-containing protein	NA	A0A2K9VBW1	Staphylococcus_phage	97.6	1.4e-41
WP_000907344.1|1176280_1176898_-	hypothetical protein	NA	A0A059T7P3	Staphylococcus_phage	99.0	2.8e-83
WP_001187246.1|1176898_1177084_-	DUF3113 family protein	NA	A0A1X9H053	Staphylococcus_phage	96.7	1.2e-26
WP_000049801.1|1177088_1177493_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	99.3	2.1e-68
WP_001123693.1|1177503_1177725_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	97.3	3.2e-34
WP_000628839.1|1177737_1177896_-	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
WP_000443353.1|1177892_1178678_-	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	100.0	1.9e-145
WP_160199176.1|1178690_1179422_-	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	78.3	2.2e-79
WP_000371251.1|1179485_1180334_+	DUF4393 domain-containing protein	NA	W5R9J9	Staphylococcus_phage	99.6	1.1e-159
WP_160199177.1|1180440_1181112_-	hypothetical protein	NA	W5R8I8	Staphylococcus_phage	99.6	6.8e-128
WP_078068306.1|1181124_1181625_-	single-stranded DNA-binding protein	NA	A0A0H3U303	Staphylococcus_phage	100.0	5.5e-90
WP_042747308.1|1181709_1182489_-	ATP-binding protein	NA	A0A0H3U4V6	Staphylococcus_phage	99.6	1.5e-139
WP_001004326.1|1182492_1183026_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	100.0	9.0e-91
WP_000683290.1|1183018_1183270_-	hypothetical protein	NA	A0A0H3U2S3	Staphylococcus_phage	100.0	2.6e-40
WP_042747310.1|1183279_1183540_-	DUF1108 family protein	NA	A1KX65	Staphylococcus_virus	98.8	1.2e-43
WP_000219666.1|1183631_1183952_-	hypothetical protein	NA	S4V968	Staphylococcus_phage	100.0	4.8e-55
WP_000066013.1|1183952_1184120_-	DUF1270 domain-containing protein	NA	S4V7J2	Staphylococcus_phage	96.4	4.0e-21
WP_000977378.1|1184112_1184334_-	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000993183.1|1184347_1184797_-	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
WP_000187184.1|1184836_1185061_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001148578.1|1185061_1185853_-	phage antirepressor KilAC domain-containing protein	NA	E0Y3N9	Staphylococcus_virus	100.0	6.5e-146
WP_001106628.1|1185868_1186123_-	helix-turn-helix transcriptional regulator	NA	A0A0E3T8G8	Staphylococcus_phage	100.0	8.2e-42
WP_000874713.1|1186314_1186953_+	LexA family transcriptional regulator	NA	E0Y3N7	Staphylococcus_virus	100.0	1.5e-116
WP_000896616.1|1187003_1187504_+	hypothetical protein	NA	B7T094	Staphylococcus_virus	100.0	1.1e-71
WP_000826266.1|1187507_1188023_+	hypothetical protein	NA	I1W624	Staphylococcus_phage	100.0	1.5e-37
WP_001145728.1|1188085_1189135_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	100.0	1.6e-203
WP_001074405.1|1189202_1190600_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|1190750_1191215_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807663.1|1191204_1192446_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205567.1|1192560_1193868_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1193965_1194727_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
1194343:1194359	attR	TGTTTTTATCTAATTTC	NA	NA	NA	NA
>prophage 89
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1198214	1199240	2863573		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571213.1|1198214_1199240_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
>prophage 90
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1202556	1207734	2863573		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1202556_1202913_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147952.1|1203056_1203377_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1203527_1204067_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150011.1|1204149_1204866_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.1	1.5e-16
WP_000974460.1|1205013_1205436_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1205834_1206329_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255551.1|1206483_1207101_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001802951.1|1207173_1207734_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
>prophage 91
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1211134	1212378	2863573		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1211134_1211335_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_000141557.1|1211691_1212378_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	1.7e-33
>prophage 92
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1221440	1230317	2863573		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757397.1|1221440_1222169_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001057759.1|1222360_1222507_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|1222522_1222846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085183.1|1224167_1224632_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050048.1|1224653_1227026_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001165959.1|1227059_1227800_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|1227915_1228149_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1228215_1228674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1229012_1230317_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 93
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1239544	1245475	2863573		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1239544_1240132_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1240695_1241640_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1241750_1242746_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1242742_1243654_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1244539_1245475_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 94
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1249922	1252769	2863573		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662677.1|1249922_1252769_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 95
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1256087	1256927	2863573		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000753319.1|1256087_1256927_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 96
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1264525	1270231	2863573		Streptococcus_phage(66.67%)	5	NA	NA
WP_001557172.1|1264525_1265608_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	9.9e-44
WP_000686344.1|1265971_1266838_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1266981_1267623_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258150.1|1267787_1268843_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1269160_1270231_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 97
