The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	0	24120	2840057	head,portal,tail,terminase,holin,protease,capsid	Staphylococcus_phage(100.0%)	28	NA	NA
WP_000133304.1|0_1695_+|terminase	phage terminase large subunit	terminase	D2JLE4	Staphylococcus_phage	100.0	0.0e+00
WP_000644965.1|1669_1909_+	membrane protein	NA	A7TWC1	Staphylococcus_phage	100.0	7.0e-35
WP_011447040.1|1974_3165_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	100.0	1.8e-224
WP_000032525.1|3157_3742_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	100.0	9.8e-107
WP_000849950.1|3829_5077_+|capsid	phage major capsid protein	capsid	A7TWC4	Staphylococcus_phage	100.0	5.0e-209
WP_001252099.1|5112_5271_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177483.1|5279_5612_+|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	100.0	2.1e-58
WP_000975314.1|5598_5934_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_000501244.1|5933_6311_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	100.0	1.1e-61
WP_000611452.1|6307_6688_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	100.0	5.8e-68
WP_000570652.1|6688_7642_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000442602.1|7706_8153_+	hypothetical protein	NA	O80053	Staphylococcus_phage	96.6	1.9e-73
WP_000570353.1|8212_8335_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_042908137.1|8390_13040_+|tail	phage tail tape measure protein	tail	A0A1V0E5H1	Staphylococcus_phage	98.2	0.0e+00
WP_001154327.1|13039_14530_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
WP_031927805.1|14545_18331_+	phage minor structural protein	NA	D2JLF9	Staphylococcus_phage	99.4	0.0e+00
WP_000654329.1|18320_18473_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_001040255.1|18519_18807_+	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000340977.1|18862_19237_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_072357969.1|19379_19556_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	96.6	6.5e-22
WP_031762631.1|19608_19716_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19767_20022_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20033_20789_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|20979_21471_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_001110821.1|22160_22457_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	94.9	1.1e-48
WP_000702263.1|22967_23318_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23369_23630_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669791.1|23940_24120_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
>prophage 2
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	144395	266846	2840057	head,portal,transposase,plate,tRNA,tail,terminase,integrase,holin,protease,capsid	Staphylococcus_phage(87.93%)	141	135224:135241	233277:233294
135224:135241	attL	TAAAAAAGATGAATTATA	NA	NA	NA	NA
WP_001807150.1|144395_145715_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_047213579.1|145804_146335_-	signal transduction protein TRAP	NA	NA	NA	NA	NA
WP_000233535.1|146596_147634_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|147691_148615_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167553.1|148638_150039_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132893.1|150358_150913_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000146088.1|152205_153255_-|integrase	site-specific integrase	integrase	A0A2H4JB53	uncultured_Caudovirales_phage	90.3	5.2e-183
WP_031790084.1|153316_153832_-	hypothetical protein	NA	A9CR44	Staphylococcus_phage	94.2	6.3e-41
WP_000525009.1|153849_154311_-	hypothetical protein	NA	W5R9J0	Staphylococcus_phage	100.0	1.2e-83
WP_001260487.1|154323_154647_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000272859.1|154810_155059_+	helix-turn-helix transcriptional regulator	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
WP_000435360.1|155071_155515_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000939495.1|155529_155670_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|155662_155872_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_031925041.1|155928_156642_+	antirepressor	NA	A0A059T7N7	Staphylococcus_phage	98.7	2.1e-127
WP_000455728.1|156654_156864_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
WP_031928972.1|156877_157039_+	DUF1270 family protein	NA	O80077	Staphylococcus_phage	98.1	7.2e-20
WP_000291089.1|157132_157393_+	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	100.0	1.2e-43
WP_000999048.1|157405_157942_+	hypothetical protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_000840496.1|157942_158593_+	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001099010.1|158589_159033_+	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	95.9	3.2e-73
WP_031928974.1|159044_159719_+	phi PV83 orf 19-like protein	NA	A1KX69	Staphylococcus_virus	99.6	1.5e-130
WP_000371250.1|159824_160682_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_000190223.1|160746_161517_+	hypothetical protein	NA	A0A0N6WMQ8	Staphylococcus_phage	100.0	1.8e-116
WP_000803062.1|161526_162306_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256597.1|162299_162458_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123684.1|162470_162692_+	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_015967236.1|162701_163106_+	DUF1064 domain-containing protein	NA	Q9G020	Staphylococcus_virus	100.0	9.6e-69
WP_031793838.1|163110_163296_+	DUF3113 family protein	NA	M1SNY0	Staphylococcus_phage	98.4	2.1e-26
WP_114665714.1|163296_163665_+	hypothetical protein	NA	Q9B0F5	Staphylococcus_virus	95.1	2.2e-51
WP_000132292.1|163668_163911_+	hypothetical protein	NA	A0A2K9VBX5	Staphylococcus_phage	100.0	1.1e-40
