The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	0	24288	2821898	capsid,holin,terminase,protease,portal,head,tail	Staphylococcus_phage(96.3%)	28	NA	NA
WP_000625087.1|0_1662_+|terminase	terminase large subunit	terminase	Q8LTH3	Staphylococcus_phage	100.0	0.0e+00
WP_000025266.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	99.7	3.0e-219
WP_031897301.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	99.6	3.0e-129
WP_000154567.1|3608_4754_+|capsid	phage major capsid protein	capsid	A0A1W6JPL4	Staphylococcus_phage	100.0	1.9e-215
WP_000238240.1|4773_5058_+	hypothetical protein	NA	A0A1W6JPL8	Staphylococcus_phage	100.0	2.3e-45
WP_000150936.1|5047_5332_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5315_5678_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114341.1|5674_6079_+	hypothetical protein	NA	A0A1W6JPJ1	Staphylococcus_phage	100.0	2.5e-69
WP_000565498.1|6075_6483_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268736.1|6483_7128_+|tail	phage tail protein	tail	Q6R871	Staphylococcus_virus	100.0	6.5e-120
WP_071621395.1|7169_7394_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_031906184.1|7443_7794_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	99.1	1.3e-58
WP_114638000.1|8038_12568_+|tail	phage tail tape measure protein	tail	W5R8I2	Staphylococcus_phage	98.5	0.0e+00
WP_000567408.1|12564_14049_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_000582165.1|14064_17850_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_001153681.1|17839_17992_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18038_18326_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|18383_18680_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|18829_19006_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19058_19166_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19217_19472_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19483_20239_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|20429_20921_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|21447_21906_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|22000_22450_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|23134_23485_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23537_23798_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24108_24288_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	30222	32669	2821898		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991315.1|30222_31119_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645732.1|31119_31800_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|31796_32669_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 3
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	37914	38316	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|37914_38316_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 4
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	42511	44542	2821898		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|42511_43072_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275719.1|43444_44542_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
>prophage 5
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	48572	50856	2821898		Bacillus_virus(100.0%)	2	NA	NA
WP_000284434.1|48572_50042_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
WP_000040861.1|50034_50856_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 6
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	54546	61324	2821898		Gordonia_phage(33.33%)	5	NA	NA
WP_160200084.1|54546_55842_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|55950_56253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272063.1|56435_57128_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|57124_59317_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774552.1|59320_61324_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
>prophage 7
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	68667	73695	2821898		Catovirus(33.33%)	5	NA	NA
WP_001231458.1|68667_69615_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_160200085.1|69695_71057_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.2	5.9e-102
WP_000548777.1|71226_71757_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140179.1|72003_73074_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|73140_73695_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	77148	77562	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001643743.1|77148_77562_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.5	3.0e-17
>prophage 9
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	82599	83229	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|82599_83229_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	89258	163018	2821898	capsid,holin,terminase,integrase,tRNA,plate,portal,head,tail	Staphylococcus_phage(66.18%)	88	81100:81117	108918:108935
81100:81117	attL	ATCATCATCTTGTTCGTC	NA	NA	NA	NA
WP_031784789.1|89258_90305_-|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	99.7	3.6e-200
WP_000337827.1|90417_90597_+	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_000392183.1|90576_91509_-	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000661378.1|91725_92451_-	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	95.4	7.4e-120
WP_000775189.1|92479_93154_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	94.6	5.2e-120
WP_001055142.1|93170_93503_-	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	98.2	2.0e-56
WP_000108121.1|93765_93960_+	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	96.9	6.9e-25
WP_031880731.1|93959_94724_+	phage antirepressor KilAC domain-containing protein	NA	R4IFK0	Staphylococcus_phage	98.0	2.6e-139
WP_001148857.1|94740_94935_+	hypothetical protein	NA	A0A1X9H0A2	Staphylococcus_phage	98.4	3.3e-19
WP_000395455.1|95116_95347_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000594789.1|95417_95639_+	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000066011.1|95631_95793_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291090.1|95889_96150_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_001077280.1|96159_96381_+	DUF2483 domain-containing protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000139720.1|96373_96997_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934782.1|96996_97425_+	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	1.7e-63
WP_000240900.1|98107_98872_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.4	5.0e-143
WP_000139436.1|98864_99608_+	alpha/beta hydrolase	NA	A0A2I6PDA9	Staphylococcus_phage	99.6	2.5e-115
WP_000803056.1|99619_100399_+	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_001123688.1|100566_100788_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000049795.1|100798_101203_+	DUF1064 domain-containing protein	NA	A0A068A2B2	Staphylococcus_phage	100.0	9.6e-69
WP_001187263.1|101207_101393_+	DUF3113 family protein	NA	Q8SDV9	Staphylococcus_phage	100.0	2.4e-27
WP_000772916.1|101393_101651_+	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_015581853.1|101662_102022_+	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	97.5	7.2e-60
WP_001126839.1|102022_102271_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_000982695.1|102334_102682_+	hypothetical protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	5.9e-59
WP_061651384.1|102678_103104_+	hypothetical protein	NA	A0A1W6JPV7	Staphylococcus_phage	99.2	5.0e-68
WP_031795415.1|103060_103309_+	DUF1024 family protein	NA	B7T0H8	Staphylococcus_virus	98.8	1.6e-37
WP_061651385.1|103301_103835_+	dUTP pyrophosphatase	NA	A0A059T5A7	Staphylococcus_phage	99.4	2.7e-95
WP_031905177.1|103871_104117_+	hypothetical protein	NA	Q9B0F1	Staphylococcus_virus	88.9	3.2e-27
WP_031905176.1|104285_104519_+	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	94.7	1.4e-32
WP_000483477.1|104543_104780_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_024937262.1|104772_104946_+	transcriptional regulator	NA	A1KX88	Staphylococcus_virus	98.2	8.3e-22
WP_000990005.1|104946_105093_+	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_001647551.1|105108_105528_+	RinA family phage transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	98.6	9.0e-70
WP_001003271.1|105714_106155_+|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	100.0	4.8e-74
WP_000169946.1|106141_107419_+|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_031905175.1|107429_108965_+|portal	phage portal protein	portal	Q8SDU8	Staphylococcus_phage	99.6	7.6e-292
108918:108935	attR	GACGAACAAGATGATGAT	NA	NA	NA	NA
WP_001555735.1|108971_109967_+|head	phage head morphogenesis protein	head	Q4ZDV8	Staphylococcus_virus	100.0	5.8e-184
WP_000072206.1|110039_110210_+	hypothetical protein	NA	Q4ZDV7	Staphylococcus_virus	100.0	3.3e-23
WP_000392140.1|110318_110939_+	DUF4355 domain-containing protein	NA	Q8SDU6	Staphylococcus_phage	100.0	6.4e-64
WP_000438502.1|110952_111927_+|capsid	phage major capsid protein	capsid	Q8SDU5	Staphylococcus_phage	100.0	1.3e-183
WP_001114091.1|111948_112236_+	hypothetical protein	NA	Q8SDU4	Staphylococcus_phage	100.0	6.2e-46
WP_000208960.1|112244_112577_+|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001268312.1|112573_112876_+	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_001017815.1|112875_113223_+	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_000188649.1|113234_113618_+	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_000002577.1|113636_114218_+|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_001100163.1|114279_114645_+	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000105584.1|114674_115019_+	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_031905174.1|115035_118503_+	membrane protein	NA	Q4ZDU6	Staphylococcus_virus	95.2	6.9e-248
WP_000350680.1|118515_119463_+|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	100.0	2.1e-183
WP_000156404.1|119471_121373_+	peptidase	NA	Q4ZDD8	Staphylococcus_virus	100.0	0.0e+00
WP_031905173.1|121387_123298_+	hypothetical protein	NA	Q4ZDU1	Staphylococcus_virus	99.5	0.0e+00
WP_160200086.1|123297_125121_+|plate	BppU family phage baseplate upper protein	plate	A0A0H4ISS3	Staphylococcus_phage	99.8	0.0e+00
WP_015977952.1|125120_125498_+	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	100.0	3.6e-54
WP_001790193.1|125501_125675_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_015977953.1|125715_126015_+	DUF2951 domain-containing protein	NA	Q4ZDT6	Staphylococcus_virus	100.0	1.3e-46
WP_000524007.1|126151_128050_+	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	100.0	0.0e+00
WP_048525271.1|128062_129235_+|plate	BppU family phage baseplate upper protein	plate	A0EWN2	Staphylococcus_virus	95.4	3.2e-189
WP_000398878.1|129239_129635_+	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_000354121.1|129690_130128_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	98.6	2.0e-72
WP_031905172.1|130108_131554_+	CHAP domain-containing protein	NA	A0EWV1	Staphylococcus_virus	98.8	2.9e-293
WP_001788502.1|131797_131950_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_000139423.1|132020_132131_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_000382163.1|132117_132318_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_100250272.1|132643_132724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001005407.1|133070_133232_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163281.1|133361_133877_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000830380.1|134217_135027_+	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_001124422.1|135287_136106_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000435806.1|136083_136398_+	YfhH family protein	NA	NA	NA	NA	NA
WP_000535849.1|136412_137930_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000886472.1|137938_138775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379091.1|139035_140013_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000284755.1|140164_141202_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000251252.1|141504_142047_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_123090291.1|142337_144074_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_001236371.1|144264_145359_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001011603.1|145651_146941_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000939529.1|147021_147477_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_000869463.1|147482_148433_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000110011.1|148529_148976_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000063551.1|157772_158834_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649898.1|159092_160550_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|160536_161265_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|161400_162543_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|162547_163018_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	171921	172266	2821898		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|171921_172266_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 12
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	181854	182595	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|181854_182595_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 13
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	190458	194738	2821898		Staphylococcus_phage(80.0%)	5	NA	NA
WP_147612242.1|190458_191241_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	38.6	8.7e-34
WP_000821649.1|191522_192242_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	34.6	4.9e-23
WP_000721567.1|192276_193005_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.8	1.3e-28
WP_000764684.1|193158_193944_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	2.9e-45
WP_001235656.1|193982_194738_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	40.8	2.3e-39
>prophage 14
