assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	1	410980-411064	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	411006-411038|411006-411038	NZ_CP047804.1_681007-680975|NZ_CP047804.1_1241140-1241172	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047804.1_401609_402179_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047804.1_402168_402753_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047804.1_402753_403107_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047804.1_403109_403826_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047804.1_403865_404552_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047804.1_404643_405105_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047804.1_405163_407311_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047804.1_407367_408342_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047804.1_408386_408638_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047804.1_408983_410807_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047804.1_411372_412497_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047804.1_412597_413575_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047804.1_413606_414233_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047804.1_414301_416134_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047804.1_416269_417409_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047804.1_417412_418351_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047804.1_418352_419105_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047804.1_419111_420458_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047804.1_420750_420927_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047804.1_421170_421854_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	2	1197911-1197992	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1197935-1197968	NZ_CP047804.1_681008-680975	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047804.1_1198975_1199089_-	NA|414aa|up_9|NZ_CP047804.1_1188394_1189636_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047804.1_1189750_1191058_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047804.1_1191155_1191917_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047804.1_1192244_1193096_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047804.1_1193329_1193524_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047804.1_1193877_1194699_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047804.1_1194716_1195412_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047804.1_1195404_1196430_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047804.1_1196679_1196976_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047804.1_1196968_1197355_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047804.1_1198095_1198974_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047804.1_1198975_1199089_-	NA	NA|127aa|down_2|NZ_CP047804.1_1199152_1199533_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047804.1_1199690_1200047_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047804.1_1200190_1200511_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047804.1_1200661_1201201_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047804.1_1201283_1202000_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047804.1_1202147_1202570_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047804.1_1202968_1203463_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047804.1_1203617_1204235_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	3	1246652-1246730	3	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	1246676-1246706|1246676-1246706|1246676-1246706	NZ_CP047804.1_1757992-1757962|NZ_CP047804.1_376552-376582|NZ_CP047804.1_1758047-1758017	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047804.1_1254208_1254316_-,NA|35aa|down_7|NZ_CP047804.1_1255748_1255853_-	NA|301aa|up_9|NZ_CP047804.1_1235533_1236436_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047804.1_1236678_1237266_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047804.1_1237829_1238774_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047804.1_1238884_1239880_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047804.1_1239876_1240788_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047804.1_1241673_1242609_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047804.1_1242675_1244115_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047804.1_1244122_1244608_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047804.1_1244615_1245455_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047804.1_1245460_1246393_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047804.1_1247056_1249903_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047804.1_1249910_1251896_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047804.1_1252164_1252401_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047804.1_1252397_1253048_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047804.1_1253221_1254061_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047804.1_1254208_1254316_-	NA	NA|370aa|down_6|NZ_CP047804.1_1254469_1255580_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047804.1_1255748_1255853_-	NA	NA|844aa|down_8|NZ_CP047804.1_1255894_1258426_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047804.1_1258839_1259412_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	4	1642818-1642920	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047804.1_1634436_1634973_+,NA|221aa|up_1|NZ_CP047804.1_1641064_1641727_+,NA|33aa|down_0|NZ_CP047804.1_1643595_1643694_-,NA|128aa|down_6|NZ_CP047804.1_1649941_1650325_+,NA|70aa|down_8|NZ_CP047804.1_1651149_1651359_+	NA|91aa|up_9|NZ_CP047804.1_1632669_1632942_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047804.1_1633340_1634045_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047804.1_1634436_1634973_+	NA	NA|514aa|up_6|NZ_CP047804.1_1635085_1636627_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047804.1_1636651_1638118_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047804.1_1638155_1639424_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047804.1_1639423_1640002_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047804.1_1640514_1640922_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047804.1_1641064_1641727_+	