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1281030	1304503	2863573		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1281030_1281792_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|1281788_1282745_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1282731_1283703_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1283741_1283897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1284077_1285049_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|1285166_1287272_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1287234_1287633_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|1288433_1289300_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1289319_1289820_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1290160_1291666_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|1291743_1291845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1291935_1292853_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197262.1|1293731_1294274_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1294612_1295671_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000180991.1|1295910_1297425_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589248.1|1297417_1298395_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000983677.1|1298616_1300398_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525106.1|1300409_1302293_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1302562_1304503_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 98
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1307642	1317489	2863573		Pandoravirus(12.5%)	12	NA	NA
WP_001217796.1|1307642_1308794_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|1308777_1309371_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1309721_1310390_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1310391_1310811_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1310814_1311528_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1311626_1312211_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1312490_1312931_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1313273_1313747_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1313721_1314408_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1314407_1315463_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|1315534_1316518_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931238.1|1316649_1317489_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.5	9.6e-55
>prophage 99
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1329101	1330475	2863573		Megavirus(100.0%)	1	NA	NA
WP_000952041.1|1329101_1330475_-	deoxyribodipyrimidine photo-lyase	NA	K7Y8W8	Megavirus	31.6	2.8e-43
>prophage 100
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1335452	1341732	2863573		Bacillus_phage(33.33%)	6	NA	NA
WP_000857598.1|1335452_1337126_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737160.1|1337122_1338754_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469894.1|1338972_1339848_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1340019_1340703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148826.1|1340705_1341164_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820897.1|1341165_1341732_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 101
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1348522	1348996	2863573		Pandoravirus(100.0%)	1	NA	NA
WP_000833486.1|1348522_1348996_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	1.6e-14
>prophage 102
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1354258	1355056	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1354258_1355056_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 103
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1359887	1360649	2863573		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1359887_1360649_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 104
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1365023	1366067	2863573		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030772.1|1365023_1366067_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 105
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1372590	1373388	2863573		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1372590_1373388_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 106
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1376613	1380572	2863573		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1376613_1378341_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793067.1|1378761_1380057_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1380173_1380572_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 107
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1387506	1388250	2863573		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1387506_1388250_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 108
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1400788	1401349	2863573	integrase	Streptococcus_phage(100.0%)	1	1394942:1394956	1404939:1404953
1394942:1394956	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1400788_1401349_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1400788_1401349_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1404939:1404953	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 109
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1414177	1417531	2863573		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1414177_1415188_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001792725.1|1415686_1416208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1416235_1417531_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 110
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1425103	1426426	2863573		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860592.1|1425103_1426426_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	2.6e-107
>prophage 111
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1437730	1438387	2863573		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1437730_1438387_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 112
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1442028	1445349	2863573		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1442028_1443405_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1443948_1445349_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 113
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1468637	1469300	2863573		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1468637_1469300_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 114
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1475883	1477071	2863573		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250823.1|1475883_1477071_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
>prophage 115
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1480099	1491053	2863573		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1480099_1482181_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1482303_1482774_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1482839_1483253_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1483350_1483605_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|1483741_1487338_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1487501_1491053_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 116
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1494736	1499519	2863573	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1494736_1495285_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1495297_1495480_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1495535_1495679_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872882.1|1495793_1496363_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664737.1|1496443_1496968_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1496967_1497714_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1497721_1498126_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631969.1|1498118_1499519_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.2e-54