WP_024937270.1|163924_164329_+	hypothetical protein	NA	A0A0E3T8H9	Staphylococcus_phage	99.2	4.6e-71
WP_000979209.1|164325_164673_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000982708.1|164791_165241_+	hypothetical protein	NA	A0A2I6PDH2	Staphylococcus_phage	100.0	9.3e-81
WP_001105620.1|165237_165522_+	hypothetical protein	NA	A0A2I6PDI3	Staphylococcus_phage	100.0	9.4e-47
WP_031928976.1|165514_165763_+	DUF1024 family protein	NA	Q9MBR1	Staphylococcus_prophage	96.3	1.0e-36
WP_000185706.1|165755_166286_+	hypothetical protein	NA	I1W653	Staphylococcus_phage	100.0	9.2e-96
WP_001613442.1|166322_166610_+	DUF1381 domain-containing protein	NA	Q4ZAB6	Staphylococcus_virus	96.8	4.4e-44
WP_000608276.1|166602_166839_+	hypothetical protein	NA	A0A2I6PEM4	Staphylococcus_phage	94.9	2.0e-34
WP_160199080.1|166828_167215_+	hypothetical protein	NA	A0A2I6PDC1	Staphylococcus_phage	96.9	3.7e-62
WP_160199081.1|167214_167388_+	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	7.1e-21
WP_000286968.1|167388_167790_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_072328463.1|168143_168638_+|terminase	terminase	terminase	A0A2I6PCU5	Staphylococcus_phage	100.0	1.3e-83
WP_160199082.1|168630_169839_+|terminase	PBSX family phage terminase large subunit	terminase	R4IG95	Staphylococcus_phage	99.8	2.3e-235
WP_001159668.1|169792_171271_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	3.3e-284
WP_049881759.1|171209_172193_+	hypothetical protein	NA	A0A0N7E0U6	Staphylococcus_phage	96.5	6.8e-169
WP_000346033.1|172194_172401_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000366932.1|172505_173102_+	hypothetical protein	NA	R4IG73	Staphylococcus_phage	100.0	5.6e-73
WP_001135558.1|173122_173947_+|capsid	N4-gp56 family major capsid protein	capsid	R4IH32	Staphylococcus_phage	100.0	5.6e-148
WP_000278799.1|173963_174290_+	hypothetical protein	NA	A0A0E3TAL3	Staphylococcus_phage	100.0	4.3e-51
WP_000338935.1|174289_174604_+|head,tail	phage head-tail adapter protein	head,tail	R4IFL8	Staphylococcus_phage	100.0	4.0e-54
WP_000482986.1|174596_174932_+|head	phage head closure protein	head	A0A2H4PQL0	Staphylococcus_phage	100.0	3.0e-60
WP_001151335.1|174918_175332_+	HK97 gp10 family phage protein	NA	R4IG77	Staphylococcus_phage	100.0	2.0e-77
WP_000270196.1|175344_175782_+	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
WP_000046067.1|175768_176329_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000141082.1|176390_176885_+	hypothetical protein	NA	R4IFM1	Staphylococcus_phage	100.0	4.3e-87
WP_001580347.1|176905_177247_+	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	100.0	3.5e-56
WP_000414234.1|177249_180219_+|terminase	terminase	terminase	R4IG82	Staphylococcus_phage	99.7	1.5e-280
WP_000560193.1|180233_181169_+|tail	phage tail protein	tail	A7YGW1	Staphylococcus_virus	98.7	4.5e-178
WP_044556775.1|181179_183063_+	peptidase	NA	A0A0H4ITY6	Staphylococcus_phage	99.0	0.0e+00
WP_160199083.1|183075_184974_+	hypothetical protein	NA	R4IFM4	Staphylococcus_phage	99.7	0.0e+00
WP_160199084.1|184973_186797_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.5	0.0e+00
WP_000705896.1|186796_187174_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_033858151.1|187177_187351_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	98.2	1.9e-26
WP_000466777.1|187390_187690_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_115292769.1|187826_189701_+	CHAP domain-containing protein	NA	Q9FZY4	Staphylococcus_virus	99.2	0.0e+00
WP_160199085.1|189713_190952_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.8	7.7e-210
WP_000398873.1|190956_191352_+	hypothetical protein	NA	Q4ZDC6	Staphylococcus_virus	99.2	2.1e-68
WP_000354132.1|191407_191845_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_001148136.1|191825_193271_+	CHAP domain-containing protein	NA	Q08JW9	Staphylococcus_phage	99.8	1.8e-295
WP_000528632.1|194226_194784_+	hypothetical protein	NA	W5R8Q1	Staphylococcus_phage	100.0	5.7e-104
WP_001807150.1|195235_196555_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_129754921.1|196781_197564_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	37.9	6.7e-34
WP_000821651.1|197842_198562_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	34.3	5.8e-24
WP_031927819.1|198596_199328_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	5.1e-28
WP_031927818.1|199478_200264_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	3.8e-45
WP_001236367.1|200302_201058_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.0	3.9e-39
WP_031927817.1|201341_202118_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000554278.1|203402_204002_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410108.1|204349_204571_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031927815.1|204844_205339_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000848321.1|205735_206512_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_106459764.1|206532_206769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106459763.1|207732_208668_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	6.7e-174
WP_000782462.1|208669_209653_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	3.4e-184
WP_031927813.1|210021_210813_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550245.1|210817_211291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025174462.1|211544_211763_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	83.3	4.1e-26
WP_001092761.1|212236_212815_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	74.0	1.5e-67
WP_106459762.1|214601_215324_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	95.4	2.4e-126
WP_001038864.1|215381_216101_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	92.9	2.4e-123
