The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	0	24769	2768425	protease,portal,tail,holin,head,capsid,terminase	Staphylococcus_phage(100.0%)	29	NA	NA
WP_160199850.1|0_1695_+|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000644965.1|1669_1909_+	membrane protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
WP_011447040.1|1974_3165_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000032525.1|3157_3742_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000849950.1|3829_5077_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_001252099.1|5112_5271_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177486.1|5279_5612_+|head,tail	phage head-tail adapter protein	head,tail	A0A1W6JPZ6	Staphylococcus_phage	100.0	2.1e-58
WP_000975314.1|5598_5934_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_000501244.1|5933_6311_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000611452.1|6307_6688_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000570652.1|6688_7642_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000442601.1|7706_8153_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000570353.1|8212_8335_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_001133528.1|8390_13043_+|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	100.0	0.0e+00
WP_029549971.1|13042_14533_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	99.8	8.2e-299
WP_160199939.1|14551_18334_+	hypothetical protein	NA	A0A1P8L6B8	Staphylococcus_phage	99.8	0.0e+00
WP_001153681.1|18323_18476_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18522_18810_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|18867_19164_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|19313_19490_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19542_19650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19701_19956_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19967_20723_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920037.1|20913_21405_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	100.0	3.6e-86
WP_020444758.1|21931_22390_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727643.1|22484_22934_-	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000702262.1|23615_23966_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24018_24279_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24589_24769_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	124799	234239	2768425	tRNA,transposase,protease	Staphylococcus_phage(93.85%)	105	NA	NA
WP_001789049.1|124799_125942_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|125946_126417_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|126575_127175_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|127199_127352_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|128182_128578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116229.1|128773_130159_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|130619_131441_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|131603_132716_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|132737_133361_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|133716_134181_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992524.1|134359_135484_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|135552_135897_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|136389_136488_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|136778_137975_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584629.1|137964_140901_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|140897_141839_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|141959_142922_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|143126_143684_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|144416_144782_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|144923_145346_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216873.1|145479_146220_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	2.0e-24
WP_000551840.1|146212_147436_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737978.1|147559_148063_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|148225_148336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|148325_149363_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|149420_150344_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167545.1|150367_151768_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|152088_152643_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_129409671.1|153993_154776_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.4e-31
WP_000821658.1|155056_155776_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|155810_156539_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_000764689.1|156692_157463_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	43.2	1.4e-44
WP_001236364.1|157501_158257_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.0	1.0e-39
WP_160199854.1|158539_159316_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848315.1|159867_160644_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|160664_160901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001253432.1|160978_161473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792814.1|162000_162129_-|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	66.7	6.6e-08
WP_000209099.1|162306_163095_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.0	1.3e-138
WP_000473596.1|164456_165392_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|165393_166377_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000416758.1|166799_166943_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	78.7	2.0e-13
WP_000416756.1|167678_167822_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_160199855.1|167886_170880_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.1	0.0e+00
WP_000566594.1|170872_172117_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.5e-237
WP_000504439.1|172132_172651_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_160199856.1|172660_174034_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	99.8	8.4e-258
WP_001096791.1|174056_174749_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|174745_175507_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|175503_176202_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_160199857.1|176675_177242_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	98.9	2.8e-98