>prophage 117
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1505530	1507987	2863573	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1505530_1507987_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 118
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1521614	1531885	2863573	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1521614_1523102_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1523154_1523247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613722.1|1523640_1524117_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1524113_1524479_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167944.1|1524456_1525260_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	3.0e-21
WP_000057594.1|1525475_1526408_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148598.1|1526586_1527468_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1527695_1529789_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1530045_1530585_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176709.1|1530589_1531885_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 119
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1541141	1543606	2863573		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1541141_1542107_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252543.1|1542253_1543606_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 120
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1549512	1552610	2863573	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051136.1|1549512_1551486_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.0	3.2e-93
WP_000279926.1|1551770_1552610_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 121
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1556516	1557134	2863573		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1556516_1557134_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 122
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1566273	1567971	2863573		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1566273_1567971_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 123
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1584619	1590858	2863573		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1584619_1585624_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825530.1|1585955_1586798_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1586834_1587494_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569281.1|1587497_1588523_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.7e-32
WP_001036648.1|1588817_1589960_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634098.1|1589952_1590858_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.8e-49
>prophage 124
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1616804	1619564	2863573		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072584.1|1616804_1618016_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	2.2e-44
WP_031770049.1|1618019_1619564_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.9	1.8e-285
>prophage 125
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1632100	1637549	2863573	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1632100_1632373_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041880.1|1632771_1633476_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_000551643.1|1633867_1634404_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|1634516_1636058_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1636082_1637549_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 126
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1646509	1648033	2863573		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930514.1|1646509_1648033_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 127
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1656347	1662676	2863573		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1656347_1656851_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1656871_1657168_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052484.1|1657411_1657603_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001218732.1|1657688_1658786_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1658797_1659001_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373073.1|1659030_1659912_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001557587.1|1660065_1660911_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655692.1|1661572_1662676_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 128
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1672614	1673457	2863573		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209551.1|1672614_1673457_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.8e-11
>prophage 129
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1696701	1697502	2863573		Tupanvirus(100.0%)	1	NA	NA
WP_000449069.1|1696701_1697502_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.4	5.8e-41
>prophage 130
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1701899	1747086	2863573	capsid,portal,plate,head,tail,protease,holin,terminase,integrase	Staphylococcus_phage(92.19%)	64	1701654:1701671	1747180:1747197
1701654:1701671	attL	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
WP_000971220.1|1701899_1702355_-	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
WP_000448197.1|1702351_1702939_-	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_000930258.1|1703329_1704784_-	CHAP domain-containing protein	NA	A0A0N6WMR3	Staphylococcus_phage	100.0	3.0e-290
WP_000339146.1|1704795_1705098_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1705233_1705533_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1705578_1705743_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1705735_1706125_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031767589.1|1706124_1707591_-|plate	BppU family phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	98.8	2.7e-254
WP_000429558.1|1707590_1709501_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1709516_1709807_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1709806_1711390_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1711398_1712223_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_111034154.1|1712222_1718399_-|tail	phage tail tape measure protein	tail	A0A2I6PDS2	Staphylococcus_phage	99.4	0.0e+00
WP_000438833.1|1718412_1718571_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1718621_1718963_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_000169128.1|1719020_1719476_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1719567_1720209_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1720243_1720639_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110021.1|1720639_1721041_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	99.2	1.8e-67
WP_000395498.1|1721037_1721370_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1721381_1721660_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_025174076.1|1721728_1722892_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.7	1.6e-217
