The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	0	46449	2819269	protease,head,capsid,portal,terminase,tail,integrase,holin	Staphylococcus_phage(93.33%)	46	40585:40601	48019:48035
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_160198860.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.8e-214
WP_000238237.1|4774_5035_+	hypothetical protein	NA	A0A0H3U504	Staphylococcus_phage	100.0	6.4e-42
WP_000150936.1|5047_5332_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5315_5678_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|5674_6079_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000565498.1|6075_6483_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268740.1|6483_7128_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|7169_7394_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7443_7794_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_000567396.1|12564_14049_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_000582152.1|14064_17847_+	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
WP_001000058.1|17839_17992_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262621.1|18037_18325_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|18380_18755_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034846.1|19166_19949_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_011447039.1|20151_20328_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20380_20488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20539_20794_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861026.1|20805_21561_+	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
WP_000920042.1|21751_22243_+	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000727645.1|23318_23768_-	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000702262.1|24450_24801_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24853_25114_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|25428_25608_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001557458.1|26565_27996_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000671712.1|28010_28301_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068542.1|28579_29866_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|30065_30164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|30406_30583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160198861.1|30840_31221_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991306.1|31217_32114_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000645727.1|32114_32795_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763043.1|32791_33664_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
WP_001221651.1|33663_34404_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|34469_35033_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|35153_35678_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|35737_36295_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713072.1|36291_37134_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188043.1|37190_38231_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|38681_38855_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086114944.1|39877_41029_+|integrase	tyrosine-type recombinase/integrase	integrase	P97010	Streptococcus_pyogenes_phage	32.2	8.1e-12
40585:40601	attL	AATAGTTTTGAAAAATA	NA	NA	NA	NA
WP_106905822.1|41067_43095_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_020977410.1|45603_46449_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	33.9	1.3e-30
48019:48035	attR	AATAGTTTTGAAAAATA	NA	NA	NA	NA
>prophage 2
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	53068	55095	2819269		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|53068_53629_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275727.1|53997_55095_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
>prophage 3
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	59125	61409	2819269		Bacillus_virus(100.0%)	2	NA	NA
WP_000284436.1|59125_60595_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000040866.1|60587_61409_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 4
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	65110	71877	2819269		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|65110_66406_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|66514_66817_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272056.1|66988_67681_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|67677_69870_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774556.1|69873_71877_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
>prophage 5
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	79051	84080	2819269		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|79051_79999_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147865.1|80079_81441_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.6	1.4e-103
WP_000548781.1|81610_82141_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140172.1|82387_83458_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|83525_84080_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 6
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	87532	87946	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001557448.1|87532_87946_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.3	6.7e-17
>prophage 7
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	92941	93571	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|92941_93571_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 8
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	109051	110788	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|109051_110788_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 9
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	124187	181167	2819269	protease,tRNA,transposase	Staphylococcus_phage(88.89%)	55	NA	NA
WP_001557163.1|124187_125507_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|126090_127152_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_031875741.1|127409_128867_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|128853_129582_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|129717_130860_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_160198862.1|130864_131335_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|131493_132093_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|132117_132270_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|132817_133213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116228.1|133408_134794_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|135246_136068_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437969.1|136230_137343_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045135.1|137364_137988_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|138343_138808_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992518.1|138986_140111_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|140179_140524_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|141062_141161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|141451_142648_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584628.1|142637_145574_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|145570_146512_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|146632_147595_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|147799_148357_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|149091_149457_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|149598_150021_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|150154_150895_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551836.1|150887_152111_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|152234_152738_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|152900_153011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|153000_154038_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|154095_155019_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167542.1|155042_156443_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|156765_157320_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_010922839.1|158679_159462_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821658.1|159742_160462_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|160496_161225_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_001236362.1|162188_162944_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000736712.1|163226_164003_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848318.1|164554_165331_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|165351_165588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001253432.1|165665_166160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160198863.1|166993_167788_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	97.7	5.2e-143
WP_000878802.1|169165_170086_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
WP_000782463.1|170087_171071_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|171440_172232_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|172236_172710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469591.1|172965_173184_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_001092780.1|173656_174238_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_001039427.1|175201_175909_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001039454.1|176033_176756_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001038872.1|176813_177533_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	1.3e-129
WP_001038704.1|177653_178373_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|178321_178429_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|178530_179250_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001791797.1|179312_179447_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160198864.1|179427_181167_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.8	1.3e-287
>prophage 10
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	185138	232745	2819269	protease,tRNA	Staphylococcus_phage(94.44%)	43	NA	NA
WP_000414216.1|185138_185711_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_000627540.1|185811_186153_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_000669024.1|186193_186820_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	79.8	3.1e-74
WP_000070642.1|186894_187890_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_001795210.1|187970_188621_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_012840523.1|188923_189379_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348364.1|189537_191016_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778528.1|191020_192022_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000718107.1|192018_192276_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|192341_192815_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001822900.1|192819_193566_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|193943_195536_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933820.1|195907_197104_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366163.1|197225_198134_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453306.1|198345_199179_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000623470.1|201175_201529_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|201525_201891_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|202146_202449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|202708_203422_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168903.1|203861_204497_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|204792_205236_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|205222_205666_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|205778_206249_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|206447_206672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|206947_207802_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|207888_209181_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|209180_209495_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|210017_211520_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384185.1|212012_213044_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493887.1|213050_213683_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_001159037.1|213693_214875_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008549.1|214887_215352_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196362.1|215473_216475_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|216586_216706_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|216708_217536_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|218107_218509_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|218631_219195_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|219191_220145_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|220254_221436_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_001108730.1|221726_224141_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836461.1|224162_224474_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001050566.1|224799_231360_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000285020.1|231476_232745_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
>prophage 11
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	244036	249364	2819269		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|244036_244894_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|244922_245519_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118314.1|245539_249364_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 12
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	258104	259811	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862095.1|258104_259811_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 13