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	197992	268278	2821898	tRNA,protease	Staphylococcus_phage(93.02%)	63	NA	NA
WP_000711497.1|197992_199339_-	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.3	6.7e-66
WP_000595635.1|199585_200101_-	membrane protein	NA	NA	NA	NA	NA
WP_001039022.1|201115_201835_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_001038730.1|202841_203558_+|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	64.7	2.4e-86
WP_001038734.1|203721_204438_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038742.1|204607_205327_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001794363.1|205506_207246_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.2e-286
WP_000072622.1|207238_208393_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_000413389.1|208429_210247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|210508_210808_-	secretion protein	NA	NA	NA	NA	NA
WP_000619920.1|212470_212920_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001819963.1|213147_213507_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_160200087.1|213632_216053_-	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_123089997.1|217019_217463_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_160200088.1|217462_217906_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791232.1|218080_218182_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|218304_218400_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000747804.1|218850_219297_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|219489_220059_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_001093574.1|220058_221426_+	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000414222.1|221574_222147_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627550.1|222244_222589_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000669038.1|222629_223256_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000070654.1|223331_224327_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_001794016.1|224407_225058_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_016186903.1|225359_225815_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_000348372.1|225973_227452_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_000778539.1|227456_228458_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000718107.1|228454_228712_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672010.1|228777_229251_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000109909.1|230293_231886_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933819.1|232257_233451_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366165.1|233575_234484_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000453316.1|234695_235529_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000623481.1|235778_236132_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_001200542.1|236128_236494_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091444.1|236748_237051_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|237309_238023_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492901.1|238480_239101_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168914.1|239267_239903_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030476.1|240200_240644_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001152695.1|240630_241074_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671059.1|241186_241657_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_000384171.1|241855_242080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|242355_243210_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989104.1|243296_244589_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_000221190.1|244588_244903_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	1.3e-52
WP_001261683.1|245545_247048_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_001819953.1|247540_248572_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_000493891.1|248578_249211_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001159032.1|249221_250403_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008553.1|250415_250880_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	98.1	4.9e-69
WP_123089995.1|251001_252003_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	98.8	2.5e-182
WP_014937042.1|252114_252234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|252236_253064_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|253636_254038_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764425.1|254156_254720_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000526541.1|254716_255670_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_001025064.1|255779_256961_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001108722.1|257252_259667_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_000836472.1|259688_260000_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_160200089.1|260323_266893_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.7	1.7e-295
WP_000284992.1|267009_268278_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	5.9e-56
>prophage 15
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	279386	284714	2821898		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|279386_280244_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048371.1|280272_280869_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118301.1|280889_284714_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 16
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	293286	294993	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862084.1|293286_294993_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 17
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	301597	304228	2821898	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|301597_302860_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279341.1|302953_304228_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 18
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	307996	312132	2821898		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808837.1|307996_309601_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291426.1|309587_310748_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553919.1|310862_311309_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174275.1|311388_312132_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	8.3e-18
>prophage 19
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	329714	332912	2821898		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226930.1|329714_332912_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	5.5e-135
>prophage 20
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	337844	339602	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|337844_339602_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 21
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	344486	352651	2821898		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080025.1|344486_345188_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_073392727.1|345190_346852_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.0	1.7e-34
WP_000849445.1|347352_348840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038301.1|349132_351763_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.7	1.8e-46
WP_160200092.1|351778_352651_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.5	6.7e-43
>prophage 22
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	356565	367719	2821898	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_160200093.1|356565_357486_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.7	2.8e-31
WP_016186894.1|357578_357674_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|357898_359836_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049150.1|360262_361756_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791219.1|361984_362512_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	5.3e-11
WP_001125540.1|362540_362741_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|362787_363144_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032653.1|363285_363894_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	36.4	1.7e-21
WP_001280016.1|363912_364842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|364846_364957_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127572.1|365004_366306_+	trigger factor	NA	NA	NA	NA	NA
WP_000472293.1|366456_367719_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
>prophage 23
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	377285	379916	2821898	tRNA	Catovirus(100.0%)	1	NA	NA
WP_160200094.1|377285_379916_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	3.7e-153
>prophage 24
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	390031	425629	2821898	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005767.1|390031_391036_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|391037_392063_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|392085_393225_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|393243_393504_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749802.1|393778_396058_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595001.1|396260_398534_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000364542.1|398555_399074_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058583.1|399501_401691_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869979.1|401702_402155_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|402151_403027_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|403487_404750_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044796.1|404765_406532_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001791215.1|406864_406993_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682640.1|406992_407766_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102741.1|407926_409201_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	6.3e-106
WP_000704122.1|409285_409708_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|409807_409990_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000008061.1|410029_410176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123089984.1|410412_411426_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409167.1|411735_412878_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000066097.1|412878_413997_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567025.1|414678_415347_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283316.1|415348_417826_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734077.1|418168_420799_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|420861_421122_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|421125_421554_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|421568_421877_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_160200096.1|422161_422800_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	2.1e-09
WP_000137775.1|422802_423726_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|423737_425006_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|425005_425629_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 25
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	432304	433525	2821898		Lactococcus_phage(100.0%)	1	NA	NA
WP_000542304.1|432304_433525_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.1	1.1e-51
>prophage 26
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	442094	448258	2821898		Bacillus_phage(33.33%)	5	NA	NA
WP_000439692.1|442094_442556_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_160200167.1|442614_444762_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	9.1e-33
WP_001282570.1|444818_445793_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|445837_446089_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|446434_448258_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 27
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	451693	454801	2821898		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|451693_453526_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119020.1|453661_454801_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.5	6.8e-27
>prophage 28
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	461270	462218	2821898		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117769.1|461270_462218_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	4.9e-47
>prophage 29
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	465272	479000	2821898	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030080.1|465272_466664_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001794939.1|466998_467622_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|467632_468451_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217253.1|468511_470311_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|470534_471641_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624581.1|471771_472449_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683921.1|472451_473552_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_001062173.1|473665_475012_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000924211.1|475021_475912_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|476037_476823_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564316.1|476864_477728_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|477714_478125_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|478400_479000_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 30
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	485172	485796	2821898		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|485172_485796_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 31
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	491341	494153	2821898		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019697.1|491341_492688_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.9	2.1e-64