WP_031767595.1|1722903_1723677_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	97.3	1.2e-133
WP_020444675.1|1723660_1724899_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	98.1	2.7e-231
WP_000153538.1|1724903_1726595_-|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	99.5	0.0e+00
WP_031767599.1|1726584_1726890_-|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	99.0	6.4e-49
WP_000166257.1|1727015_1727336_-	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_000513699.1|1727496_1727934_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_078066162.1|1727946_1729314_-	DEAD/DEAH box helicase	NA	A0A2I6PDQ0	Staphylococcus_phage	99.8	1.3e-263
WP_000665204.1|1729294_1729585_-	VRR-NUC domain-containing protein	NA	A0A2I6PDQ7	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|1729718_1729823_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_094611253.1|1729925_1730981_-	hypothetical protein	NA	A0A2I6PDP5	Staphylococcus_phage	99.4	4.0e-207
WP_000265258.1|1732424_1732625_-	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_031767608.1|1732692_1732845_-	transcriptional regulator	NA	Q4ZCN4	Staphylococcus_virus	98.0	3.4e-19
WP_001072794.1|1732837_1733041_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_000132920.1|1733037_1733232_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_000195785.1|1733228_1733435_-	DUF1381 domain-containing protein	NA	A0A0F6N4I4	Staphylococcus_phage	100.0	1.1e-20
WP_000185651.1|1733471_1734002_-	dUTP pyrophosphatase	NA	A0A0F6N3L0	Staphylococcus_phage	100.0	1.7e-94
WP_000028421.1|1733994_1734177_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
WP_031766094.1|1734166_1734418_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	98.8	4.1e-38
WP_031895322.1|1734410_1734719_-	hypothetical protein	NA	C8CH03	Staphylococcus_phage	98.0	8.1e-52
WP_000979209.1|1734715_1735063_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_111023884.1|1735127_1735376_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	97.6	1.4e-41
WP_000111487.1|1735375_1735630_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	3.7e-42
WP_001164629.1|1736028_1736214_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1736226_1738179_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1738247_1738805_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762534.1|1738830_1739997_-	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	99.7	7.0e-221
WP_000985986.1|1739993_1740356_-	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	100.0	2.2e-56
WP_000175000.1|1740370_1740694_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_001285954.1|1740772_1740934_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1740946_1741210_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1741234_1741450_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_000642492.1|1741505_1741715_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1741704_1741848_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000435360.1|1741862_1742306_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000639923.1|1742318_1742561_-	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001083975.1|1742724_1743441_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|1743452_1744307_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000109189.1|1744523_1744709_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1744779_1744962_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1744997_1745144_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1745140_1745755_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_160199183.1|1745880_1747086_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	3.6e-220
1747180:1747197	attR	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
>prophage 131
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1761268	1761946	2863573		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1761268_1761946_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 132
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1777616	1782056	2863573		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549287.1|1777616_1782056_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	25.6	6.3e-28
>prophage 133
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1792661	1794323	2863573		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570070.1|1792661_1793321_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736784.1|1793372_1794323_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 134
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1803121	1804558	2863573		Pandoravirus(100.0%)	1	NA	NA
WP_160199184.1|1803121_1804558_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	6.3e-30
>prophage 135
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1808318	1812857	2863573		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1808318_1810058_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608818.1|1810317_1810992_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975351.1|1811135_1812857_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 136
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1822184	1823228	2863573		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645608.1|1822184_1823228_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	3.5e-14
>prophage 137
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1830442	1831972	2863573		Vibrio_phage(100.0%)	1	NA	NA
WP_000838205.1|1830442_1831972_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	50.7	4.5e-10
>prophage 138
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1840847	1842353	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008400.1|1840847_1842353_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 139
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1853460	1858819	2863573		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1853460_1855710_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1856297_1857266_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_160199186.1|1857262_1858819_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 140
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1869029	1871089	2863573		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818915.1|1869029_1870127_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166920.1|1870510_1871089_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.1	9.7e-14
>prophage 141
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1879638	1882826	2863573		Planktothrix_phage(33.33%)	3	NA	NA
WP_000067352.1|1879638_1881231_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
WP_000794565.1|1881740_1881938_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
WP_160199187.1|1882103_1882826_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	4.1e-22
>prophage 142
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1886697	1887378	2863573		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571407.1|1886697_1887378_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	2.9e-33
>prophage 143
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1904183	1905368	2863573		Klosneuvirus(100.0%)	1	NA	NA
WP_001084442.1|1904183_1905368_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	2.0e-34
>prophage 144