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	266415	269046	2819269	protease,tRNA	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|266415_267678_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|267771_269046_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 14
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	272815	276948	2819269		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808849.1|272815_274420_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291420.1|274406_275564_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553924.1|275678_276125_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174280.1|276204_276948_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 15
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	294540	297738	2819269		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226919.1|294540_297738_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.5	4.2e-135
>prophage 16
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	302671	304429	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|302671_304429_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 17
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	309313	317477	2819269		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|309313_310018_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|310017_311679_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_000849428.1|312177_313665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038317.1|313958_316589_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114454.1|316604_317477_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
>prophage 18
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	321392	332545	2819269	protease,tRNA	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|321392_322313_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|322405_322528_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|322725_324663_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_031875736.1|325088_326582_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|326810_327338_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|327366_327567_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|327613_327970_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|328111_328720_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280022.1|328738_329668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|329672_329783_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|329830_331132_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|331282_332545_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 19
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	342112	344743	2819269	tRNA	Catovirus(100.0%)	1	NA	NA
WP_160198867.1|342112_344743_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	6.3e-153
>prophage 20
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	354677	390057	2819269	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005768.1|354677_355682_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|355683_356709_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|356731_357871_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|357889_358150_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|358424_360704_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595011.1|360906_363180_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|363201_363720_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058587.1|364147_366337_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|366348_366801_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|366797_367673_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|368133_369396_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|369411_371178_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|371510_371639_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|371638_372412_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102729.1|372572_373847_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.4e-105
WP_000704122.1|373931_374354_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|374453_374636_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|374675_374822_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985878.1|375058_376072_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409157.1|376383_377526_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
WP_000066097.1|377526_378645_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567017.1|379106_379775_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283312.1|379776_382254_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734075.1|382596_385227_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|385289_385550_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|385553_385982_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|385996_386305_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342258.1|386589_387228_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	3.2e-10
WP_000137774.1|387230_388154_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|388165_389434_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|389433_390057_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 21
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	396729	397950	2819269		Lactococcus_phage(100.0%)	1	NA	NA
WP_000542320.1|396729_397950_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	2.2e-52
>prophage 22
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	406736	412900	2819269		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|406736_407198_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953309.1|407256_409404_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282563.1|409460_410435_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|410479_410731_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|411076_412900_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 23
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	416393	419501	2819269		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|416393_418226_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|418361_419501_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 24
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	425971	426919	2819269		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|425971_426919_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 25
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	429972	443718	2819269	tRNA	Klosneuvirus(28.57%)	13	NA	NA
WP_001030080.1|429972_431364_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001797828.1|431698_432322_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|432332_433151_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217257.1|433211_435029_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
WP_001283055.1|435252_436359_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624577.1|436489_437167_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683940.1|437169_438270_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_001062177.1|438383_439730_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|439739_440630_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|440755_441541_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564315.1|441582_442446_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|442432_442843_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|443118_443718_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 26
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	449891	450515	2819269		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|449891_450515_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 27
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	456059	458871	2819269		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019691.1|456059_457406_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.2	1.7e-61
WP_000202188.1|457398_458871_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 28
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	466370	472941	2819269		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|466370_467708_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|467700_467931_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183383.1|467908_468790_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	2.0e-10
WP_001124985.1|469221_469674_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942210.1|469689_471369_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|471519_472941_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 29
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	479770	481177	2819269		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|479770_481177_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 30
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	487603	489088	2819269		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|487603_489088_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 31
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	492615	504225	2819269		Klosneuvirus(16.67%)	12	NA	NA
WP_001171335.1|492615_493524_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	32.0	4.4e-05
WP_000365240.1|493605_494148_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000392691.1|494252_494702_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000447733.1|494750_495638_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183429.1|495715_496222_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|496313_497045_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368656.1|497037_497580_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|497572_498310_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|498442_499168_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987774.1|499148_500900_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_001557355.1|501143_502070_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033761.1|502062_504225_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	2.7e-109
>prophage 32
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	508653	511332	2819269		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|508653_508902_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|509009_509963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902099.1|509952_511332_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
>prophage 33
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	520756	526223	2819269		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|520756_521029_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|521459_522032_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|522034_522760_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001817755.1|522776_523721_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|523812_524262_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|524470_524671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269921.1|525056_526223_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
>prophage 34
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	529885	530461	2819269		Bacillus_virus(100.0%)	1	NA	NA
WP_160198868.1|529885_530461_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	26.7	6.0e-08
>prophage 35
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	533833	541339	2819269	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_160198869.1|533833_535036_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_000049921.1|535022_535994_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|536017_538711_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858779.1|539032_540325_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000362218.1|540652_541339_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
>prophage 36
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	545079	545706	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|545079_545706_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 37
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	555031	555910	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|555031_555910_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 38
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	593357	602747	2819269		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|593357_594062_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|594306_594501_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|594512_594764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404645.1|594801_595926_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|595941_596379_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934894.1|596802_597759_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|597958_598438_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|598452_599292_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159900.1|599377_599911_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|599903_600332_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473653.1|600343_600844_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|600843_601065_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342132.1|601256_602747_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
>prophage 39
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	606156	608168	2819269		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|606156_606816_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|606812_608168_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 40
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	614333	615125	2819269		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|614333_615125_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 41
