assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	1	413073-413157	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	413099-413131|413099-413131|413099-413131	NZ_CP047800.1_681600-681568|NZ_CP047800.1_1930040-1930008|NZ_CP047800.1_1245540-1245572	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047800.1_403702_404272_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047800.1_404261_404846_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047800.1_404846_405200_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047800.1_405202_405919_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047800.1_405958_406645_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047800.1_406736_407198_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047800.1_407256_409404_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047800.1_409460_410435_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047800.1_410479_410731_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047800.1_411076_412900_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047800.1_413465_414590_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047800.1_414689_415667_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047800.1_415698_416325_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047800.1_416393_418226_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047800.1_418361_419501_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047800.1_419504_420443_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047800.1_420444_421197_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047800.1_421203_422550_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047800.1_422842_423019_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047800.1_423262_423946_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2	1202164-1202245	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1202188-1202221	NZ_CP047800.1_681601-681568	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047800.1_1203228_1203342_-	NA|414aa|up_9|NZ_CP047800.1_1192647_1193889_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047800.1_1194003_1195311_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047800.1_1195408_1196170_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047800.1_1196497_1197349_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047800.1_1197582_1197777_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047800.1_1198130_1198952_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047800.1_1198969_1199665_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047800.1_1199657_1200683_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047800.1_1200932_1201229_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047800.1_1201221_1201608_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047800.1_1202348_1203227_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047800.1_1203228_1203342_-	NA	NA|127aa|down_2|NZ_CP047800.1_1203405_1203786_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047800.1_1203943_1204300_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047800.1_1204443_1204764_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047800.1_1204914_1205454_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047800.1_1205536_1206253_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047800.1_1206400_1206823_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047800.1_1207221_1207716_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047800.1_1207870_1208488_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	3	1251052-1251130	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	2	1251076-1251106|1251076-1251106	NZ_CP047800.1_1806869-1806839|NZ_CP047800.1_1806924-1806894	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047800.1_1258608_1258716_-,NA|35aa|down_7|NZ_CP047800.1_1260148_1260253_-	NA|301aa|up_9|NZ_CP047800.1_1239933_1240836_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047800.1_1241078_1241666_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047800.1_1242229_1243174_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047800.1_1243284_1244280_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047800.1_1244276_1245188_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047800.1_1246073_1247009_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047800.1_1247075_1248515_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047800.1_1248522_1249008_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047800.1_1249015_1249855_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047800.1_1249860_1250793_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047800.1_1251456_1254303_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047800.1_1254310_1256296_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047800.1_1256564_1256801_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047800.1_1256797_1257448_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047800.1_1257621_1258461_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047800.1_1258608_1258716_-	NA	NA|370aa|down_6|NZ_CP047800.1_1258869_1259980_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047800.1_1260148_1260253_-	NA	NA|844aa|down_8|NZ_CP047800.1_1260294_1262826_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047800.1_1263239_1263812_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	4	1646145-1646247	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047800.1_1637763_1638300_+,NA|221aa|up_1|NZ_CP047800.1_1644391_1645054_+,NA|33aa|down_0|NZ_CP047800.1_1646922_1647021_-,NA|128aa|down_6|NZ_CP047800.1_1653268_1653652_+,NA|70aa|down_8|NZ_CP047800.1_1654476_1654686_+	NA|91aa|up_9|NZ_CP047800.1_1635996_1636269_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047800.1_1636667_1637372_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047800.1_1637763_1638300_+	NA	NA|514aa|up_6|NZ_CP047800.1_1638412_1639954_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047800.1_1639978_1641445_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047800.1_1641482_1642751_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047800.1_1642750_1643329_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047800.1_1643841_1644249_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047800.1_1644391_1645054_+	NA	NA|319aa|up_0|NZ_CP047800.1_1645171_1646128_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP047800.1_1646922_1647021_-	NA	NA|463aa|down_1|NZ_CP047800.1_1647105_1648494_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047800.1_1648573_1649329_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047800.1_1649820_1650390_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047800.1_1650405_1651929_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047800.1_1652372_1652999_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047800.1_1653268_1653652_+	NA	NA|194aa|down_7|NZ_CP047800.1_1653717_1654299_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047800.1_1654476_1654686_+	NA	NA|84aa|down_9|NZ_CP047800.1_1654724_1654976_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	5	2304852-2304985	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2304869-2304914|2304932-2304968	NZ_CP047800.1_2301219-2301264|NZ_CP047800.1_2301282-2301318	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047800.1_2298395_2298596_+,NA|78aa|down_5|NZ_CP047800.1_2312918_2313152_+,NA|103aa|down_6|NZ_CP047800.1_2313259_2313568_-,NA|89aa|down_7|NZ_CP047800.1_2313711_2313978_-	NA|426aa|up_9|NZ_CP047800.1_2288392_2289670_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047800.1_2290146_2291970_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047800.1_2292108_2292525_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047800.1_2292755_2293448_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047800.1_2293612_2294377_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047800.1_2294529_2295210_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047800.1_2295233_2296787_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047800.1_2296903_2298262_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047800.1_2298395_2298596_+	NA	