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1910204	1920488	2863573		Tupanvirus(50.0%)	3	NA	NA
WP_000605281.1|1910204_1917380_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.7	4.5e-68
WP_000826861.1|1917826_1919077_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706135.1|1919462_1920488_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.5	8.5e-29
>prophage 145
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1924023	1927253	2863573		Bacillus_virus(50.0%)	4	NA	NA
WP_000590855.1|1924023_1924764_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	2.5e-38
WP_000171919.1|1925105_1925618_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1925796_1926000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013485.1|1926293_1927253_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 146
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1930594	1933079	2863573		Catovirus(50.0%)	2	NA	NA
WP_000723436.1|1930594_1931740_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	25.9	4.6e-23
WP_000779504.1|1931816_1933079_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	4.3e-22
>prophage 147
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1939914	1946479	2863573		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1939914_1941039_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028283.1|1941042_1942152_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1942164_1943193_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940790.1|1943182_1945006_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	5.2e-29
WP_000565304.1|1945025_1945790_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037332.1|1945792_1946479_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 148
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1950499	1951675	2863573		Clostridium_phage(100.0%)	1	NA	NA
WP_000469833.1|1950499_1951675_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.6	2.0e-29
>prophage 149
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1957114	1957888	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1957114_1957888_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 150
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1965919	1966519	2863573		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1965919_1966519_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 151
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1971456	1976553	2863573		Catovirus(50.0%)	6	NA	NA
WP_001793242.1|1971456_1972437_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
WP_001789407.1|1972506_1972629_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000183771.1|1972772_1973549_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414629.1|1973760_1974387_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1974582_1975347_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223713.1|1975350_1976553_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 152
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	1984819	1989029	2863573		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1984819_1985800_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1986030_1987023_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924990.1|1987038_1988034_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136633.1|1988030_1989029_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.8	5.2e-15
>prophage 153
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2022112	2023177	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816133.1|2022112_2023177_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.8	7.7e-09
>prophage 154
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2033865	2040519	2863573		Streptococcus_phage(50.0%)	4	NA	NA
WP_000852430.1|2033865_2035887_-	K(+)-transporting ATPase subunit B	NA	E4ZFI9	Streptococcus_phage	29.0	6.6e-41
WP_000029431.1|2035905_2037582_-	potassium-transporting ATPase subunit A	NA	NA	NA	NA	NA
WP_000631574.1|2037602_2037683_-	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_160199190.1|2037849_2040519_+	sensor histidine kinase KdpD	NA	A0A2K9L0Z8	Tupanvirus	21.5	6.0e-10
>prophage 155
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2048301	2054633	2863573	transposase	Bacillus_phage(66.67%)	7	NA	NA
WP_000815646.1|2048301_2049651_+	recombinase family protein	NA	Q9T200	Bacillus_phage	25.1	1.4e-18
WP_001186602.1|2049672_2051301_+	recombinase family protein	NA	A0A0S2SXR4	Bacillus_phage	31.4	2.4e-46
WP_000859155.1|2051818_2052169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000700853.1|2052255_2052567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001092169.1|2052584_2053091_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_000659050.1|2053111_2053429_+	RadC family protein	NA	NA	NA	NA	NA
WP_000868132.1|2053547_2054633_+|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
>prophage 156
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2057964	2058696	2863573		Streptococcus_phage(100.0%)	1	NA	NA
WP_001072201.1|2057964_2058696_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
>prophage 157
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2071220	2071895	2863573	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001106057.1|2071220_2071895_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
>prophage 158
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2077550	2087560	2863573		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2077550_2078351_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104165.1|2078739_2079528_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|2079528_2080863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2080855_2082682_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2082694_2083396_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|2084598_2085882_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|2086159_2087560_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 159
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2094250	2103296	2863573	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884332.1|2094250_2095537_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
WP_000177465.1|2095915_2097430_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.2e-90
WP_000449218.1|2097755_2098568_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819067.1|2098655_2101325_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	4.6e-119
WP_000255578.1|2101361_2103296_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 160
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2113396	2119953	2863573		Faecalibacterium_phage(25.0%)	8	NA	NA
WP_000742837.1|2113396_2114236_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2114686_2115040_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2115107_2115503_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054128.1|2115762_2116332_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2116449_2116650_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_000672033.1|2117041_2117233_-	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_000143647.1|2117324_2119205_-	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000154162.1|2119194_2119953_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 161