WP_000202178.1|492680_494153_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.1	1.4e-80
>prophage 32
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	501673	508243	2821898		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|501673_503011_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159866.1|503003_503234_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183386.1|503211_504093_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	5.8e-10
WP_001124985.1|504523_504976_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_123089971.1|504991_506671_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291540.1|506821_508243_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	6.6e-40
>prophage 33
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	515071	516478	2821898		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|515071_516478_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 34
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	523826	525311	2821898		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|523826_525311_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 35
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	530975	540473	2821898		Brevibacillus_phage(25.0%)	9	NA	NA
WP_000447733.1|530975_531863_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183424.1|531940_532447_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273366.1|532538_533270_+	segregation and condensation protein A	NA	NA	NA	NA	NA
WP_000368652.1|533262_533805_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|533797_534535_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|534667_535393_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987777.1|535373_537125_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001574168.1|537376_538309_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000723488.1|538295_540473_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	40.5	1.7e-31
>prophage 36
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	544872	547551	2821898		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|544872_545121_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163814.1|545228_546182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902107.1|546171_547551_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
>prophage 37
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	556958	562099	2821898		Bacillus_phage(25.0%)	6	NA	NA
WP_001043863.1|556958_557231_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|557661_558234_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774688.1|558236_558962_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001819897.1|558978_559923_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|560014_560464_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001269937.1|560932_562099_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
>prophage 38
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	565761	566337	2821898		Bacillus_virus(100.0%)	1	NA	NA
WP_000005208.1|565761_566337_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	4.6e-08
>prophage 39
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	569709	577216	2821898	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361536.1|569709_570912_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
WP_000049917.1|570898_571870_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525060.1|571893_574587_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858795.1|574908_576201_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000362222.1|576529_577216_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
>prophage 40
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	580907	581534	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|580907_581534_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 41
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	590997	591876	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|590997_591876_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 42
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	630467	640924	2821898	transposase	Staphylococcus_phage(50.0%)	14	NA	NA
WP_000282169.1|630467_631172_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.3	1.9e-11
WP_001814377.1|631416_631611_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|631622_631874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404628.1|631911_633036_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995290.1|633051_633489_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|633912_634869_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|635068_635548_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166055.1|635562_636402_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	5.1e-48
WP_000159899.1|636487_637021_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_123089962.1|637013_637442_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|637453_637954_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_123089961.1|637953_638175_+	YozE family protein	NA	NA	NA	NA	NA
WP_000121211.1|638247_639195_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000342154.1|639433_640924_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	1.7e-22
>prophage 43
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	644333	646345	2821898		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|644333_644993_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166793.1|644989_646345_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 44
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	652709	653501	2821898		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|652709_653501_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 45
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	657036	662062	2821898		Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|657036_658173_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_123090179.1|658204_658834_-	5-bromo-4-chloroindolyl phosphate hydrolase	NA	NA	NA	NA	NA
WP_001215907.1|658852_659122_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|659283_659592_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|659762_659963_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876206.1|660159_660561_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216956.1|660796_662062_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.0	4.0e-12
>prophage 46
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	669904	671506	2821898		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|669904_671506_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 47
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	675931	679385	2821898		Indivirus(50.0%)	3	NA	NA
WP_000079448.1|675931_676783_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	6.8e-16
WP_000974850.1|676789_677431_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_123090175.1|677570_679385_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	1.1e-153
>prophage 48
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	682799	683501	2821898		Tupanvirus(100.0%)	1	NA	NA
WP_000571253.1|682799_683501_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.0e-13
>prophage 49
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	690982	693337	2821898		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153717.1|690982_691765_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.7	1.2e-27
WP_000173851.1|691766_692765_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.1	3.2e-33
WP_000604802.1|692770_693337_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	1.7e-23
>prophage 50
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	697655	701221	2821898	transposase	Bacillus_phage(50.0%)	3	NA	NA
WP_000283026.1|697655_698918_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.6	2.6e-96
WP_001123276.1|699065_699251_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_000277709.1|699574_701221_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
>prophage 51
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	710490	714884	2821898		Bacillus_phage(50.0%)	2	NA	NA
WP_001289586.1|710490_712893_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.1e-92
WP_001574370.1|712892_714884_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 52
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	720501	722148	2821898		Vibrio_phage(100.0%)	1	NA	NA
WP_001088984.1|720501_722148_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.5	3.3e-22
>prophage 53
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	725817	726939	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_123090167.1|725817_726939_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.4	5.7e-10
>prophage 54
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	731088	736744	2821898		Phage_Wrath(25.0%)	7	NA	NA
WP_001208760.1|731088_731712_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
WP_000380738.1|732091_732955_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
WP_001791425.1|733028_733133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688127.1|733129_734107_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085657.1|734263_734533_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|734986_735136_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000089857.1|735226_736744_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.8	2.7e-92
>prophage 55
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	746874	751150	2821898		Bacillus_phage(50.0%)	6	NA	NA
WP_000841344.1|746874_747408_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|747546_747735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000624456.1|747847_748450_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670311.1|748446_749538_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_160200101.1|749541_750273_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001794121.1|750241_751150_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.8e-21
>prophage 56
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	755104	765011	2821898	capsid,transposase	Staphylococcus_phage(85.71%)	15	NA	NA
WP_078097338.1|755104_755440_-	hypothetical protein	NA	A0A1J0MFV1	Staphylococcus_phage	59.3	2.3e-28
WP_001217295.1|755517_755712_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001794747.1|755722_755896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000414196.1|756563_757148_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791415.1|757114_757243_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000905625.1|757307_757505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077670290.1|757506_758172_-|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	53.0	4.6e-60
WP_000585095.1|758232_758484_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477487.1|760004_760421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000121213.1|760847_761795_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
WP_000006110.1|762006_762192_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_031788482.1|762584_762695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002343.1|763396_763603_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001071312.1|763899_764112_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
WP_001659797.1|764813_765011_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
>prophage 57
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	770071	770548	2821898		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|770071_770548_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 58
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	776491	782973	2821898		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103747.1|776491_777310_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_001077635.1|777784_778327_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516249.1|778332_780342_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
WP_000073334.1|780354_782973_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
>prophage 59
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	792387	793431	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_031873573.1|792387_793431_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	1.6e-123
>prophage 60
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	797630	803174	2821898		Bacillus_virus(33.33%)	4	NA	NA
WP_000664777.1|797630_798917_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089941.1|798916_800182_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293307.1|800212_800926_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042907377.1|800930_803174_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 61
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	808314	820129	2821898	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|808314_809286_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282296.1|809300_810218_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|810387_810738_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_160200102.1|811124_813242_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	1.8e-25
WP_000020856.1|813246_813564_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|813560_813845_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097463.1|813865_815041_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|815061_815529_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_016186828.1|815818_820129_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 62
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	824402	825173	2821898		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|824402_825173_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 63
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	829947	843617	2821898	tRNA,protease	Erwinia_phage(16.67%)	10	NA	NA