WP_025174267.1|178204_178912_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	3.9e-126
WP_001039443.1|179036_179759_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	1.9e-131
WP_001038869.1|179816_180536_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	6.0e-130
WP_001038694.1|180656_181376_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	1.2e-127
WP_102957303.1|181324_181432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|181533_182250_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038689.1|182399_183119_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	3.2e-131
WP_000028583.1|183484_185041_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.1	3.0e-288
WP_047230715.1|185033_186263_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.2	5.8e-133
WP_001792025.1|187338_187440_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|187562_187658_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414215.1|189013_189586_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627537.1|189686_190028_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000669026.1|190068_190695_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	96.2	3.5e-94
WP_000070641.1|190769_191765_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	95.2	7.9e-72
WP_072470537.1|191845_192496_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.7	1.8e-32
WP_072470673.1|192798_193254_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.2e-78
WP_000348370.1|193412_194891_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	6.9e-282
WP_000778534.1|194895_195897_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	7.7e-184
WP_000718107.1|195893_196151_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|196216_196690_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_072470674.1|196694_197441_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	8.3e-143
WP_000109906.1|197818_199411_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_160199858.1|199781_200975_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	2.8e-217
WP_000366155.1|201099_202008_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000453312.1|202219_203053_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	2.1e-158
WP_000623479.1|203436_203790_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	92.3	8.2e-16
WP_001200540.1|203786_204152_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	4.8e-59
WP_000091442.1|204407_204710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|204969_205683_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|206122_206758_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030463.1|207053_207497_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	100.0	3.7e-58
WP_001153742.1|207483_207927_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|208039_208510_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|208708_208933_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|209208_210063_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|210357_210753_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989120.1|210770_212063_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
WP_000221185.1|212062_212377_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	4.4e-53
WP_001261669.1|212900_214403_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_025174259.1|214895_215927_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	2.0e-195
WP_000493888.1|215933_216566_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	100.0	3.4e-113
WP_001159033.1|216576_217758_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	5.1e-227
WP_001008551.1|217770_218235_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|218356_219358_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001790712.1|219469_219589_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|219591_220419_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|220989_221391_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|221510_222074_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|222070_223024_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|223133_224315_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108734.1|224605_227020_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_000836465.1|227041_227353_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001050510.1|227678_234239_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	96.0	1.3e-303
>prophage 3
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	358404	367447	2768425	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005768.1|358404_359409_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|359410_360436_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|360458_361598_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|361616_361877_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|362151_364431_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_031918693.1|364633_366907_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.1	1.1e-63
WP_000364545.1|366928_367447_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	6.2e-28
>prophage 4
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	435167	443479	2768425	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217262.1|435167_436967_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	1.0e-53
WP_001283055.1|437190_438297_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|438427_439105_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683930.1|439107_440208_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|440321_441668_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|441677_442568_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|442693_443479_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	980953	989426	2768425		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|980953_981520_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030821.1|981522_982551_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	2.9e-61