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2134206	2135919	2863573		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138654.1|2134206_2135919_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 162
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2141547	2142561	2863573		Faustovirus(100.0%)	1	NA	NA
WP_000639184.1|2141547_2142561_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 163
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2154900	2155593	2863573		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185863.1|2154900_2155593_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 164
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2181691	2183551	2863573		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125628.1|2181691_2183551_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 165
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2209216	2210967	2863573		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143425.1|2209216_2210104_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2210211_2210967_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 166
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2214387	2214885	2863573		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2214387_2214885_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 167
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2219879	2222263	2863573		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071729.1|2219879_2221730_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	9.3e-236
WP_000173331.1|2221726_2222263_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 168
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2227141	2231856	2863573	holin	Klosneuvirus(50.0%)	4	NA	NA
WP_000066521.1|2227141_2228851_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2229128_2229341_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028775.1|2229620_2230064_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172341.1|2230257_2231856_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
>prophage 169
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2235750	2238775	2863573		Prochlorococcus_phage(50.0%)	3	NA	NA
WP_001031409.1|2235750_2236641_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237629.1|2236763_2237180_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030072.1|2237437_2238775_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
>prophage 170
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2269108	2272897	2863573		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000751263.1|2269108_2269810_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	5.2e-38
WP_000379821.1|2271085_2272897_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 171
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2281331	2285446	2863573		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161369.1|2281331_2282330_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	1.0e-34
WP_000076661.1|2282420_2282627_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024139.1|2283037_2285446_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	3.2e-127
>prophage 172
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2294687	2297723	2863573	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058993.1|2294687_2296793_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455988.1|2297201_2297723_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 173
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2304149	2310533	2863573		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062663.1|2304149_2305889_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473679.1|2306189_2308256_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206031.1|2308635_2309046_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|2309087_2309444_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228167.1|2309564_2310533_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	4.0e-12
>prophage 174
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2319822	2320815	2863573		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_160199194.1|2319822_2320815_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 175
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2330093	2330789	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000538625.1|2330093_2330789_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	3.0e-38
>prophage 176
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2349539	2350406	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|2349539_2350406_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 177
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2358591	2363787	2863573		Streptococcus_phage(50.0%)	3	NA	NA
WP_075339662.1|2358591_2360400_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.3	6.6e-93
WP_000755946.1|2360531_2360924_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_160199196.1|2360925_2363787_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	3.1e-28
>prophage 178
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2371629	2372325	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000217456.1|2371629_2372325_+	oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	4.3e-08
>prophage 179
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2376879	2377698	2863573		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824948.1|2376879_2377698_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	27.2	1.3e-08
>prophage 180
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2385750	2387308	2863573		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173871.1|2385750_2386566_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	8.8e-13
WP_000598772.1|2386558_2387308_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	9.0e-20
>prophage 181
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2394579	2399008	2863573		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923526.1|2394579_2395242_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.5e-21
WP_000072149.1|2395234_2396011_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026189.1|2396406_2397594_+	DHA family class C beta-lactamase	NA	NA	NA	NA	NA
WP_000700925.1|2397655_2399008_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
>prophage 182
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2402402	2404261	2863573		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948974.1|2402402_2403629_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2403625_2404261_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 183
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2421988	2428250	2863573		Bacillus_phage(66.67%)	5	NA	NA
WP_001176863.1|2421988_2423131_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779360.1|2423398_2423785_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482652.1|2423918_2424026_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064825.1|2424728_2426492_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.5e-36
WP_000486487.1|2426516_2428250_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
>prophage 184
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2431711	2437482	2863573		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971550.1|2431711_2432827_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