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	618665	623696	2819269	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|618665_619802_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|619833_620463_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|620481_620751_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|620913_621222_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|621392_621593_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|621789_622191_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|622430_623696_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 42
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	631743	633345	2819269		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|631743_633345_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 43
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	638434	641888	2819269		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|638434_639286_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|639292_639934_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|640073_641888_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 44
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	645302	646004	2819269		Tupanvirus(100.0%)	1	NA	NA
WP_000571259.1|645302_646004_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.0e-13
>prophage 45
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	654102	656457	2819269		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153613.1|654102_654885_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	2.7e-27
WP_000173833.1|654886_655885_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.9	8.5e-34
WP_000604816.1|655890_656457_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 46
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	660775	662038	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|660775_662038_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 47
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	671697	676091	2819269		Bacillus_phage(50.0%)	2	NA	NA
WP_001289562.1|671697_674100_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.4	7.9e-94
WP_001557340.1|674099_676091_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	1.0e-115
>prophage 48
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	682082	683729	2819269		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|682082_683729_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 49
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	687398	688520	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691301.1|687398_688520_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 50
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	692670	698326	2819269		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|692670_693294_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380730.1|693673_694537_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|694610_694715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688122.1|694711_695689_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|695845_696115_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|696568_696718_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082544.1|696808_698326_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 51
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	708464	712740	2819269		Bacillus_phage(50.0%)	6	NA	NA
WP_061713869.1|708464_708998_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	42.7	9.8e-21
WP_001027143.1|709136_709325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|709437_710040_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670307.1|710036_711128_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603970.1|711131_711863_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|711831_712740_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 52
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	717123	721426	2819269	head	Staphylococcus_phage(80.0%)	7	NA	NA
WP_000899334.1|717123_717360_-|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.6	2.3e-22
WP_000956747.1|717405_717657_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|717784_717889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|718399_718585_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001002340.1|719818_720025_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001795785.1|720316_720541_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	5.0e-19
WP_001793526.1|721228_721426_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 53
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	726495	726972	2819269		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|726495_726972_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 54
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	732914	739396	2819269		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|732914_733733_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|734207_734750_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516269.1|734755_736765_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.0	4.8e-60
WP_000073352.1|736777_739396_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	8.5e-41
>prophage 55
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	748810	749854	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|748810_749854_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 56
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	754052	759593	2819269		Bacillus_virus(33.33%)	4	NA	NA
WP_000664775.1|754052_755339_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.4	7.9e-16
WP_000089941.1|755338_756604_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|756634_757348_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001811366.1|757352_759593_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 57
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	764733	776546	2819269	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|764733_765705_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282298.1|765719_766637_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|766805_767156_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|767541_769659_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|769663_769981_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|769977_770262_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097460.1|770282_771458_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036633.1|771478_771946_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001801936.1|772235_776546_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 58
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	780819	781590	2819269		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|780819_781590_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 59
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	786369	800041	2819269	protease,tRNA	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|786369_787773_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|787838_788384_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015601.1|788380_789277_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	3.6e-31
WP_000195254.1|789694_791002_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|791157_793233_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000593194.1|793406_794279_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672869.1|794451_795696_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041666.1|795723_796842_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110253.1|797068_797977_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|797998_799165_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176393.1|799273_800041_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 60
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	813425	815675	2819269		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|813425_814157_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|814272_814506_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|814940_815675_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 61
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	826045	828040	2819269		Moumouvirus(100.0%)	1	NA	NA
WP_000579563.1|826045_828040_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 62
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	831187	832123	2819269	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|831187_832123_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 63
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	837124	839381	2819269		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|837124_838324_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|838539_838758_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|838757_839381_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 64
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	842695	843307	2819269		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|842695_843307_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 65
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	847274	851885	2819269		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|847274_848375_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|848376_849651_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|849668_850550_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|850577_851885_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 66
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	856349	859103	2819269	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|856349_859103_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 67
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	878685	878874	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245796.1|878685_878874_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	2.5e-19
>prophage 68
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	887890	889850	2819269		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|887890_888115_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|888071_888218_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857488.1|888890_889850_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.3	7.4e-35
>prophage 69
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	905480	910038	2819269		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|905480_905795_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249272.1|905967_908316_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	3.2e-15
WP_160198874.1|908325_910038_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
>prophage 70
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	915040	916099	2819269	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|915040_916099_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 71
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	928045	930953	2819269		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|928045_928528_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|928529_929072_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|929141_929531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|929533_929788_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757575.1|930026_930953_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	2.2e-12
>prophage 72
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	942470	944318	2819269		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|942470_944318_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 73
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	952449	961282	2819269		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|952449_953544_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|953556_954096_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|954239_954515_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|954682_956089_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863439.1|956092_957385_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|957475_958453_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|958456_959569_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668336.1|959739_960366_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957037.1|960730_961282_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.0	1.6e-13
>prophage 74
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	967294	971674	2819269		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|967294_967528_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040051.1|967764_969483_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|969485_969752_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|969905_970448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685067.1|970501_971674_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
>prophage 75
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	975105	989867	2819269		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921965.1|975105_976506_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|976498_977305_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101899.1|977571_978819_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709277.1|978840_980319_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_000238669.1|980333_980900_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030811.1|980902_981931_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483720.1|981923_983408_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000032740.1|983386_985576_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666806.1|985568_986240_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|986241_986505_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|986504_987209_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010413.1|987212_988337_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|988323_988806_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000225836.1|989006_989867_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	4.4e-39