WP_000483713.1|982543_984028_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032746.1|984006_986196_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_000666799.1|986188_986860_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|986861_987125_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|987124_987829_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010406.1|987832_988957_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861574.1|988943_989426_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 6
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	1009400	1042708	2768425	bacteriocin,transposase,protease	Enterococcus_phage(16.67%)	36	NA	NA
WP_001089097.1|1009400_1010582_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|1010619_1010949_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1011187_1012009_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150199.1|1012001_1012805_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_160199883.1|1012791_1014465_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_072353880.1|1014451_1015663_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_001791731.1|1015739_1015844_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070966.1|1015994_1016933_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|1016984_1017536_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|1017625_1017916_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_072353879.1|1017979_1018111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081352.1|1018156_1019116_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1019603_1019960_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1020048_1020186_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1020326_1020617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1020704_1021346_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
WP_000668622.1|1021342_1021663_-	YxeA family protein	NA	NA	NA	NA	NA
WP_160199884.1|1021665_1023630_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_072470685.1|1023673_1023946_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|1023955_1024057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|1024972_1025575_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1025589_1025766_-	YkvS family protein	NA	NA	NA	NA	NA
WP_160199885.1|1025964_1026951_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1027031_1027250_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1027459_1028029_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414178.1|1028515_1030027_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021865.1|1030165_1031524_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_072470629.1|1031540_1033865_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000928411.1|1034083_1034887_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049957.1|1035188_1036751_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_001795833.1|1036750_1037011_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000340119.1|1036991_1038476_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_000258650.1|1038908_1040084_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001794241.1|1040043_1041252_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600390.1|1041364_1041874_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251964.1|1042531_1042708_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.9	4.5e-07
>prophage 7
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	1235107	1249395	2768425		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616862.1|1235107_1235869_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	3.8e-18
WP_001245574.1|1235865_1236822_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1236808_1237780_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1237818_1237974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562501.1|1238154_1239126_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	5.5e-171
WP_000855505.1|1239243_1241349_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1241311_1241710_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068504.1|1242510_1243377_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1243396_1243897_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193757.1|1244237_1245743_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031918684.1|1245822_1245924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1246014_1246932_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197271.1|1247499_1248042_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1248336_1249395_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
>prophage 8
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	1261366	1269185	2768425		Pandoravirus(16.67%)	10	NA	NA
WP_160199892.1|1261366_1262518_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.7e-23
WP_000604514.1|1262501_1263095_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1263444_1264113_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1264114_1264534_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1264537_1265251_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|1265349_1265934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093556.1|1266213_1266654_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1266995_1267469_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1267443_1268130_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1268129_1269185_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 9
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	1630487	1649224	2768425	coat,integrase,terminase	Staphylococcus_phage(86.36%)	29	1632279:1632293	1647035:1647049
WP_001792762.1|1630487_1630628_+	hypothetical protein	NA	Q4ZE80	Staphylococcus_phage	66.7	5.9e-10
WP_001822249.1|1631084_1632023_+	Abi family protein	NA	NA	NA	NA	NA
1632279:1632293	attL	AAATTATATATTATT	NA	NA	NA	NA
WP_000877056.1|1632568_1632826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001035617.1|1633357_1633915_+	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	74.9	9.2e-70
WP_000278086.1|1633992_1634793_-	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	46.5	1.9e-52
WP_160199905.1|1635100_1635670_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.4	1.0e-100
WP_000358778.1|1635666_1636008_-	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	100.0	1.7e-58
WP_160199906.1|1636010_1636538_-|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	95.4	6.6e-86
WP_000214169.1|1636590_1637244_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	100.0	9.0e-117