WP_000286875.1|2432837_2433530_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200956.1|2433540_2434008_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000783428.1|2434059_2435037_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916704.1|2435038_2435986_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
WP_000594519.1|2436552_2437482_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 185
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2445539	2446271	2863573		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2445539_2446271_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 186
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2462920	2464480	2863573		Escherichia_phage(100.0%)	1	NA	NA
WP_000692648.1|2462920_2464480_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 187
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2485808	2486843	2863573		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|2485808_2486843_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 188
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2496689	2500586	2863573		Hokovirus(33.33%)	4	NA	NA
WP_000477338.1|2496689_2498063_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	2.3e-13
WP_000249497.1|2498055_2498730_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2498865_2499921_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229920.1|2499920_2500586_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.6e-36
>prophage 189
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2504322	2505531	2863573		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2504322_2505531_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 190
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2517621	2518521	2863573		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524830.1|2517621_2518521_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 191
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2525893	2526313	2863573		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|2525893_2526313_-	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 192
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2532005	2532887	2863573		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000235289.1|2532005_2532887_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 193
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2540765	2541401	2863573		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2540765_2541401_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 194
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2554344	2558324	2863573		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011447058.1|2554344_2554983_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000684147.1|2555293_2556418_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	9.3e-13
WP_000417018.1|2556509_2557463_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	6.4e-31
WP_000737705.1|2557823_2558324_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 195
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2562241	2563045	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2562241_2563045_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 196
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2582025	2582631	2863573		Pithovirus(100.0%)	1	NA	NA
WP_000913024.1|2582025_2582631_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.1	4.3e-12
>prophage 197
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2594601	2597769	2863573		Leptospira_phage(100.0%)	1	NA	NA
WP_000592307.1|2594601_2597769_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	1.1e-61
>prophage 198
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2621452	2623119	2863573		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389658.1|2621452_2622262_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	1.7e-19
WP_000155387.1|2622258_2623119_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 199
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2631902	2639558	2863573		Enterobacteria_phage(33.33%)	7	NA	NA
WP_000411031.1|2631902_2632919_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.7	1.0e-18
WP_000655241.1|2633492_2633675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130149.1|2634168_2635833_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	8.0e-45
WP_000186134.1|2635869_2636574_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769705.1|2636957_2637383_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044362.1|2637677_2638493_+	hydrolase	NA	NA	NA	NA	NA
WP_001044441.1|2638703_2639558_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
>prophage 200
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2642940	2645250	2863573		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001015500.1|2642940_2643789_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_000875476.1|2644021_2644225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791678.1|2644311_2644473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001557494.1|2644509_2645250_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.9	1.5e-14
>prophage 201
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2651570	2652983	2863573		Pandoravirus(100.0%)	1	NA	NA
WP_000169224.1|2651570_2652983_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 202
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2656946	2658509	2863573		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2656946_2658509_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 203
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2668711	2669680	2863573		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2668711_2669680_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 204
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2687132	2688041	2863573		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2687132_2688041_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 205
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2691632	2699078	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001048259.1|2691632_2699078_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.5	3.9e-22
>prophage 206
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2705334	2708154	2863573		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334463.1|2705334_2707140_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.8	5.2e-98
WP_000908182.1|2707371_2708154_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.3e-09
>prophage 207
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2719334	2723165	2863573		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2719334_2719778_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2719898_2720609_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083318.1|2720922_2721585_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242311.1|2721863_2723165_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
>prophage 208
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2731105	2732716	2863573		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2731105_2732716_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 209
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2740519	2748269	2863573		Bacillus_virus(25.0%)	9	NA	NA