>prophage 76
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1000321	1004068	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074534.1|1000321_1004068_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 77
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1008843	1059455	2819269	bacteriocin,protease,transposase	Streptococcus_phage(33.33%)	51	NA	NA
WP_001089094.1|1008843_1010025_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284458.1|1010062_1010392_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184945.1|1010629_1011451_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150197.1|1011443_1012247_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526694.1|1012233_1013907_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_160198876.1|1013893_1015105_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_001791731.1|1015181_1015286_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070966.1|1015436_1016375_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|1016426_1016978_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|1017067_1017358_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_001790177.1|1017421_1017553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1017598_1018558_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1019045_1019402_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1019490_1019628_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1019768_1020059_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1020146_1020788_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_000668627.1|1020784_1021105_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870829.1|1021107_1023072_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001797239.1|1023115_1023388_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001792055.1|1023397_1023499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033865.1|1024414_1025017_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1025031_1025208_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668818.1|1025406_1026393_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1026473_1026692_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1026901_1027471_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414165.1|1027957_1029469_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021865.1|1029607_1030966_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001795272.1|1030982_1033307_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1033525_1034329_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049950.1|1034630_1036193_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
WP_001795833.1|1036192_1036453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000340119.1|1036433_1037918_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258645.1|1038350_1039526_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001795273.1|1039485_1040694_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600387.1|1040806_1041316_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001288675.1|1041509_1042268_-	esterase family protein	NA	NA	NA	NA	NA
WP_000570687.1|1042412_1043981_-	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000933105.1|1044322_1045408_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000933195.1|1045604_1046375_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000395153.1|1046652_1048497_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000062407.1|1048506_1049892_-	magnesium transporter	NA	NA	NA	NA	NA
WP_000669923.1|1049912_1050767_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_001270834.1|1050763_1051573_-	NAD kinase	NA	NA	NA	NA	NA
WP_001077683.1|1051589_1052225_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001242103.1|1052241_1052589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224619.1|1052774_1053368_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_000214070.1|1053471_1053837_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000896697.1|1053859_1054666_+	DsbA family protein	NA	NA	NA	NA	NA
WP_000082725.1|1055125_1056934_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
WP_000959282.1|1056981_1057968_-	competence protein CoiA	NA	NA	NA	NA	NA
WP_001557163.1|1058135_1059455_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 78
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1064266	1066236	2819269		Bacillus_virus(100.0%)	2	NA	NA
WP_000427767.1|1064266_1065247_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.3e-15
WP_001067052.1|1065249_1066236_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
>prophage 79
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1069887	1071901	2819269		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|1069887_1070829_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|1070818_1071901_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 80
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1080492	1087302	2819269		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|1080492_1081638_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047069.1|1081747_1082617_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160198877.1|1082675_1085285_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.2	7.2e-117
WP_001044230.1|1085487_1087302_-	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 81
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1092421	1096075	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000154921.1|1092421_1096075_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	2.0e-24
>prophage 82
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1106229	1113411	2819269		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|1106229_1107159_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_031875753.1|1107685_1108930_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1109038_1110229_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838029.1|1110536_1111664_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1112025_1112403_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|1112817_1113411_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 83
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1123331	1126959	2819269		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009692.1|1123331_1124807_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	4.5e-47
WP_000046076.1|1124937_1126146_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143495.1|1126599_1126959_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.7e-14
>prophage 84
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1131002	1133671	2819269		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1131002_1132217_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129659.1|1132213_1133671_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	2.6e-39
>prophage 85
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1136893	1196170	2819269	plate,head,capsid,portal,transposase,terminase,tail,integrase,holin	Staphylococcus_phage(72.06%)	82	1162117:1162133	1195786:1195802
WP_001557163.1|1136893_1138213_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000598444.1|1138418_1138802_-	YutD family protein	NA	NA	NA	NA	NA
WP_000201875.1|1138931_1139849_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_001241246.1|1139932_1141252_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000927632.1|1141278_1142106_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_000608129.1|1142118_1142967_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_016170465.1|1143014_1143098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000267236.1|1143351_1144419_-	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_000582326.1|1144432_1145473_-	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_000274029.1|1145837_1146152_+	hypothetical protein	NA	NA	NA	NA	NA
WP_061713861.1|1146877_1147252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061713860.1|1147252_1147702_-	SocA family protein	NA	I6R0L8	Salmonella_phage	38.7	2.4e-20
WP_000382163.1|1148034_1148235_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1148221_1148332_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1148402_1148555_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001035620.1|1148929_1149487_+	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001141520.1|1149546_1150959_-	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	99.8	2.2e-285
WP_000351119.1|1150945_1151221_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398862.1|1151276_1151672_-	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_061713859.1|1151676_1152915_-|plate	BppU family phage baseplate upper protein	plate	A0A2H4JB41	uncultured_Caudovirales_phage	99.3	3.8e-209
WP_000524007.1|1152927_1154826_-	CHAP domain-containing protein	NA	Q8SDT1	Staphylococcus_phage	100.0	0.0e+00
WP_000466777.1|1154962_1155262_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_015990323.1|1155302_1155476_-	XkdX family protein	NA	B2ZZ00	Staphylococcus_phage	100.0	1.0e-27
WP_061713858.1|1155485_1155863_-	DUF2977 domain-containing protein	NA	A0A2H4PQW4	Staphylococcus_phage	99.2	1.2e-60
WP_031791184.1|1155862_1157686_-|plate	BppU family phage baseplate upper protein	plate	W5R8J5	Staphylococcus_phage	98.7	2.0e-291
WP_061713857.1|1157685_1159596_-	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	99.1	0.0e+00
WP_061713856.1|1159610_1161512_-	peptidase	NA	I1W634	Staphylococcus_phage	96.7	0.0e+00
WP_001557971.1|1161520_1162468_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
1162117:1162133	attL	TGTTTTTATCTAATTTC	NA	NA	NA	NA
WP_061713855.1|1162480_1165945_-	hypothetical protein	NA	Q4ZDL9	Staphylococcus_virus	99.3	4.4e-263
WP_000105585.1|1165961_1166306_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	7.2e-57
WP_001100161.1|1166335_1166701_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002577.1|1166763_1167345_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_031900480.1|1167363_1167747_-	hypothetical protein	NA	E0Y3L5	Staphylococcus_virus	99.2	1.3e-67
WP_001017810.1|1167758_1168106_-	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	99.1	2.0e-59
WP_061713854.1|1168105_1168408_-	hypothetical protein	NA	B2ZYY8	Staphylococcus_phage	97.0	3.3e-50
WP_061713853.1|1168404_1168737_-|head,tail	phage head-tail connector protein	head,tail	B7T0D4	Staphylococcus_virus	94.5	3.3e-51
WP_031786118.1|1168745_1169033_-	hypothetical protein	NA	B7T0D3	Staphylococcus_virus	92.6	3.8e-43
WP_000438511.1|1169054_1170029_-|capsid	phage major capsid protein	capsid	E0Y3L0	Staphylococcus_virus	100.0	2.2e-183
WP_160198879.1|1170042_1170651_-	DUF4355 domain-containing protein	NA	S4V984	Staphylococcus_phage	87.4	2.3e-58
WP_000072205.1|1170759_1170930_-	hypothetical protein	NA	Q4ZDN0	Staphylococcus_virus	100.0	4.3e-23
WP_061713852.1|1172014_1173550_-|portal	phage portal protein	portal	Q4ZDN2	Staphylococcus_virus	98.4	2.3e-288
WP_000169946.1|1173560_1174838_-|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	100.0	3.0e-249
WP_001566315.1|1174824_1175265_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	2.4e-73
WP_000162701.1|1175452_1175875_-	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000990005.1|1175898_1176045_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_011447035.1|1176045_1176234_-	transcriptional activator RinB	NA	Q77FU4	Staphylococcus_phage	100.0	5.1e-25
WP_001125015.1|1176221_1176422_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195782.1|1176396_1176585_-	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_015984502.1|1176621_1177155_-	dUTP nucleotidohydrolase	NA	A1KX16	Staphylococcus_virus	100.0	1.1e-96
WP_072471035.1|1177147_1177342_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	87.5	8.5e-23
WP_031771431.1|1177304_1177559_-	DUF1024 family protein	NA	A1KX15	Staphylococcus_virus	96.4	9.4e-38
WP_061713851.1|1177573_1177822_-	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	96.3	8.0e-42
WP_001622141.1|1177822_1178182_-	hypothetical protein	NA	B2ZYW3	Staphylococcus_phage	97.5	3.2e-60
WP_061713850.1|1178182_1178368_-	DUF3113 family protein	NA	A0A0E3TAK3	Staphylococcus_phage	96.7	5.1e-25
WP_001123688.1|1178786_1179008_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000628833.1|1179020_1179179_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	100.0	3.4e-22
WP_061713849.1|1179175_1179961_-	ATP-binding protein	NA	A0A059T7P1	Staphylococcus_phage	98.9	3.0e-143
WP_061713848.1|1179973_1180705_-	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	67.6	2.4e-70
WP_061713847.1|1180768_1181617_+	DUF4393 domain-containing protein	NA	W5R9J9	Staphylococcus_phage	99.3	4.2e-159
WP_061713846.1|1181723_1182398_-	hypothetical protein	NA	A9CR65	Staphylococcus_phage	97.8	1.4e-128
WP_061713845.1|1182409_1182928_-	hypothetical protein	NA	A9CR64	Staphylococcus_phage	99.4	3.9e-83
WP_061713844.1|1182957_1183731_-	AAA family ATPase	NA	Q4ZDY6	Staphylococcus_virus	99.6	4.7e-141
WP_000002516.1|1183730_1184210_-	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_061713843.1|1184224_1184485_-	DUF1108 family protein	NA	A1KX65	Staphylococcus_virus	97.7	5.8e-43
WP_040968664.1|1184548_1184863_-	helix-turn-helix transcriptional regulator	NA	I1W620	Staphylococcus_phage	99.0	1.1e-51
WP_000048123.1|1184867_1185038_-	DUF1270 domain-containing protein	NA	B7T099	Staphylococcus_virus	98.2	9.7e-23
WP_061713842.1|1185030_1185252_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	98.6	3.3e-31
WP_000993183.1|1185265_1185715_-	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