WP_000379051.1|829947_831351_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	6.4e-27
WP_000072681.1|831416_831962_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015609.1|831958_832855_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	6.1e-31
WP_000195249.1|833272_834580_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|834735_836811_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000672864.1|838027_839272_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041658.1|839299_840418_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110252.1|840644_841553_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	2.3e-17
WP_001020801.1|841574_842741_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176401.1|842849_843617_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 64
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	857001	859122	2821898		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|857001_857733_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|857848_858082_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|858387_859122_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 65
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	869492	871487	2821898		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|869492_871487_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 66
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	874634	875570	2821898	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_123090114.1|874634_875570_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	26.8	5.6e-11
>prophage 67
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	880579	882836	2821898		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_123090115.1|880579_881779_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|881994_882213_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368225.1|882212_882836_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
>prophage 68
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	886150	886762	2821898		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|886150_886762_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 69
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	890729	895340	2821898		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|890729_891830_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|891831_893106_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|893123_894005_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|894032_895340_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 70
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	899216	903028	2821898	tRNA,transposase	Staphylococcus_prophage(50.0%)	2	NA	NA
WP_160200105.1|899216_900164_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	3.3e-184
WP_000384706.1|900274_903028_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	2.1e-90
>prophage 71
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	922405	922603	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245800.1|922405_922603_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	1.2e-19
>prophage 72
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	931514	937501	2821898	transposase	Staphylococcus_virus(50.0%)	7	NA	NA
WP_000277709.1|931514_933161_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
WP_001801391.1|933462_933690_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	67.7	1.9e-18
WP_000765703.1|933646_933793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857479.1|934460_935420_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.6	1.9e-35
WP_000231331.1|935873_936107_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032820.1|936716_936902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669541.1|937150_937501_-	complement inhibitor SCIN-C	NA	A7TWS0	Staphylococcus_phage	50.0	1.9e-20
>prophage 73
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	948936	953494	2821898		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|948936_949251_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249267.1|949423_951772_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	7.2e-15
WP_000161937.1|951781_953494_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
>prophage 74
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	958372	959431	2821898	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|958372_959431_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 75
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	971398	971881	2821898		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000401377.1|971398_971881_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 76
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	995949	999592	2821898		Mycoplasma_phage(50.0%)	4	NA	NA
WP_123090074.1|995949_997044_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	43.8	1.8e-37
WP_001020627.1|997056_997596_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000455584.1|997739_998015_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|998185_999592_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
>prophage 77
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1004233	1004785	2821898		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|1004233_1004785_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 78
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1010899	1015279	2821898		Bacillus_virus(50.0%)	5	NA	NA
WP_001289622.1|1010899_1011133_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	1.3e-09
WP_000040043.1|1011369_1013088_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|1013090_1013357_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505964.1|1013510_1014053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685076.1|1014106_1015279_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	3.1e-75
>prophage 79
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1018458	1033221	2821898		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_123090072.1|1018458_1019859_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273254.1|1019851_1020658_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101912.1|1020925_1022173_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709288.1|1022194_1023673_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.5	9.2e-77
WP_000238673.1|1023687_1024254_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000030814.1|1024256_1025285_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000483708.1|1025277_1026762_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	8.5e-46
WP_000032734.1|1026740_1028930_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000666808.1|1028922_1029594_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848351.1|1029595_1029859_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174050.1|1029858_1030563_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_001010391.1|1030566_1031691_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861570.1|1031677_1032160_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225845.1|1032360_1033221_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	1.2e-39
>prophage 80
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1043400	1047174	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074519.1|1043400_1047174_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	38.0	1.1e-54
>prophage 81
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1050841	1080865	2821898	bacteriocin,holin,protease	Staphylococcus_phage(16.67%)	33	NA	NA
WP_043856714.1|1050841_1051960_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.2e-15
WP_001088793.1|1052041_1053223_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|1053260_1053590_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1053825_1054647_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150205.1|1054639_1055443_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526678.1|1055429_1057103_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_001814117.1|1057089_1058301_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_072357920.1|1058404_1058482_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160200108.1|1058632_1059571_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620943.1|1059622_1060174_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001794164.1|1060263_1060554_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	2.6e-07
WP_001794249.1|1060617_1060749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081338.1|1060795_1061755_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1062245_1062602_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719183.1|1062691_1064173_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410718.1|1064178_1064466_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791476.1|1064806_1065097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571183.1|1065184_1065826_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.9e-19
WP_000873929.1|1065822_1066143_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870819.1|1066145_1068110_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001794574.1|1068153_1068426_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|1068435_1068537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099119695.1|1068706_1068784_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|1069084_1069687_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1069701_1069878_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|1070076_1071063_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876825.1|1071143_1071362_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_123090070.1|1071571_1072141_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414169.1|1072629_1074141_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|1074279_1075638_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001794169.1|1075654_1077979_-|protease	serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000928413.1|1078197_1079001_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049957.1|1079302_1080865_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
>prophage 82
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1102086	1103895	2821898		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082722.1|1102086_1103895_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
>prophage 83
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1107845	1121689	2821898	transposase	Staphylococcus_virus(16.67%)	9	NA	NA
WP_125899125.1|1107845_1109492_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.1	2.8e-292
WP_094409958.1|1109787_1111354_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001180271.1|1111443_1112325_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001067041.1|1113964_1114951_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000121211.1|1116584_1117532_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000517177.1|1117523_1117790_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000197096.1|1118001_1119657_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000786746.1|1119675_1120617_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	9.3e-06
WP_000140043.1|1120606_1121689_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.4e-18
>prophage 84
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1130283	1137093	2821898		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|1130283_1131429_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047061.1|1131538_1132408_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353950.1|1132466_1135076_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_160200110.1|1135278_1137093_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.6	4.4e-36
>prophage 85
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1140358	1147818	2821898	transposase	Staphylococcus_virus(50.0%)	4	NA	NA
WP_000277709.1|1140358_1142005_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.8	7.9e-295
WP_000902813.1|1142381_1142771_-	YisL family protein	NA	NA	NA	NA	NA
WP_000670755.1|1143096_1143999_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000154949.1|1144164_1147818_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.3	7.7e-24
>prophage 86
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1157973	1165023	2821898		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185311.1|1157973_1158903_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.5	1.8e-38
WP_000138487.1|1159297_1160542_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167322.1|1160650_1161841_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.0	1.3e-33
WP_000838046.1|1162148_1163276_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1163637_1164015_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|1164429_1165023_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 87
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1174958	1178586	2821898		Mycoplasma_phage(50.0%)	3	NA	NA
WP_160200111.1|1174958_1176434_-	leucyl aminopeptidase family protein	NA	Q6GYZ8	Mycoplasma_phage	34.9	3.4e-47
WP_000046076.1|1176564_1177773_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|1178226_1178586_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 88
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1182630	1185299	2821898		Pseudomonas_phage(50.0%)	2	NA	NA
WP_160200112.1|1182630_1183845_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129645.1|1183841_1185299_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
>prophage 89
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1198510	1202033	2821898		environmental_halophage(50.0%)	3	NA	NA
WP_000807671.1|1198510_1199752_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.1e-110
WP_000205572.1|1199866_1201174_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_064131228.1|1201271_1202033_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.8	1.5e-06