NA	NA|319aa|up_0|NZ_CP047804.1_1641844_1642801_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP047804.1_1643595_1643694_-	NA	NA|463aa|down_1|NZ_CP047804.1_1643778_1645167_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047804.1_1645246_1646002_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047804.1_1646493_1647063_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047804.1_1647078_1648602_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047804.1_1649045_1649672_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047804.1_1649941_1650325_+	NA	NA|194aa|down_7|NZ_CP047804.1_1650390_1650972_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047804.1_1651149_1651359_+	NA	NA|84aa|down_9|NZ_CP047804.1_1651397_1651649_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	5	2307707-2307840	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2307724-2307769|2307787-2307823	NZ_CP047804.1_2304200-2304245|NZ_CP047804.1_2304263-2304299	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047804.1_2301376_2301577_+,NA|78aa|down_4|NZ_CP047804.1_2316156_2316390_+,NA|103aa|down_5|NZ_CP047804.1_2316497_2316806_-,NA|89aa|down_6|NZ_CP047804.1_2316949_2317216_-	NA|426aa|up_9|NZ_CP047804.1_2291373_2292651_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047804.1_2293127_2294951_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047804.1_2295089_2295506_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047804.1_2295736_2296429_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047804.1_2296593_2297358_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047804.1_2297510_2298191_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047804.1_2298214_2299768_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047804.1_2299884_2301243_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047804.1_2301376_2301577_+	NA	NA|997aa|up_0|NZ_CP047804.1_2301711_2304702_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047804.1_2308448_2309315_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047804.1_2309525_2310269_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047804.1_2310592_2310949_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|359aa|down_3|NZ_CP047804.1_2314983_2316060_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_4|NZ_CP047804.1_2316156_2316390_+	NA	NA|103aa|down_5|NZ_CP047804.1_2316497_2316806_-	NA	NA|89aa|down_6|NZ_CP047804.1_2316949_2317216_-	NA	NA|603aa|down_7|NZ_CP047804.1_2317499_2319308_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_8|NZ_CP047804.1_2319439_2319832_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_9|NZ_CP047804.1_2319833_2322695_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	6	2383253-2383331	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	4	2383276-2383308|2383276-2383308|2383276-2383308|2383276-2383308	NZ_CP047804.1_1233841-1233873|NZ_CP047804.1_2776714-2776682|NZ_CP047804.1_1233897-1233929|NZ_CP047804.1_1233953-1233985	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047804.1_2380177_2380837_-,NA|36aa|up_0|NZ_CP047804.1_2382826_2382934_+,NA	NA|693aa|up_9|NZ_CP047804.1_2372639_2374718_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_8|NZ_CP047804.1_2374855_2376265_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|269aa|up_7|NZ_CP047804.1_2376550_2377357_+	TIGR03729, acc_ester, putative phosphoesterase	NA|219aa|up_6|NZ_CP047804.1_2377419_2378076_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047804.1_2378188_2378662_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047804.1_2378784_2379996_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047804.1_2380177_2380837_-	NA	NA|381aa|up_2|NZ_CP047804.1_2380896_2382039_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047804.1_2382306_2382693_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047804.1_2382826_2382934_+	NA	NA|588aa|down_0|NZ_CP047804.1_2383636_2385400_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047804.1_2385424_2387158_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047804.1_2387610_2388297_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047804.1_2388274_2389633_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047804.1_2389634_2390642_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047804.1_2390619_2391735_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047804.1_2391745_2392438_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047804.1_2392448_2392916_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047804.1_2392967_2393945_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047804.1_2393946_2394894_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	7	2548040-2548120	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	14	2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095|2548065-2548095	NZ_CP047804.1_1233901-1233931|NZ_CP047804.1_1233957-1233987|NZ_CP047804.1_396400-396370|NZ_CP047804.1_681049-681019|NZ_CP047804.1_887150-887120|NZ_CP047804.1_1414386-1414356|NZ_CP047804.1_1681657-1681627|NZ_CP047804.1_80559-80589|NZ_CP047804.1_592477-592507|NZ_CP047804.1_592593-592623|NZ_CP047804.1_1031773-1031803|NZ_CP047804.1_1233845-1233875|NZ_CP047804.1_1979769-1979799|NZ_CP047804.1_2558866-2558896	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047804.1_2548161_2548347_-,NA|84aa|down_5|NZ_CP047804.1_2551486_2551738_-,NA|106aa|down_8|NZ_CP047804.1_2556859_2557177_-,NA|55aa|down_9|NZ_CP047804.1_2557421_2557586_-	NA|202aa|up_9|NZ_CP047804.1_2540932_2541538_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047804.1_2541707_2542712_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047804.1_2542742_2543249_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047804.1_2543250_2543745_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047804.1_2543807_2545067_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047804.1_2545063_2545549_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047804.1_2545562_2546009_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047804.1_2546014_2546248_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047804.1_2546254_2546854_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047804.1_2546873_2547896_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047804.1_2548161_2548347_-	NA	NA|117aa|down_1|NZ_CP047804.1_2548472_2548823_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047804.1_2548924_2550136_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047804.1_2550128_2550569_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047804.1_2550730_2551495_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047804.1_2551486_2551738_-	NA	NA|422aa|down_6|NZ_CP047804.1_2552126_2553392_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047804.1_2553508_2556676_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047804.1_2556859_2557177_-	NA	NA|55aa|down_9|NZ_CP047804.1_2557421_2557586_-	NA