WP_061713840.1|1185754_1185979_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	98.6	1.2e-33
WP_029625612.1|1185979_1186759_-	phage antirepressor KilAC domain-containing protein	NA	M1RZB2	Staphylococcus_phage	93.0	6.2e-133
WP_000394020.1|1186946_1187150_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
WP_001121116.1|1187163_1187400_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1187551_1187866_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_031783010.1|1187878_1188343_+	toxin	NA	A0A0N9BAX8	Staphylococcus_phage	97.4	6.0e-83
WP_000391592.1|1188374_1189280_+	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_000143212.1|1189216_1189417_-	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_061713839.1|1189528_1190578_+|integrase	site-specific integrase	integrase	A0A0H4ISP4	Staphylococcus_phage	99.4	7.7e-203
WP_001074405.1|1190645_1192043_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|1192193_1192658_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807663.1|1192647_1193889_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205567.1|1194003_1195311_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1195408_1196170_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
1195786:1195802	attR	TGTTTTTATCTAATTTC	NA	NA	NA	NA
>prophage 86
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1199657	1200683	2819269		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571213.1|1199657_1200683_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
>prophage 87
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1203943	1209121	2819269		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1203943_1204300_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147952.1|1204443_1204764_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1204914_1205454_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150011.1|1205536_1206253_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.1	1.5e-16
WP_000974460.1|1206400_1206823_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1207221_1207716_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_160198880.1|1207870_1208488_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001802951.1|1208560_1209121_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
>prophage 88
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1212521	1213765	2819269		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1212521_1212722_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_000141557.1|1213078_1213765_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	1.7e-33
>prophage 89
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1222974	1231851	2819269		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757397.1|1222974_1223703_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001057759.1|1223894_1224041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|1224056_1224380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085183.1|1225701_1226166_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050048.1|1226187_1228560_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001165959.1|1228593_1229334_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|1229449_1229683_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1229749_1230208_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1230546_1231851_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 90
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1241078	1247009	2819269		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1241078_1241666_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1242229_1243174_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1243284_1244280_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1244276_1245188_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1246073_1247009_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 91
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1251456	1254303	2819269		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662677.1|1251456_1254303_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 92
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1257621	1258461	2819269		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000753319.1|1257621_1258461_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 93
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1264539	1270245	2819269		Streptococcus_phage(66.67%)	5	NA	NA
WP_001557172.1|1264539_1265622_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	9.9e-44
WP_000686344.1|1265985_1266852_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1266995_1267637_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258150.1|1267801_1268857_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1269174_1270245_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 94
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1279524	1302997	2819269		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1279524_1280286_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|1280282_1281239_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1281225_1282197_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1282235_1282391_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1282571_1283543_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|1283660_1285766_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1285728_1286127_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|1286927_1287794_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1287813_1288314_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1288654_1290160_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|1290237_1290339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1290429_1291347_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197262.1|1292225_1292768_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1293106_1294165_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000180991.1|1294404_1295919_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589248.1|1295911_1296889_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000983677.1|1297110_1298892_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525106.1|1298903_1300787_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1301056_1302997_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 95
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1306136	1315983	2819269		Pandoravirus(12.5%)	12	NA	NA
WP_001217796.1|1306136_1307288_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|1307271_1307865_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1308215_1308884_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1308885_1309305_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1309308_1310022_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1310120_1310705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1310984_1311425_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1311767_1312241_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1312215_1312902_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1312901_1313957_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|1314028_1315012_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931238.1|1315143_1315983_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.5	9.6e-55
>prophage 96
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1327595	1328969	2819269		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952038.1|1327595_1328969_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.6	2.3e-45
>prophage 97
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1333946	1340226	2819269		Bacillus_phage(33.33%)	6	NA	NA
WP_000857598.1|1333946_1335620_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737160.1|1335616_1337248_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_000469894.1|1337466_1338342_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1338513_1339197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148826.1|1339199_1339658_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820897.1|1339659_1340226_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 98
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1347016	1347490	2819269		Pandoravirus(100.0%)	1	NA	NA
WP_000833486.1|1347016_1347490_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	1.6e-14
>prophage 99
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1352752	1353550	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1352752_1353550_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 100
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1358381	1359143	2819269		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1358381_1359143_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 101
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1363517	1364561	2819269		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030772.1|1363517_1364561_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 102
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1371084	1371882	2819269		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1371084_1371882_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 103
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1375107	1379066	2819269		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1375107_1376835_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793067.1|1377255_1378551_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1378667_1379066_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 104
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1386000	1386744	2819269		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1386000_1386744_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 105
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1399283	1399844	2819269	integrase	Streptococcus_phage(100.0%)	1	1393437:1393451	1403434:1403448
1393437:1393451	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1399283_1399844_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1399283_1399844_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1403434:1403448	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 106
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1412672	1416026	2819269		Tupanvirus(50.0%)	3	NA	NA
WP_031875758.1|1412672_1413683_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	2.5e-33
WP_001792725.1|1414181_1414703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031875757.1|1414730_1416026_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 107
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1423598	1424921	2819269		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860592.1|1423598_1424921_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	2.6e-107
>prophage 108
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1436225	1436882	2819269		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1436225_1436882_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 109
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1440523	1443844	2819269		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1440523_1441900_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1442443_1443844_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 110
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1467283	1467946	2819269		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1467283_1467946_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 111
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1474529	1475717	2819269		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250823.1|1474529_1475717_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
>prophage 112
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1478745	1489699	2819269		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1478745_1480827_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1480949_1481420_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1481485_1481899_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1481996_1482251_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|1482387_1485984_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1486147_1489699_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 113
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1493382	1498165	2819269	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1493382_1493931_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1493943_1494126_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1494181_1494325_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872882.1|1494439_1495009_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664737.1|1495089_1495614_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1495613_1496360_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1496367_1496772_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631969.1|1496764_1498165_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.2e-54
>prophage 114
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1504176	1506633	2819269	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1504176_1506633_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 115
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1525438	1535759	2819269	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1525438_1526926_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1526978_1527071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613722.1|1527464_1527941_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1527937_1528303_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167944.1|1528280_1529084_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	3.0e-21