>prophage 90
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1205982	1207008	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571209.1|1205982_1207008_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	7.2e-28
>prophage 91
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1210116	1212425	2821898		Streptococcus_phage(66.67%)	4	NA	NA
WP_000589549.1|1210116_1210473_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147955.1|1210616_1210937_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1211086_1211626_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150022.1|1211708_1212425_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	5.2e-17
>prophage 92
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1218699	1219943	2821898		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1218699_1218900_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001574556.1|1219256_1219943_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
>prophage 93
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1229364	1238121	2821898		Staphylococcus_phage(50.0%)	8	NA	NA
WP_001574560.1|1229364_1230093_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	4.8e-18
WP_000999096.1|1230380_1230995_-	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_001085185.1|1231960_1232425_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_001050041.1|1232446_1234819_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	1.9e-92
WP_001165967.1|1234852_1235593_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|1235721_1235955_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785248.1|1236021_1236480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1236816_1238121_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 94
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1248809	1254625	2821898		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1248809_1249397_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1249965_1250910_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1251018_1252014_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369719.1|1252010_1252922_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1253689_1254625_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 95
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1259021	1261868	2821898		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662687.1|1259021_1261868_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 96
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1265186	1266026	2821898		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_123090124.1|1265186_1266026_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 97
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1272464	1278169	2821898		Streptococcus_phage(66.67%)	5	NA	NA
WP_000370984.1|1272464_1273547_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.8	1.2e-44
WP_000686342.1|1273910_1274777_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192947.1|1274920_1275562_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
WP_000258151.1|1275725_1276781_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1277098_1278169_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 98
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1287446	1310416	2821898		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000616865.1|1287446_1288208_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245566.1|1288204_1289161_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000876311.1|1289147_1290119_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|1290495_1291467_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1291586_1293692_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1293654_1294053_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068491.1|1294854_1295721_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|1295740_1296241_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|1296579_1298085_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031788440.1|1298162_1298264_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429002.1|1298354_1299272_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_000197262.1|1299823_1300366_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663016.1|1300524_1301583_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000180987.1|1301822_1303337_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589241.1|1303329_1304307_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.1e-25
WP_000983677.1|1304527_1306309_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525101.1|1306320_1308204_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	8.8e-56
WP_000098285.1|1308475_1310416_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 99
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1313555	1323401	2821898		Pandoravirus(12.5%)	12	NA	NA
WP_001217804.1|1313555_1314707_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604508.1|1314690_1315284_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_000446724.1|1315634_1316303_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1316304_1316724_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062968.1|1316727_1317441_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637686.1|1317539_1318124_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093552.1|1318403_1318844_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1319185_1319659_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1319633_1320320_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244416.1|1320319_1321375_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702776.1|1321446_1322430_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000931237.1|1322561_1323401_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	5.1e-56
>prophage 100
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1335006	1336380	2821898		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952030.1|1335006_1336380_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	34.1	1.2e-46
>prophage 101
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1341358	1347638	2821898		Bacillus_phage(33.33%)	6	NA	NA
WP_123090116.1|1341358_1343032_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.9	7.6e-11
WP_000737163.1|1343028_1344660_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	2.3e-12
WP_000469883.1|1344878_1345754_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358501.1|1345925_1346609_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148821.1|1346611_1347070_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820892.1|1347071_1347638_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
>prophage 102
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1350661	1352308	2821898	transposase	Staphylococcus_virus(100.0%)	1	NA	NA
WP_000277741.1|1350661_1352308_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 103
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1356504	1356978	2821898		Pandoravirus(100.0%)	1	NA	NA
WP_000833480.1|1356504_1356978_-	cupin	NA	A0A291AU44	Pandoravirus	38.7	4.6e-14
>prophage 104
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1362225	1363023	2821898		Lactobacillus_virus(100.0%)	1	NA	NA
WP_000731642.1|1362225_1363023_+	LysM peptidoglycan-binding domain-containing protein	NA	C1KFN7	Lactobacillus_virus	35.8	2.1e-06
>prophage 105
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1367744	1368506	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|1367744_1368506_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 106
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1372871	1373915	2821898		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030763.1|1372871_1373915_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.1	3.8e-16
>prophage 107
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1380437	1381235	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1380437_1381235_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 108
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1384462	1388421	2821898		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1384462_1386190_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_123090086.1|1386610_1387906_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1388022_1388421_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 109
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1395354	1396098	2821898		Indivirus(100.0%)	1	NA	NA
WP_000894458.1|1395354_1396098_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-12
>prophage 110
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1408974	1409535	2821898	integrase	Streptococcus_phage(100.0%)	1	1403128:1403142	1413118:1413132
1403128:1403142	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044966.1|1408974_1409535_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|1408974_1409535_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
1413118:1413132	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 111
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1422694	1426048	2821898		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1422694_1423705_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001788287.1|1424203_1424725_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180233.1|1424752_1426048_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 112
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1433579	1434902	2821898		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860607.1|1433579_1434902_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	8.2e-109
>prophage 113
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1446207	1446864	2821898		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|1446207_1446864_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 114
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1450532	1453854	2821898		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000382588.1|1450532_1451909_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	23.9	6.7e-21
WP_000347063.1|1452453_1453854_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	33.0	9.4e-55
>prophage 115
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1477207	1477870	2821898		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1477207_1477870_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 116
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1484458	1485646	2821898		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250820.1|1484458_1485646_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	1.5e-45
>prophage 117
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1488673	1499627	2821898		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1488673_1490755_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1490877_1491348_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1491413_1491827_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1491924_1492179_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001819727.1|1492315_1495912_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	4.3e-67
WP_000918664.1|1496075_1499627_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.2	6.1e-50
>prophage 118
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1503310	1508093	2821898	tRNA	Bacillus_virus(50.0%)	7	NA	NA
WP_001288302.1|1503310_1503859_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1503871_1504054_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001791441.1|1504109_1504253_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000664740.1|1505017_1505542_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1505541_1506288_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370181.1|1506295_1506700_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631982.1|1506692_1508093_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	2.5e-55
>prophage 119
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1514104	1516561	2821898	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1514104_1516561_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 120
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1535365	1545823	2821898	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1535365_1536853_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_016186812.1|1536905_1536998_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613720.1|1537391_1537868_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154303.1|1537864_1538230_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167936.1|1538207_1539011_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	6.7e-21
WP_103153050.1|1539226_1540159_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.3	1.4e-107
WP_000148605.1|1540337_1541219_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1541632_1543726_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1543983_1544523_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176721.1|1544527_1545823_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.3	8.2e-13
>prophage 121
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1555079	1557544	2821898		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1555079_1556045_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252534.1|1556191_1557544_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 122
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1563429	1566527	2821898	tRNA	Hokovirus(50.0%)	2	NA	NA
WP_160200120.1|1563429_1565403_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	7.2e-93
WP_000279925.1|1565687_1566527_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 123
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1570433	1571051	2821898		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1570433_1571051_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 124