NA|1039aa|up_0|NZ_CP047800.1_2298730_2301847_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047800.1_2305593_2306460_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047800.1_2306670_2307414_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047800.1_2307737_2308094_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|988aa|down_3|NZ_CP047800.1_2308398_2311362_+	pfam18483, Bact_lectin, Bacterial lectin	NA|359aa|down_4|NZ_CP047800.1_2311745_2312822_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_5|NZ_CP047800.1_2312918_2313152_+	NA	NA|103aa|down_6|NZ_CP047800.1_2313259_2313568_-	NA	NA|89aa|down_7|NZ_CP047800.1_2313711_2313978_-	NA	NA|603aa|down_8|NZ_CP047800.1_2314261_2316070_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_9|NZ_CP047800.1_2316201_2316594_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	6	2380014-2380092	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	5	2380037-2380069|2380037-2380069|2380037-2380069|2380037-2380069|2380037-2380069	NZ_CP047800.1_1201875-1201907|NZ_CP047800.1_2771914-2771882|NZ_CP047800.1_1238241-1238273|NZ_CP047800.1_1238297-1238329|NZ_CP047800.1_1238353-1238385	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047800.1_2376938_2377598_-,NA|36aa|up_0|NZ_CP047800.1_2379587_2379695_+,NA	NA|693aa|up_9|NZ_CP047800.1_2369400_2371479_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047800.1_2371616_2373026_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047800.1_2373311_2374118_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047800.1_2374180_2374837_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047800.1_2374949_2375423_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047800.1_2375545_2376757_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047800.1_2376938_2377598_-	NA	NA|381aa|up_2|NZ_CP047800.1_2377657_2378800_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047800.1_2379067_2379454_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047800.1_2379587_2379695_+	NA	NA|588aa|down_0|NZ_CP047800.1_2380397_2382161_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047800.1_2382185_2383919_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047800.1_2384371_2385058_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047800.1_2385035_2386394_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047800.1_2386395_2387403_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047800.1_2387380_2388496_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047800.1_2388506_2389199_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047800.1_2389209_2389677_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047800.1_2389728_2390706_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047800.1_2390707_2391655_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	7	2544758-2544838	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	13	2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813|2544783-2544813	NZ_CP047800.1_1238301-1238331|NZ_CP047800.1_1238357-1238387|NZ_CP047800.1_398493-398463|NZ_CP047800.1_681642-681612|NZ_CP047800.1_887727-887697|NZ_CP047800.1_1417490-1417460|NZ_CP047800.1_1684984-1684954|NZ_CP047800.1_593063-593093|NZ_CP047800.1_593179-593209|NZ_CP047800.1_990287-990317|NZ_CP047800.1_1201879-1201909|NZ_CP047800.1_2028755-2028785|NZ_CP047800.1_2555584-2555614	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047800.1_2544879_2545065_-,NA|84aa|down_5|NZ_CP047800.1_2548204_2548456_-,NA|106aa|down_8|NZ_CP047800.1_2553577_2553895_-,NA|55aa|down_9|NZ_CP047800.1_2554139_2554304_-	NA|202aa|up_9|NZ_CP047800.1_2537650_2538256_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047800.1_2538425_2539430_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047800.1_2539460_2539967_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047800.1_2539968_2540463_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047800.1_2540525_2541785_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047800.1_2541781_2542267_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047800.1_2542280_2542727_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047800.1_2542732_2542966_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047800.1_2542972_2543572_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047800.1_2543591_2544614_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047800.1_2544879_2545065_-	NA	NA|117aa|down_1|NZ_CP047800.1_2545190_2545541_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047800.1_2545642_2546854_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047800.1_2546846_2547287_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047800.1_2547448_2548213_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047800.1_2548204_2548456_-	NA	NA|422aa|down_6|NZ_CP047800.1_2548844_2550110_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047800.1_2550226_2553394_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047800.1_2553577_2553895_-	NA	NA|55aa|down_9|NZ_CP047800.1_2554139_2554304_-	NA
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	8	2652796-2652881	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047800.1_2663843_2664002_-,NA|35aa|down_8|NZ_CP047800.1_2664681_2664786_+,NA|364aa|down_9|NZ_CP047800.1_2665218_2666310_-	NA|396aa|up_9|NZ_CP047800.1_2628040_2629228_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP047800.1_2629246_2629930_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_7|NZ_CP047800.1_2630106_2631450_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP047800.1_2631548_2632022_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP047800.1_2632344_2633787_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP047800.1_2633934_2634999_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP047800.1_2641239_2642148_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047800.1_2642336_2643146_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047800.1_2643147_2644080_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047800.1_2644106_2645462_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047800.1_2653503_2654610_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047800.1_2654609_2655044_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047800.1_2655055_2657188_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047800.1_2657222_2658761_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047800.1_2659441_2661247_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047800.1_2661478_2662261_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047800.1_2662328_2663186_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047800.1_2663843_2664002_-	NA	NA|35aa|down_8|NZ_CP047800.1_2664681_2664786_+	NA	NA|364aa|down_9|NZ_CP047800.1_2665218_2666310_-	NA
GCF_009913055.1_ASM991305v1	NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	9	2665121-2665202	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047800.1_2663843_2664002_-,NA|35aa|up_0|NZ_CP047800.1_2664681_2664786_+,NA|364aa|down_0|NZ_CP047800.1_2665218_2666310_-,NA|77aa|down_5|NZ_CP047800.1_2670096_2670327_+	NA|2482aa|up_9|NZ_CP047800.1_2645739_2653185_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047800.1_2653503_2654610_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047800.1_2654609_2655044_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047800.1_2655055_2657188_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047800.1_2657222_2658761_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047800.1_2659441_2661247_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047800.1_2661478_2662261_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047800.1_2662328_2663186_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047800.1_2663843_2664002_-	NA	NA|35aa|up_0|NZ_CP047800.1_2664681_2664786_+	NA	NA|364aa|down_0|NZ_CP047800.1_2665218_2666310_-	NA	NA|326aa|down_1|NZ_CP047800.1_2666575_2667553_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047800.1_2667554_2667875_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047800.1_2668026_2668692_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047800.1_2669127_2670066_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047800.1_2670096_2670327_+	NA	NA|458aa|down_6|NZ_CP047800.1_2671000_2672374_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047800.1_2672830_2673244_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047800.1_2673443_2673887_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047800.1_2674007_2674718_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