WP_001190614.1|1637274_1637616_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_001019288.1|1638151_1638793_-	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	93.0	4.7e-110
WP_001804819.1|1638794_1639058_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001039165.1|1639059_1639422_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	95.8	4.6e-62
WP_031928070.1|1639700_1641170_-	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	95.9	1.6e-278
WP_001002727.1|1641186_1642056_-	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	94.5	2.8e-158
WP_160199907.1|1642121_1642442_-	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	55.7	3.6e-18
WP_000695070.1|1642442_1642826_-	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	97.6	2.0e-63
WP_001231389.1|1642827_1643031_-	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	94.0	1.1e-28
WP_072470692.1|1642997_1643171_-	pathogenicity island protein	NA	NA	NA	NA	NA
WP_001138301.1|1643182_1643455_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	93.3	2.1e-43
WP_000551774.1|1643455_1643668_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	71.4	3.0e-21
WP_001033058.1|1643706_1643907_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_050436923.1|1644013_1644937_+	helix-turn-helix transcriptional regulator	NA	Q4ZC20	Staphylococcus_virus	43.1	2.2e-07
WP_000270125.1|1644962_1646180_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	98.0	2.1e-220
WP_000357932.1|1646662_1647493_+	KilA-N domain-containing protein	NA	Q4ZC41	Staphylococcus_virus	72.6	3.4e-113
1647035:1647049	attR	AAATTATATATTATT	NA	NA	NA	NA
WP_000897044.1|1647674_1647917_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000934799.1|1647968_1648472_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1648492_1648789_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1649032_1649224_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
>prophage 10
NZ_CP047852	Staphylococcus aureus strain UP_274 chromosome, complete genome	2768425	2747333	2768423	2768425	integrase,terminase	Staphylococcus_phage(100.0%)	43	2735913:2735929	2759355:2759371
2735913:2735929	attL	GTTTAATAAATGAAAAA	NA	NA	NA	NA
WP_000791404.1|2747333_2748386_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000595401.1|2748407_2749424_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000857176.1|2750911_2751949_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000191459.1|2752056_2752671_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001013104.1|2752667_2752814_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705243.1|2752849_2753032_-	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_001208482.1|2753231_2754002_-	helix-turn-helix domain-containing protein	NA	A0A1P8L6G7	Staphylococcus_phage	100.0	6.2e-141
WP_000338186.1|2754160_2754385_+	DUF739 family protein	NA	A7TW90	Staphylococcus_phage	100.0	4.5e-36
WP_000435341.1|2754402_2754663_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_000351243.1|2754686_2755226_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	100.0	1.7e-97
WP_001148337.1|2755282_2756032_+	antirepressor	NA	Q8SDM9	Staphylococcus_phage	99.6	4.4e-136
WP_001148855.1|2756047_2756245_+	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_000939496.1|2756275_2756416_+	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_000275058.1|2756430_2757063_-	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_001120197.1|2757121_2757442_+	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000066020.1|2757438_2757600_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291488.1|2757692_2757953_+	DUF1108 family protein	NA	A0A2I6PDH1	Staphylococcus_phage	100.0	2.6e-43
WP_000815404.1|2757962_2758184_+	DUF2483 domain-containing protein	NA	A0A1W6JQ25	Staphylococcus_phage	100.0	9.3e-34
WP_000137070.1|2758176_2758956_+	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	100.0	3.3e-142
WP_000704705.1|2758986_2759538_+	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
2759355:2759371	attR	TTTTTCATTTATTAAAC	NA	NA	NA	NA
WP_001199416.1|2759550_2760222_+	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
WP_000414755.1|2760360_2760642_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000190253.1|2760707_2761478_+	hypothetical protein	NA	A0A1W6JQ00	Staphylococcus_phage	100.0	6.4e-122
WP_000803062.1|2761487_2762267_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256589.1|2762260_2762419_+	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_001123674.1|2762431_2762653_+	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	100.0	1.7e-35
WP_000049804.1|2762663_2763068_+	DUF1064 domain-containing protein	NA	A0A1W6JPX0	Staphylococcus_phage	100.0	3.6e-68
WP_001187234.1|2763072_2763258_+	DUF3113 family protein	NA	A0A1W6JPY2	Staphylococcus_phage	100.0	8.3e-28
WP_001029545.1|2763258_2763630_+	hypothetical protein	NA	A0A1W6JPY5	Staphylococcus_phage	100.0	7.5e-52
WP_001126839.1|2763630_2763879_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_000982695.1|2763942_2764290_+	hypothetical protein	NA	A0A1W6JPZ1	Staphylococcus_phage	100.0	5.9e-59
WP_000219085.1|2764286_2764676_+	acetyltransferase	NA	A0A1W6JPV7	Staphylococcus_phage	100.0	3.5e-68
WP_001065078.1|2764668_2764923_+	DUF1024 family protein	NA	A0A1W6JQ06	Staphylococcus_phage	100.0	1.9e-38
WP_001795925.1|2764885_2765080_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	95.1	5.9e-24
WP_001066448.1|2765072_2765609_+	hypothetical protein	NA	A0A1W6JQ21	Staphylococcus_phage	100.0	9.4e-96
WP_001209216.1|2765645_2765819_+	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
WP_000195759.1|2765835_2766042_+	DUF1381 domain-containing protein	NA	A0A1W6JPY0	Staphylococcus_phage	100.0	1.9e-20
WP_000595265.1|2766038_2766188_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001794311.1|2766187_2766388_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	100.0	1.4e-28
WP_000282749.1|2766410_2766899_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	3.8e-72
WP_000406194.1|2767013_2767466_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A1W6JQ01	Staphylococcus_phage	100.0	3.6e-80
WP_000817289.1|2767481_2767826_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	100.0	4.2e-65
WP_000919026.1|2767955_2768423_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