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1579895	1581593	2821898		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109044.1|1579895_1581593_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 125
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1598230	1604467	2821898		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170274.1|1598230_1599235_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
WP_123090146.1|1599568_1600411_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467992.1|1600447_1601107_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569267.1|1601110_1602136_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	1.4e-31
WP_001036658.1|1602426_1603569_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_000634110.1|1603561_1604467_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	7.2e-48
>prophage 126
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1628003	1630785	2821898		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072632.1|1628003_1629236_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.9	2.7e-45
WP_000028598.1|1629228_1630785_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	1.7e-286
>prophage 127
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1639556	1639883	2821898	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001799349.1|1639556_1639883_+|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	85.4	4.3e-11
>prophage 128
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1643191	1646224	2821898		Hokovirus(50.0%)	2	NA	NA
WP_000424963.1|1643191_1644733_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1644757_1646224_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 129
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1655324	1656848	2821898		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930503.1|1655324_1656848_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.2	5.5e-40
>prophage 130
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1665798	1666319	2821898		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000382163.1|1665798_1665999_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1665985_1666096_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1666166_1666319_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
>prophage 131
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1669661	1688078	2821898	integrase,terminase,coat	Staphylococcus_phage(85.0%)	28	1665277:1665294	1681451:1681468
1665277:1665294	attL	ATATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_115276898.1|1669661_1670231_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	96.8	2.3e-100
WP_045181470.1|1670227_1670440_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	98.6	1.1e-31
WP_160200125.1|1670571_1671099_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	96.0	3.2e-88
WP_000448775.1|1671149_1671368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052995614.1|1671385_1671964_-	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.9	3.7e-29
WP_001190616.1|1671975_1672317_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	98.2	1.6e-56
WP_123090293.1|1672854_1673496_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.0	1.4e-109
WP_001804819.1|1673497_1673761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001039165.1|1673762_1674125_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	4.6e-62
WP_053040304.1|1674403_1675873_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.7	1.7e-280
WP_053040303.1|1675889_1676759_-	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	93.4	5.3e-157
WP_123090134.1|1676822_1677143_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	2.2e-20
WP_001058492.1|1677145_1677355_-	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	95.7	7.7e-30
WP_000784885.1|1677347_1677494_-	hypothetical protein	NA	NA	NA	NA	NA
WP_053040301.1|1677505_1677778_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	96.7	1.4e-44
WP_053040300.1|1677778_1677991_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	97.1	4.4e-33
WP_000142630.1|1678140_1678875_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	98.4	8.5e-132
WP_123090135.1|1679173_1680388_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	96.5	1.5e-221
WP_000400841.1|1680502_1681222_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000897044.1|1681453_1681696_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
1681451:1681468	attR	ATATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000934799.1|1681747_1682251_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1682271_1682568_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1682811_1683003_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218732.1|1683088_1684186_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1684197_1684401_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373076.1|1684430_1685312_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001573568.1|1685465_1686311_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655687.1|1686974_1688078_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 132
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1697999	1698842	2821898		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209478.1|1697999_1698842_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.2	4.5e-12
>prophage 133
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1720197	1722932	2821898		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_160200126.1|1720197_1721220_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	6.7e-10
WP_001191936.1|1721197_1722142_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449073.1|1722131_1722932_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	44.4	1.5e-41
>prophage 134
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1741170	1741848	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_123090138.1|1741170_1741848_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	1.2e-31
>prophage 135
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1758281	1762730	2821898		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549309.1|1758281_1762730_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.7	1.7e-28
>prophage 136
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1767858	1769505	2821898	transposase	Staphylococcus_virus(100.0%)	1	NA	NA
WP_160200128.1|1767858_1769505_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.3	7.4e-293
>prophage 137
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1775250	1776912	2821898		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000570080.1|1775250_1775910_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	5.8e-23
WP_000736790.1|1775961_1776912_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 138
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1785719	1787156	2821898		Pandoravirus(100.0%)	1	NA	NA
WP_000163995.1|1785719_1787156_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.0	1.3e-30
>prophage 139
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1793664	1798208	2821898		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925396.1|1793664_1795404_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.0e-62
WP_000608835.1|1795669_1796344_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975347.1|1796483_1798208_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 140
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1808077	1809121	2821898		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645611.1|1808077_1809121_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	6.0e-14
>prophage 141
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1816337	1817867	2821898		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|1816337_1817867_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 142
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1827552	1829058	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008395.1|1827552_1829058_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 143
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1840181	1845540	2821898		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1840181_1842431_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837114.1|1843018_1843987_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127979.1|1843983_1845540_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 144
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1855851	1857910	2821898		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818914.1|1855851_1856949_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_160200132.1|1857331_1857910_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	43.0	1.6e-13
>prophage 145
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1865721	1867314	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_000067363.1|1865721_1867314_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	5.4e-22
>prophage 146
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1883406	1884591	2821898		Klosneuvirus(100.0%)	1	NA	NA
WP_001084444.1|1883406_1884591_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.6	2.4e-35
>prophage 147
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1889449	1899733	2821898		Tupanvirus(50.0%)	3	NA	NA
WP_000605274.1|1889449_1896625_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.7	5.0e-67
WP_123090101.1|1897071_1898322_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706134.1|1898707_1899733_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
>prophage 148
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1903287	1906268	2821898		Bacillus_virus(50.0%)	4	NA	NA
WP_123090100.1|1903287_1904010_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.6	6.4e-39
WP_000171926.1|1904351_1904864_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356967.1|1905043_1905247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013474.1|1905308_1906268_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	2.0e-11
>prophage 149
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1909609	1912094	2821898		Catovirus(50.0%)	2	NA	NA
WP_000723445.1|1909609_1910755_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	3.2e-24
WP_000779509.1|1910831_1912094_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	2.5e-22
>prophage 150
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1919111	1925676	2821898		Catovirus(50.0%)	6	NA	NA
WP_000413167.1|1919111_1920236_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	3.9e-128
WP_123090097.1|1920239_1921349_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1921361_1922390_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940769.1|1922379_1924203_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.4	3.0e-29
WP_000565300.1|1924222_1924987_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037317.1|1924989_1925676_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
>prophage 151
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1929699	1930875	2821898		Clostridium_phage(100.0%)	1	NA	NA
WP_000469818.1|1929699_1930875_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.9	5.2e-30
>prophage 152
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1936333	1937107	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078278.1|1936333_1937107_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	6.4e-13
>prophage 153
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1944993	1945593	2821898		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1944993_1945593_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 154
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1950527	1955622	2821898		Catovirus(50.0%)	5	NA	NA
WP_001793810.1|1950527_1951508_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.3	1.3e-47
WP_123090093.1|1951842_1952619_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414632.1|1952829_1953456_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1953651_1954416_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223717.1|1954419_1955622_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.3	5.1e-09
>prophage 155
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1963888	1968098	2821898		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1963888_1964869_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045124.1|1965099_1966092_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000925002.1|1966107_1967103_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136645.1|1967099_1968098_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.2	2.6e-14
>prophage 156
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	1983977	2032855	2821898	bacteriocin,tRNA,transposase	Staphylococcus_phage(28.57%)	46	NA	NA
WP_000121211.1|1983977_1984925_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000710549.1|1985438_1986425_-	phosphatidylinositol-specific phospholipase C	NA	NA	NA	NA	NA
WP_000714376.1|1986629_1987112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000080571.1|1987194_1990347_-	ATPase	NA	NA	NA	NA	NA
WP_000908950.1|1990614_1991217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000179900.1|1991424_1991721_-	TfoX/Sxy family protein	NA	NA	NA	NA	NA
WP_073392882.1|1992334_1993267_+|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_123090089.1|1993373_1993847_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000414485.1|1994316_1994892_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001016371.1|1995166_1995532_-	acetyltransferase	NA	NA	NA	NA	NA
WP_000786141.1|1995541_1995745_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_001246797.1|1995858_1997250_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA	NA
WP_000926750.1|1997269_1997641_+	membrane protein	NA	NA	NA	NA	NA
WP_000140910.1|1997693_1998665_+	amidohydrolase	NA	NA	NA	NA	NA
WP_000608221.1|2000092_2001133_-	5-methylcytosine-specific restriction endonuclease system specificity protein McrC	NA	NA	NA	NA	NA