WP_000057594.1|1529349_1530282_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148598.1|1530460_1531342_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1531569_1533663_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1533919_1534459_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176709.1|1534463_1535759_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 116
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1545015	1547480	2819269		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1545015_1545981_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252543.1|1546127_1547480_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 117
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1553406	1556504	2819269	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051129.1|1553406_1555380_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	1.5e-93
WP_000279926.1|1555664_1556504_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 118
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1560410	1561028	2819269		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1560410_1561028_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 119
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1570167	1571865	2819269		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1570167_1571865_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 120
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1588513	1594752	2819269		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1588513_1589518_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825530.1|1589849_1590692_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_160198885.1|1590728_1591388_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569281.1|1591391_1592417_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.7e-32
WP_001036648.1|1592711_1593854_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634098.1|1593846_1594752_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.8e-49
>prophage 121
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1620698	1623459	2819269		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072584.1|1620698_1621910_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	2.2e-44
WP_000028659.1|1621902_1623459_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
>prophage 122
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1635996	1641445	2819269	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1635996_1636269_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041880.1|1636667_1637372_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_000551643.1|1637763_1638300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|1638412_1639954_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1639978_1641445_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 123
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1650405	1651929	2819269		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930514.1|1650405_1651929_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 124
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1660243	1666572	2819269		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1660243_1660747_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1660767_1661064_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052484.1|1661307_1661499_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001218732.1|1661584_1662682_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1662693_1662897_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_031875799.1|1662926_1663808_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001557587.1|1663961_1664807_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655692.1|1665468_1666572_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 125
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1676510	1677353	2819269		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209551.1|1676510_1677353_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.8e-11
>prophage 126
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1698662	1701397	2819269		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280799.1|1698662_1699685_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191954.1|1699662_1700607_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449069.1|1700596_1701397_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.4	5.8e-41
>prophage 127
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1705794	1751009	2819269	protease,plate,head,capsid,portal,terminase,tail,integrase,holin	Staphylococcus_phage(92.19%)	64	1705549:1705566	1751103:1751120
1705549:1705566	attL	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
WP_000971220.1|1705794_1706250_-	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
WP_000448197.1|1706246_1706834_-	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_160198888.1|1707225_1708707_-	CHAP domain-containing protein	NA	A7TWL1	Staphylococcus_phage	97.0	5.6e-284
WP_000339146.1|1708718_1709021_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1709156_1709456_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1709501_1709666_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1709658_1710048_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031767589.1|1710047_1711514_-|plate	BppU family phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	98.8	2.7e-254
WP_000429558.1|1711513_1713424_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1713439_1713730_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1713729_1715313_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1715321_1716146_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_111034154.1|1716145_1722322_-|tail	phage tail tape measure protein	tail	A0A2I6PDS2	Staphylococcus_phage	99.4	0.0e+00
WP_000438833.1|1722335_1722494_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1722544_1722886_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_000169128.1|1722943_1723399_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1723490_1724132_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1724166_1724562_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110021.1|1724562_1724964_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	99.2	1.8e-67
WP_000395498.1|1724960_1725293_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1725304_1725583_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_025174076.1|1725651_1726815_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.7	1.6e-217
WP_031767595.1|1726826_1727600_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	97.3	1.2e-133
WP_020444675.1|1727583_1728822_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	98.1	2.7e-231
WP_000153538.1|1728826_1730518_-|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	99.5	0.0e+00
WP_031767599.1|1730507_1730813_-|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	99.0	6.4e-49
WP_000166257.1|1730938_1731259_-	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_000513699.1|1731419_1731857_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_078066162.1|1731869_1733237_-	DEAD/DEAH box helicase	NA	A0A2I6PDQ0	Staphylococcus_phage	99.8	1.3e-263
WP_000665204.1|1733217_1733508_-	VRR-NUC domain-containing protein	NA	A0A2I6PDQ7	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|1733641_1733746_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_094611253.1|1733848_1734904_-	hypothetical protein	NA	A0A2I6PDP5	Staphylococcus_phage	99.4	4.0e-207
WP_000265258.1|1736347_1736548_-	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_031767608.1|1736615_1736768_-	transcriptional regulator	NA	Q4ZCN4	Staphylococcus_virus	98.0	3.4e-19
WP_001072794.1|1736760_1736964_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_000132920.1|1736960_1737155_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_000195785.1|1737151_1737358_-	DUF1381 domain-containing protein	NA	A0A0F6N4I4	Staphylococcus_phage	100.0	1.1e-20
WP_000185651.1|1737394_1737925_-	dUTP pyrophosphatase	NA	A0A0F6N3L0	Staphylococcus_phage	100.0	1.7e-94
WP_000028421.1|1737917_1738100_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
WP_031766094.1|1738089_1738341_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	98.8	4.1e-38
WP_031895322.1|1738333_1738642_-	hypothetical protein	NA	C8CH03	Staphylococcus_phage	98.0	8.1e-52
WP_000979209.1|1738638_1738986_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_111023884.1|1739050_1739299_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	97.6	1.4e-41
WP_000111487.1|1739298_1739553_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	3.7e-42
WP_001164629.1|1739951_1740137_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1740149_1742102_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1742170_1742728_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762534.1|1742753_1743920_-	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	99.7	7.0e-221
WP_000985986.1|1743916_1744279_-	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	100.0	2.2e-56
WP_000175000.1|1744293_1744617_-	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_001285954.1|1744695_1744857_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1744869_1745133_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001097552.1|1745157_1745373_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_000642492.1|1745428_1745638_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1745627_1745771_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000435360.1|1745785_1746229_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000639923.1|1746241_1746484_-	DUF739 family protein	NA	A0A1X9H035	Staphylococcus_phage	100.0	1.6e-39
WP_001083975.1|1746647_1747364_+	helix-turn-helix domain-containing protein	NA	A0A1X9H038	Staphylococcus_phage	100.0	5.4e-131
WP_001557601.1|1747375_1748230_+	restriction endonuclease	NA	A0A1X9H037	Staphylococcus_phage	100.0	7.3e-151
WP_000109189.1|1748446_1748632_+	hypothetical protein	NA	U5U7D6	Staphylococcus_phage	100.0	2.3e-25
WP_000705240.1|1748702_1748885_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_001013104.1|1748920_1749067_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1749063_1749678_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_031795352.1|1749803_1751009_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	1.6e-220
1751103:1751120	attR	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
>prophage 128
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1765188	1765866	2819269		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1765188_1765866_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 129
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1781536	1785976	2819269		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549287.1|1781536_1785976_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	25.6	6.3e-28
>prophage 130
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1796579	1798241	2819269		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570070.1|1796579_1797239_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736784.1|1797290_1798241_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 131
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1807039	1808476	2819269		Pandoravirus(100.0%)	1	NA	NA
WP_000164003.1|1807039_1808476_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	1.1e-29
>prophage 132
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1812236	1816775	2819269		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1812236_1813976_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608818.1|1814235_1814910_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975351.1|1815053_1816775_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 133
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1826102	1827146	2819269		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645608.1|1826102_1827146_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	3.5e-14
>prophage 134
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1834360	1835890	2819269		Vibrio_phage(100.0%)	1	NA	NA
WP_000838205.1|1834360_1835890_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	50.7	4.5e-10
>prophage 135
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1844765	1846271	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008400.1|1844765_1846271_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 136
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1857378	1862737	2819269		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1857378_1859628_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1860215_1861184_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127990.1|1861180_1862737_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 137
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1872947	1875007	2819269		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818915.1|1872947_1874045_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166920.1|1874428_1875007_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.1	9.7e-14
>prophage 138
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1883556	1886744	2819269		Planktothrix_phage(33.33%)	3	NA	NA
WP_000067352.1|1883556_1885149_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
WP_000794565.1|1885658_1885856_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
WP_000960712.1|1886021_1886744_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.8	4.1e-22
>prophage 139
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1890616	1891297	2819269		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571407.1|1890616_1891297_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	2.9e-33
>prophage 140
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1908102	1909287	2819269		Klosneuvirus(100.0%)	1	NA	NA
WP_001084442.1|1908102_1909287_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	2.0e-34