WP_000273358.1|2740519_2741119_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2741119_2742196_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248732.1|2742182_2743019_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_015445903.1|2743051_2744149_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.3	2.3e-40
WP_000697334.1|2744145_2744565_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654184.1|2744671_2745196_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2745222_2746461_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2746488_2747118_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2747141_2748269_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 210
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2758673	2759069	2863573		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2758673_2759069_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 211
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2765340	2765988	2863573		Moumouvirus(100.0%)	1	NA	NA
WP_001187630.1|2765340_2765988_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	8.0e-09
>prophage 212
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2773188	2774709	2863573		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2773188_2774709_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 213
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2781899	2783927	2863573		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546611.1|2781899_2783927_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 214
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2789076	2792460	2863573		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2789076_2789439_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_160199200.1|2789787_2790789_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2790907_2791234_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2791235_2791715_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041111.1|2791689_2792460_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	2.2e-21
>prophage 215
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2806578	2811302	2863573		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094583.1|2806578_2808108_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2808137_2809157_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2809278_2809533_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047811.1|2809532_2811302_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	7.0e-63
>prophage 216
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2815062	2829123	2863573	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159042.1|2815062_2816088_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	3.4e-62
WP_000106332.1|2816402_2818013_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	1.9e-19
WP_001792272.1|2818101_2818230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602057.1|2818374_2820303_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001283612.1|2820555_2821191_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072414299.1|2821545_2822574_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581076.1|2822633_2822858_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052270.1|2823065_2824316_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
WP_000790331.1|2824498_2825449_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141432.1|2825597_2827082_+	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	26.5	2.3e-19
WP_001253312.1|2827078_2828038_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2828406_2829123_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 217
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2836304	2838281	2863573		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2836304_2836589_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240655.1|2836664_2838281_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
>prophage 218
NZ_CP047854	Staphylococcus aureus strain UP_1525 chromosome, complete genome	2863573	2842172	2863103	2863573	integrase	Staphylococcus_phage(97.22%)	38	2845015:2845029	2854718:2854732
WP_000791411.1|2842172_2843228_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2843249_2844266_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2845015:2845029	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857180.1|2845384_2846422_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000427213.1|2846484_2846727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001558608.1|2846737_2847721_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000694772.1|2847820_2848003_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_000591749.1|2848206_2848548_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2848553_2849486_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2849501_2850215_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000854072.1|2850348_2850612_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2850627_2850843_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128909.1|2850831_2851161_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001148605.1|2851211_2851964_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148856.1|2851979_2852177_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_000762521.1|2852163_2852544_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2852598_2852922_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2852918_2853080_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2853174_2853477_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2853481_2853742_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2853750_2854014_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700554.1|2854022_2855966_+	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
2854718:2854732	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000180600.1|2855967_2856888_+	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_064135358.1|2856968_2857586_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000934759.1|2857586_2858057_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_000148333.1|2858086_2858980_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338528.1|2858986_2859205_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401969.1|2859213_2859618_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000101279.1|2859630_2860002_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000111491.1|2860001_2860259_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000178987.1|2860255_2860504_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_001065108.1|2860518_2860764_+	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000185693.1|2860760_2861297_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001282077.1|2861333_2861579_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000195784.1|2861575_2861782_+	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_000595265.1|2861778_2861928_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001557462.1|2861927_2862128_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2862155_2862572_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|2862803_2863103_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