WP_000649665.1|2001125_2002826_-	AAA domain-containing protein	NA	K4I1H4	Acidithiobacillus_phage	26.8	4.1e-20
WP_001794509.1|2003115_2003490_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160200136.1|2003675_2004623_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	3.3e-184
WP_000843733.1|2005122_2005866_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001002795.1|2006415_2006511_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000761344.1|2006725_2007067_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_031876199.1|2007153_2007924_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_000273007.1|2008232_2008733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001582045.1|2008800_2009127_-	recombinase	NA	NA	NA	NA	NA
WP_001643491.1|2009066_2009444_-	recombinase	NA	NA	NA	NA	NA
WP_000593106.1|2009681_2010308_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000831610.1|2010319_2010631_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000726502.1|2012642_2012936_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000358995.1|2013315_2013711_-	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000153630.1|2013728_2015018_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	6.6e-188
WP_000120605.1|2015017_2015332_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_001035802.1|2016047_2016260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|2016294_2016969_-|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_000361064.1|2017063_2017441_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000159128.1|2017678_2018044_+	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000378396.1|2018036_2020217_+	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_160200137.1|2020579_2022226_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.2	1.7e-289
WP_160200138.1|2022292_2023726_-	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000069452.1|2023740_2025786_-	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000690626.1|2026052_2026628_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000838599.1|2026962_2027958_-	YeiH family protein	NA	NA	NA	NA	NA
WP_000377738.1|2028082_2028904_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001791613.1|2029205_2029298_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000397995.1|2029526_2029850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000998976.1|2031065_2031491_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000121211.1|2031907_2032855_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
>prophage 157
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2037831	2047828	2821898		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2037831_2038632_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104171.1|2039019_2039808_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060146.1|2039808_2041143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871610.1|2041135_2042962_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	2.1e-30
WP_000101976.1|2042974_2043676_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|2044865_2046149_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|2046427_2047828_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 158
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2054510	2063546	2821898	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884337.1|2054510_2055797_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177483.1|2056174_2057689_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	4.4e-90
WP_000449218.1|2058014_2058827_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819098.1|2058914_2061575_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.8	4.6e-119
WP_000255583.1|2061611_2063546_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	4.4e-143
>prophage 159
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2073633	2076933	2821898		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742840.1|2073633_2074473_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.4	1.4e-05
WP_000491382.1|2074967_2075321_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_123090001.1|2075388_2075784_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054111.1|2076036_2076606_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	34.8	2.8e-05
WP_001059079.1|2076732_2076933_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 160
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2082726	2083485	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2082726_2083485_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 161
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2100628	2102341	2821898		Planktothrix_phage(100.0%)	1	NA	NA
WP_123090002.1|2100628_2102341_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	9.2e-20
>prophage 162
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2107969	2108983	2821898		Faustovirus(100.0%)	1	NA	NA
WP_000639198.1|2107969_2108983_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.2	8.2e-08
>prophage 163
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2121372	2122065	2821898		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185861.1|2121372_2122065_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 164
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2148604	2150464	2821898		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125631.1|2148604_2150464_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 165
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2176266	2178017	2821898		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143418.1|2176266_2177154_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	7.4e-05
WP_000923764.1|2177261_2178017_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.8e-31
>prophage 166
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2181454	2181952	2821898		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|2181454_2181952_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 167
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2187002	2189386	2821898		Enterococcus_phage(100.0%)	2	NA	NA
WP_160200144.1|2187002_2188853_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.8	1.8e-234
WP_000173336.1|2188849_2189386_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	47.5	1.1e-40
>prophage 168
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2194262	2204373	2821898	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|2194262_2195972_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2196249_2196462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028789.1|2196741_2197185_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172340.1|2197378_2198977_+	acetyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_001793854.1|2199036_2199237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2199663_2201160_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031407.1|2201352_2202243_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237625.1|2202365_2202782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160200145.1|2203035_2204373_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	6.7e-18
>prophage 169
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2232528	2235727	2821898		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000751265.1|2232528_2233230_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.8	2.1e-39
WP_000379825.1|2233915_2235727_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 170
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2244166	2248414	2821898		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161364.1|2244166_2245165_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
WP_000076662.1|2245254_2245461_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024137.1|2246005_2248414_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	2.9e-128
>prophage 171
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2257574	2260564	2821898	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_160200148.1|2257574_2259680_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.5	1.2e-117
WP_000262597.1|2260042_2260564_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
>prophage 172
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2266987	2273370	2821898		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062662.1|2266987_2268727_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473682.1|2269026_2271093_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206033.1|2271472_2271883_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|2271924_2272281_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228158.1|2272401_2273370_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	3.1e-12
>prophage 173
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2282194	2283187	2821898		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161541.1|2282194_2283187_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	9.7e-38
>prophage 174
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2292592	2293288	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382892.1|2292592_2293288_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	2.0e-37
>prophage 175
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2315572	2322748	2821898		Bacillus_phage(66.67%)	6	NA	NA
WP_000721337.1|2315572_2316439_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
WP_001573690.1|2316565_2316874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000678764.1|2317017_2317284_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001793882.1|2317567_2319376_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.5	1.0e-93
WP_000755954.1|2319492_2319885_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_160200149.1|2319886_2322748_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.6	5.8e-27
>prophage 176
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2327192	2327888	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_000217452.1|2327192_2327888_+	oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	5.1e-09
>prophage 177
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2331312	2332131	2821898		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824929.1|2331312_2332131_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	1.9e-10
>prophage 178
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2340069	2341627	2821898		Planktothrix_phage(50.0%)	2	NA	NA
WP_123090021.1|2340069_2340885_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	6.1e-14
WP_000590515.1|2340877_2341627_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
>prophage 179
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2348852	2349515	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_000923514.1|2348852_2349515_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	34.5	2.2e-17
>prophage 180
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2352631	2356568	2821898		Salmonella_phage(50.0%)	4	NA	NA
WP_000733283.1|2352631_2353477_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
WP_001096374.1|2353583_2355341_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284656.1|2355330_2355711_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690628.1|2355974_2356568_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
>prophage 181
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2363224	2364451	2821898		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948990.1|2363224_2364451_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 182
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2382828	2389035	2821898		Bacillus_phage(66.67%)	5	NA	NA
WP_001176855.1|2382828_2383971_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	2.6e-55
WP_000779351.1|2384238_2384625_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482647.1|2384758_2384866_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064829.1|2385513_2387277_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	1.6e-35
WP_000486505.1|2387301_2389035_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	1.5e-30
>prophage 183
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2392496	2398250	2821898		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971554.1|2392496_2393612_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.9	7.1e-21
WP_000286868.1|2393622_2394315_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200947.1|2394325_2394793_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_001056917.1|2394844_2395822_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	2.4e-142
WP_000916697.1|2395823_2396771_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	2.1e-138
WP_000594516.1|2397320_2398250_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
>prophage 184
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2406142	2406874	2821898		Bacillus_virus(100.0%)	1	NA	NA
WP_000615467.1|2406142_2406874_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	1.3e-23
>prophage 185
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2422950	2424510	2821898		Escherichia_phage(100.0%)	1	NA	NA
WP_000692652.1|2422950_2424510_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 186
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2445911	2446946	2821898		Bacillus_virus(100.0%)	1	NA	NA
WP_000655979.1|2445911_2446946_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.2	1.7e-16
>prophage 187
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2457409	2463966	2821898		Staphylococcus_phage(25.0%)	8	NA	NA
WP_000388431.1|2457409_2458138_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	6.7e-28
WP_000372857.1|2458271_2458835_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000793166.1|2459011_2459467_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000977031.1|2459463_2459907_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000477323.1|2460069_2461443_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	1.1e-12