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	8	2659117-2659202	7	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047804.1_2670164_2670323_-,NA|35aa|down_8|NZ_CP047804.1_2671002_2671107_+,NA|364aa|down_9|NZ_CP047804.1_2671539_2672631_-	NA|228aa|up_9|NZ_CP047804.1_2634043_2634727_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|448aa|up_8|NZ_CP047804.1_2634903_2636247_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_7|NZ_CP047804.1_2636345_2636819_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_6|NZ_CP047804.1_2637141_2638584_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_5|NZ_CP047804.1_2638731_2639796_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|440aa|up_4|NZ_CP047804.1_2646086_2647406_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|303aa|up_3|NZ_CP047804.1_2647560_2648469_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047804.1_2648657_2649467_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047804.1_2649468_2650401_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047804.1_2650427_2651783_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047804.1_2659824_2660931_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047804.1_2660930_2661365_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047804.1_2661376_2663509_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047804.1_2663543_2665082_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047804.1_2665762_2667568_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047804.1_2667799_2668582_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047804.1_2668649_2669507_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047804.1_2670164_2670323_-	NA	NA|35aa|down_8|NZ_CP047804.1_2671002_2671107_+	NA	NA|364aa|down_9|NZ_CP047804.1_2671539_2672631_-	NA
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	9	2671442-2671523	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047804.1_2670164_2670323_-,NA|35aa|up_0|NZ_CP047804.1_2671002_2671107_+,NA|364aa|down_0|NZ_CP047804.1_2671539_2672631_-,NA|77aa|down_5|NZ_CP047804.1_2676417_2676648_+	NA|2482aa|up_9|NZ_CP047804.1_2652060_2659506_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047804.1_2659824_2660931_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047804.1_2660930_2661365_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047804.1_2661376_2663509_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047804.1_2663543_2665082_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047804.1_2665762_2667568_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047804.1_2667799_2668582_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047804.1_2668649_2669507_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047804.1_2670164_2670323_-	NA	NA|35aa|up_0|NZ_CP047804.1_2671002_2671107_+	NA	NA|364aa|down_0|NZ_CP047804.1_2671539_2672631_-	NA	NA|326aa|down_1|NZ_CP047804.1_2672896_2673874_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047804.1_2673875_2674196_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047804.1_2674347_2675013_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047804.1_2675448_2676387_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047804.1_2676417_2676648_+	NA	NA|458aa|down_6|NZ_CP047804.1_2677319_2678693_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047804.1_2679149_2679563_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047804.1_2679762_2680206_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047804.1_2680326_2681037_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009912995.1_ASM991299v1	NZ_CP047804	Staphylococcus aureus strain UP_774 chromosome, complete genome	10	2800699-2800780	9	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	2800723-2800756|2800723-2800756|2800723-2800756|2800723-2800756|2800723-2800756	NZ_CP047804.1_892751-892718|NZ_CP047804.1_1246698-1246731|NZ_CP047804.1_284329-284296|NZ_CP047804.1_676607-676640|NZ_CP047804.1_2109419-2109452	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|81aa|down_4|NZ_CP047804.1_2806971_2807214_-,NA|61aa|down_6|NZ_CP047804.1_2808307_2808490_-,NA|114aa|down_7|NZ_CP047804.1_2808693_2809035_-	NA|48aa|up_9|NZ_CP047804.1_2790883_2791027_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP047804.1_2791029_2791593_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP047804.1_2791828_2791963_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP047804.1_2792562_2793348_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP047804.1_2793708_2794335_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP047804.1_2794531_2795791_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP047804.1_2795815_2796559_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP047804.1_2796733_2797018_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP047804.1_2797093_2798710_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP047804.1_2799249_2800557_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP047804.1_2801000_2802224_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP047804.1_2802659_2803715_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP047804.1_2803736_2804753_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP047804.1_2805871_2806909_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_4|NZ_CP047804.1_2806971_2807214_-	NA	NA|328aa|down_5|NZ_CP047804.1_2807224_2808208_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|61aa|down_6|NZ_CP047804.1_2808307_2808490_-	NA	NA|114aa|down_7|NZ_CP047804.1_2808693_2809035_-	NA	DEDDh|311aa|down_8|NZ_CP047804.1_2809040_2809973_-	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|238aa|down_9|NZ_CP047804.1_2809988_2810702_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