>prophage 141
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1914123	1924407	2819269		Tupanvirus(50.0%)	3	NA	NA
WP_000605281.1|1914123_1921299_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.7	4.5e-68
WP_000826862.1|1921745_1922996_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706135.1|1923381_1924407_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.5	8.5e-29
>prophage 142
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1927943	1931232	2819269		Bacillus_virus(50.0%)	4	NA	NA
WP_000590854.1|1927943_1928684_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	2.5e-38
WP_000171919.1|1929025_1929538_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1929716_1929920_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013485.1|1930272_1931232_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 143
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1934573	1937058	2819269		Catovirus(50.0%)	2	NA	NA
WP_000723436.1|1934573_1935719_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	25.9	4.6e-23
WP_000779504.1|1935795_1937058_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	4.3e-22
>prophage 144
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1943893	1950458	2819269		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1943893_1945018_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028283.1|1945021_1946131_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1946143_1947172_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940790.1|1947161_1948985_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	5.2e-29
WP_000565304.1|1949004_1949769_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037332.1|1949771_1950458_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 145
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1954478	1955654	2819269		Clostridium_phage(100.0%)	1	NA	NA
WP_000469833.1|1954478_1955654_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.6	2.0e-29
>prophage 146
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1961093	1961867	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1961093_1961867_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 147
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1969898	1970498	2819269		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1969898_1970498_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 148
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1975435	1980532	2819269		Catovirus(50.0%)	6	NA	NA
WP_001793242.1|1975435_1976416_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
WP_001789407.1|1976485_1976608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000183771.1|1976751_1977528_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_160198891.1|1977937_1978366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015549.1|1978561_1979326_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223713.1|1979329_1980532_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 149
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	1988798	1993008	2819269		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570806.1|1988798_1989779_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.4	1.6e-40
WP_001045111.1|1990009_1991002_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924990.1|1991017_1992013_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136633.1|1992009_1993008_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.8	5.2e-15
>prophage 150
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2026139	2027204	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816133.1|2026139_2027204_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.8	7.7e-09
>prophage 151
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2034978	2044988	2819269		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2034978_2035779_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104165.1|2036167_2036956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|2036956_2038291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2038283_2040110_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2040122_2040824_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|2042026_2043310_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|2043587_2044988_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 152
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2051678	2060724	2819269	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_160198893.1|2051678_2052965_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	43.6	4.1e-89
WP_000177465.1|2053343_2054858_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.2e-90
WP_000449218.1|2055183_2055996_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819096.1|2056083_2058753_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	2.7e-119
WP_000255578.1|2058789_2060724_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 153
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2070824	2077381	2819269		Gordonia_phage(25.0%)	8	NA	NA
WP_160198895.1|2070824_2071664_+	nucleoid occlusion protein	NA	A0A1C9EHY8	Gordonia_phage	33.1	6.1e-09
WP_000491382.1|2072114_2072468_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2072535_2072931_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054128.1|2073190_2073760_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2073877_2074078_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_000672033.1|2074469_2074661_-	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_000143647.1|2074752_2076633_-	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000154162.1|2076622_2077381_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 154
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2091634	2093347	2819269		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138654.1|2091634_2093347_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 155
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2098975	2099989	2819269		Faustovirus(100.0%)	1	NA	NA
WP_000639184.1|2098975_2099989_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 156
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2112328	2113021	2819269		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185863.1|2112328_2113021_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 157
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2139119	2140979	2819269		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125628.1|2139119_2140979_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 158
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2166662	2168413	2819269		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143425.1|2166662_2167550_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2167657_2168413_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 159
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2171833	2172331	2819269		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2171833_2172331_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 160
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2177325	2179709	2819269		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071729.1|2177325_2179176_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	9.3e-236
WP_000173331.1|2179172_2179709_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 161
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2184587	2194701	2819269	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|2184587_2186297_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2186574_2186787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028775.1|2187066_2187510_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172341.1|2187703_2189302_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_001791980.1|2189361_2189691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2189986_2191483_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031409.1|2191676_2192567_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237629.1|2192689_2193106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000030072.1|2193363_2194701_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
>prophage 162
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2225034	2228824	2819269		Staphylococcus_phage(50.0%)	3	NA	NA
WP_000751263.1|2225034_2225736_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	5.2e-38
WP_000996739.1|2226011_2226500_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379821.1|2227012_2228824_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 163
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2237258	2241373	2819269		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161369.1|2237258_2238257_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	1.0e-34
WP_000076661.1|2238347_2238554_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024139.1|2238964_2241373_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	3.2e-127
>prophage 164
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2250614	2253650	2819269	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058993.1|2250614_2252720_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455988.1|2253128_2253650_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 165
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2260076	2266460	2819269		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062663.1|2260076_2261816_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473679.1|2262116_2264183_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206031.1|2264562_2264973_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|2265014_2265371_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228167.1|2265491_2266460_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	4.0e-12
>prophage 166
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2275750	2276743	2819269		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161545.1|2275750_2276743_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	3.7e-37
>prophage 167
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2286021	2286717	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000538625.1|2286021_2286717_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	3.0e-38
>prophage 168
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2305593	2306460	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|2305593_2306460_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 169
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2314261	2319457	2819269		Streptococcus_phage(50.0%)	3	NA	NA
WP_001835549.1|2314261_2316070_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.3	3.9e-93
WP_000755946.1|2316201_2316594_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088733.1|2316595_2319457_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	3.1e-28
>prophage 170
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2327299	2327995	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000217456.1|2327299_2327995_+	oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	4.3e-08
>prophage 171
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2332549	2333368	2819269		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824948.1|2332549_2333368_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	27.2	1.3e-08
>prophage 172
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2341420	2342978	2819269		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173871.1|2341420_2342236_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	8.8e-13
WP_000598772.1|2342228_2342978_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	9.0e-20
>prophage 173
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2350248	2354677	2819269		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923526.1|2350248_2350911_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.5e-21
WP_000072149.1|2350903_2351680_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026189.1|2352075_2353263_+	DHA family class C beta-lactamase	NA	NA	NA	NA	NA
WP_000700925.1|2353324_2354677_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
>prophage 174
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2358071	2359930	2819269		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948974.1|2358071_2359298_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2359294_2359930_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 175
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2377657	2383919	2819269		Bacillus_phage(66.67%)	5	NA	NA
WP_001176863.1|2377657_2378800_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779360.1|2379067_2379454_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482652.1|2379587_2379695_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064825.1|2380397_2382161_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.5e-36
WP_160198900.1|2382185_2383919_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
>prophage 176
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2387380	2393151	2819269		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971550.1|2387380_2388496_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
WP_000286875.1|2388506_2389199_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200956.1|2389209_2389677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000783428.1|2389728_2390706_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916704.1|2390707_2391655_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
WP_000594519.1|2392221_2393151_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 177
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2401163	2401895	2819269		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2401163_2401895_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 178
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2418544	2420104	2819269		Escherichia_phage(100.0%)	1	NA	NA