WP_000249492.1|2461435_2462110_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	44.7	8.0e-52
WP_000761409.1|2462245_2463301_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229922.1|2463300_2463966_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.3	7.2e-37
>prophage 188
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2467703	2468912	2821898		Salmonella_phage(100.0%)	1	NA	NA
WP_000999130.1|2467703_2468912_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.5	3.0e-33
>prophage 189
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2481567	2482467	2821898		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524841.1|2481567_2482467_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	2.7e-15
>prophage 190
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2489824	2490244	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_160200154.1|2489824_2490244_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	64.7	1.0e-36
>prophage 191
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2495815	2496697	2821898		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730056.1|2495815_2496697_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	1.7e-62
>prophage 192
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2504582	2505218	2821898		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285452.1|2504582_2505218_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.6	7.1e-10
>prophage 193
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2518222	2522498	2821898		Staphylococcus_phage(50.0%)	4	NA	NA
WP_160200171.1|2518222_2518861_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	47.4	4.5e-36
WP_000684154.1|2519469_2520594_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	1.6e-12
WP_000417008.1|2520685_2521639_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_160200156.1|2521997_2522498_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 194
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2526418	2527228	2821898		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717395.1|2526418_2527228_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 195
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2546202	2546808	2821898		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2546202_2546808_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 196
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2558834	2562002	2821898		Leptospira_phage(100.0%)	1	NA	NA
WP_000592291.1|2558834_2562002_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.0	7.3e-63
>prophage 197
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2585463	2587130	2821898		Planktothrix_phage(50.0%)	2	NA	NA
WP_000389651.1|2585463_2586273_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.8	1.4e-18
WP_123090044.1|2586269_2587130_+	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	28.7	6.7e-11
>prophage 198
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2590171	2598734	2821898		Mycobacterium_phage(33.33%)	8	NA	NA
WP_000204276.1|2590171_2591608_+	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.0	4.6e-57
WP_000136272.1|2591856_2592036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791584.1|2592685_2592868_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130145.1|2593337_2595002_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	4.7e-45
WP_000179061.1|2595038_2595743_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769709.1|2596133_2596559_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044369.1|2596853_2597669_+	hydrolase	NA	NA	NA	NA	NA
WP_001044451.1|2597879_2598734_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	34.8	1.3e-06
>prophage 199
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2602112	2605175	2821898		Staphylococcus_phage(50.0%)	5	NA	NA
WP_001015495.1|2602112_2602961_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
WP_001573519.1|2603181_2603307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001293423.1|2603261_2603555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333457.1|2603568_2604177_+	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001573518.1|2604434_2605175_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	7.3e-14
>prophage 200
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2611495	2612908	2821898		Pandoravirus(100.0%)	1	NA	NA
WP_000169223.1|2611495_2612908_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	5.0e-48
>prophage 201
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2616876	2618439	2821898		Vibrio_phage(100.0%)	1	NA	NA
WP_000792332.1|2616876_2618439_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	3.5e-18
>prophage 202
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2628642	2629611	2821898		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2628642_2629611_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 203
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2645411	2646320	2821898		Klosneuvirus(100.0%)	1	NA	NA
WP_160200159.1|2645411_2646320_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.7	1.2e-26
>prophage 204
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2663568	2666388	2821898		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334466.1|2663568_2665374_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.6e-97
WP_000908186.1|2665605_2666388_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	5.7e-09
>prophage 205
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2677574	2681407	2821898		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2677574_2678018_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_160200161.1|2678129_2678849_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083335.1|2679163_2679826_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242307.1|2680105_2681407_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	4.7e-133
>prophage 206
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2689326	2690937	2821898		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2689326_2690937_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 207
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2698740	2706493	2821898		Bacillus_virus(25.0%)	9	NA	NA
WP_000273356.1|2698740_2699340_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460244.1|2699340_2700417_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_123090128.1|2700403_2701240_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_001801520.1|2701272_2702370_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
WP_000697334.1|2702366_2702786_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654191.1|2702892_2703417_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2703443_2704682_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2704709_2705339_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723407.1|2705362_2706493_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.0e-27
>prophage 208
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2717209	2717605	2821898		Bacillus_phage(100.0%)	1	NA	NA
WP_000932696.1|2717209_2717605_+	single-stranded DNA-binding protein	NA	A0A1B1PAE7	Bacillus_phage	36.8	3.0e-14
>prophage 209
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2723714	2724362	2821898		Moumouvirus(100.0%)	1	NA	NA
WP_001187612.1|2723714_2724362_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	4.7e-09
>prophage 210
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2732554	2734075	2821898		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178940.1|2732554_2734075_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 211
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2739749	2741777	2821898		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546609.1|2739749_2741777_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	3.9e-25
>prophage 212
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2746927	2750311	2821898		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621176.1|2746927_2747290_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2747638_2748640_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2748758_2749085_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190825.1|2749086_2749566_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041107.1|2749540_2750311_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 213
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2764424	2769148	2821898		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094575.1|2764424_2765954_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2765983_2767003_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2767124_2767379_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047828.1|2767378_2769148_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	4.1e-63
>prophage 214
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2772903	2786981	2821898	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159047.1|2772903_2773929_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000106312.1|2774242_2775853_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	5.1e-20
WP_160200165.1|2775950_2776079_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602046.1|2776223_2778152_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.2e-53
WP_001283612.1|2778404_2779040_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_160200172.1|2779396_2780425_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581078.1|2780484_2780709_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052261.1|2780917_2782168_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	9.0e-41
WP_123090051.1|2782351_2783302_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001791588.1|2783450_2784935_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	5.2e-19
WP_001253292.1|2784931_2785891_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2786264_2786981_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 215
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2794167	2797489	2821898		uncultured_virus(66.67%)	4	NA	NA
WP_000917289.1|2794167_2794452_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240651.1|2794527_2796144_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
WP_000201397.1|2796685_2796865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001573771.1|2797147_2797489_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	46.0	4.1e-20
>prophage 216
NZ_CP047799	Staphylococcus aureus strain UP_322 chromosome, complete genome	2821898	2801467	2821427	2821898	integrase	Staphylococcus_phage(88.57%)	36	2796272:2796286	2808233:2808247
2796272:2796286	attL	AGGCGTCTTTATTAT	NA	NA	NA	NA
WP_000791398.1|2801467_2802523_+	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
WP_000595617.1|2802544_2803564_+	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
WP_000857198.1|2804701_2805739_-|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	100.0	2.6e-179
WP_000391618.1|2805911_2806451_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	33.1	9.0e-14
WP_000705238.1|2806590_2806758_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000109189.1|2806828_2807014_-	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_001557601.1|2807230_2808085_-	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_001083975.1|2808096_2808813_-	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
2808233:2808247	attR	ATAATAAAGACGCCT	NA	NA	NA	NA
WP_000639923.1|2808976_2809219_+	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001662741.1|2809231_2809675_+	hypothetical protein	NA	Q6R853	Staphylococcus_virus	100.0	2.0e-75
WP_000939495.1|2809689_2809830_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|2809822_2810032_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_001148337.1|2810088_2810838_+	antirepressor	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_000435343.1|2810850_2811111_+	hypothetical protein	NA	A0A2I6PDT7	Staphylococcus_phage	100.0	3.5e-40
WP_001120936.1|2811343_2811664_+	DUF771 domain-containing protein	NA	A0A1W6JPI1	Staphylococcus_phage	100.0	7.4e-56
WP_000066011.1|2811660_2811822_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291488.1|2811914_2812175_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_001205732.1|2812183_2812447_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_078170837.1|2812455_2814399_+	AAA family ATPase	NA	A0A1W6JPG7	Staphylococcus_phage	96.8	0.0e+00
WP_000138475.1|2814400_2815321_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_072460574.1|2815401_2816019_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	100.0	1.2e-86
WP_000934770.1|2816019_2816490_+	single-stranded DNA-binding protein	NA	A0A0E3T9H6	Staphylococcus_phage	99.4	4.8e-80
WP_061741412.1|2816519_2817404_+	DnaD domain protein	NA	S4V6D4	Staphylococcus_phage	96.6	1.2e-137
WP_000338528.1|2817410_2817629_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401964.1|2817637_2818042_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101270.1|2818054_2818423_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000131381.1|2818426_2818669_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_015974517.1|2818683_2818932_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	100.0	5.4e-38
WP_000185680.1|2818924_2819461_+	hypothetical protein	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_000028780.1|2819497_2819740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195782.1|2819736_2819925_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001125015.1|2819899_2820100_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000501856.1|2820087_2820252_+	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	100.0	3.9e-21
WP_001557462.1|2820251_2820452_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2820479_2820896_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988330.1|2821127_2821427_+	HNH endonuclease	NA	G4KNP8	Staphylococcus_phage	100.0	4.6e-52