WP_000692648.1|2418544_2420104_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 179
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2441433	2442468	2819269		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|2441433_2442468_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 180
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2452313	2456209	2819269		Hokovirus(33.33%)	4	NA	NA
WP_000477338.1|2452313_2453687_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	2.3e-13
WP_000249497.1|2453679_2454354_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2454488_2455544_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229920.1|2455543_2456209_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.6e-36
>prophage 181
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2459948	2461157	2819269		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2459948_2461157_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 182
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2473247	2474147	2819269		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524830.1|2473247_2474147_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 183
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2481518	2481938	2819269		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|2481518_2481938_-	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 184
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2487630	2488512	2819269		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000235289.1|2487630_2488512_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 185
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2496390	2497026	2819269		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2496390_2497026_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 186
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2509969	2513949	2819269		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011447058.1|2509969_2510608_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_061713886.1|2510918_2512043_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	4.2e-13
WP_000417018.1|2512134_2513088_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	6.4e-31
WP_000737705.1|2513448_2513949_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 187
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2517866	2518670	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2517866_2518670_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 188
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2537650	2538256	2819269		Pithovirus(100.0%)	1	NA	NA
WP_000913024.1|2537650_2538256_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.1	4.3e-12
>prophage 189
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2550226	2553394	2819269		Leptospira_phage(100.0%)	1	NA	NA
WP_000592307.1|2550226_2553394_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	1.1e-61
>prophage 190
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2577077	2578744	2819269		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389658.1|2577077_2577887_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	1.7e-19
WP_000155386.1|2577883_2578744_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 191
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2587530	2595186	2819269		Enterobacteria_phage(33.33%)	7	NA	NA
WP_000411031.1|2587530_2588547_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.7	1.0e-18
WP_000655241.1|2589120_2589303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130149.1|2589796_2591461_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	8.0e-45
WP_000186134.1|2591497_2592202_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769705.1|2592585_2593011_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044362.1|2593305_2594121_+	hydrolase	NA	NA	NA	NA	NA
WP_001044441.1|2594331_2595186_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
>prophage 192
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2598568	2600878	2819269		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001015500.1|2598568_2599417_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_000875476.1|2599649_2599853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791678.1|2599939_2600101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001557494.1|2600137_2600878_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.9	1.5e-14
>prophage 193
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2607197	2608610	2819269		Pandoravirus(100.0%)	1	NA	NA
WP_000169224.1|2607197_2608610_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 194
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2612573	2614136	2819269		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2612573_2614136_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 195
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2624338	2625307	2819269		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2624338_2625307_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 196
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2641239	2642148	2819269		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2641239_2642148_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 197
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2645739	2653185	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160198903.1|2645739_2653185_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.5	3.9e-22
>prophage 198
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2659441	2662261	2819269		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334463.1|2659441_2661247_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.8	5.2e-98
WP_000908182.1|2661478_2662261_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.3e-09
>prophage 199
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2673443	2677274	2819269		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2673443_2673887_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2674007_2674718_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083318.1|2675031_2675694_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242311.1|2675972_2677274_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
>prophage 200
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2685214	2686825	2819269		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2685214_2686825_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 201
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2694628	2702378	2819269		Bacillus_virus(25.0%)	9	NA	NA
WP_000273358.1|2694628_2695228_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2695228_2696305_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248732.1|2696291_2697128_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_015445903.1|2697160_2698258_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.3	2.3e-40
WP_000697334.1|2698254_2698674_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654184.1|2698780_2699305_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2699331_2700570_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_117422336.1|2700597_2701227_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2701250_2702378_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 202
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2714302	2714698	2819269		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2714302_2714698_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 203
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2720969	2721617	2819269		Moumouvirus(100.0%)	1	NA	NA
WP_160198905.1|2720969_2721617_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	26.6	2.3e-08
>prophage 204
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2728817	2730338	2819269		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2728817_2730338_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 205
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2737528	2739556	2819269		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546611.1|2737528_2739556_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 206
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2744705	2748090	2819269		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2744705_2745068_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2745417_2746419_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2746537_2746864_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2746865_2747345_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041111.1|2747319_2748090_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	2.2e-21
>prophage 207
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2762208	2766932	2819269		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094583.1|2762208_2763738_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2763767_2764787_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2764908_2765163_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047811.1|2765162_2766932_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	7.0e-63
>prophage 208
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2770692	2784762	2819269	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_031875826.1|2770692_2771718_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	4.5e-62
WP_000106332.1|2772032_2773643_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	1.9e-19
WP_001792272.1|2773731_2773860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602057.1|2774004_2775933_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001283612.1|2776185_2776821_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072414299.1|2777175_2778204_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581076.1|2778263_2778488_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_160198906.1|2778695_2779955_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	30.5	3.7e-34
WP_000790331.1|2780137_2781088_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141432.1|2781236_2782721_+	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	26.5	2.3e-19
WP_001253312.1|2782717_2783677_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2784045_2784762_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 209
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2791943	2793920	2819269		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2791943_2792228_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2792303_2793920_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 210
NZ_CP047800	Staphylococcus aureus strain UP_296 chromosome, complete genome	2819269	2797868	2818799	2819269	integrase	Staphylococcus_phage(97.22%)	38	2800711:2800725	2810414:2810428
WP_000791411.1|2797868_2798924_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2798945_2799962_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2800711:2800725	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857180.1|2801080_2802118_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000427213.1|2802180_2802423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001558608.1|2802433_2803417_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000694772.1|2803516_2803699_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_000591749.1|2803902_2804244_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2804249_2805182_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2805197_2805911_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000854072.1|2806044_2806308_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2806323_2806539_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128909.1|2806527_2806857_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001148605.1|2806907_2807660_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148856.1|2807675_2807873_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_000762521.1|2807859_2808240_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2808294_2808618_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2808614_2808776_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2808870_2809173_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2809177_2809438_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2809446_2809710_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700554.1|2809718_2811662_+	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
2810414:2810428	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000180600.1|2811663_2812584_+	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_064135358.1|2812664_2813282_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000934759.1|2813282_2813753_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_000148333.1|2813782_2814676_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000338528.1|2814682_2814901_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401969.1|2814909_2815314_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000101279.1|2815326_2815698_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000111491.1|2815697_2815955_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000178987.1|2815951_2816200_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_001065108.1|2816214_2816460_+	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000185693.1|2816456_2816993_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001282077.1|2817029_2817275_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000195784.1|2817271_2817478_+	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_000595265.1|2817474_2817624_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001557462.1|2817623_2817824_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2817851_2818268_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|2818499_2818799_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