WP_001038741.1|216226_216946_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	95.8	4.0e-126
WP_106459761.1|217309_218854_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	1.3e-283
WP_047213567.1|218846_220037_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	34.7	1.5e-45
WP_000742593.1|220673_221123_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000747794.1|221436_221880_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_160199086.1|221879_222323_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_106459760.1|222508_223084_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	89.6	4.5e-72
WP_000414223.1|223281_223854_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	7.1e-25
WP_000627546.1|223954_224296_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	3.0e-55
WP_047213559.1|224336_224963_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	92.4	2.8e-75
WP_000070657.1|225037_226033_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.8	2.9e-74
WP_072357764.1|226114_226765_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	67.6	9.5e-34
WP_072357839.1|227066_227522_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.4e-79
WP_000348367.1|227680_229159_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.7	6.9e-282
WP_000778513.1|229163_230165_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	8.2e-186
WP_000718107.1|230161_230419_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672018.1|230484_230958_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	97.5	1.0e-82
WP_072357842.1|230962_231709_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	1.3e-140
WP_000109907.1|232003_233596_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
233277:233294	attR	TATAATTCATCTTTTTTA	NA	NA	NA	NA
WP_000933822.1|233967_235161_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366163.1|235285_236194_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453315.1|236405_237239_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000623473.1|237488_237842_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	77.8	4.2e-20
WP_001200550.1|237838_238204_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	98.3	6.2e-59
WP_000091445.1|238459_238762_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|239019_239733_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168909.1|240169_240805_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|241102_241546_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153740.1|241532_241976_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671048.1|242088_242559_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	96.8	4.8e-80
WP_000384171.1|242757_242982_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|243257_244112_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163240.1|244461_244857_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	2.4e-72
WP_000989112.1|244874_246167_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	97.7	8.8e-225
WP_000221188.1|246166_246481_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	2.8e-52
WP_047213554.1|247001_248504_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	8.6e-30
WP_000384178.1|248996_250028_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	6.9e-196
WP_000493884.1|250034_250667_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	1.4e-111
WP_047213550.1|250677_251859_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	5.1e-227
WP_001008551.1|251871_252336_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|252457_253459_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_072357767.1|253570_253690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266089.1|253692_254520_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|255090_255492_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|255611_256175_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|256171_257125_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|257234_258416_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108719.1|258706_261121_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_000836469.1|261142_261454_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_160199087.1|261779_266846_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	92.5	7.3e-291
>prophage 3
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	395496	404539	2840057	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|395496_396501_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019170.1|396502_397528_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|397550_398690_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|398708_398969_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749803.1|399243_401523_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_042908036.1|401725_403999_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|404020_404539_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 4
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	474018	482330	2840057	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_106459684.1|474018_475818_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.1	3.0e-53
WP_001283055.1|476041_477148_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624574.1|477278_477956_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683926.1|477958_479059_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	2.3e-08
WP_001062177.1|479172_480519_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924216.1|480528_481419_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|481544_482330_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 5
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	758130	799370	2840057	portal,transposase,terminase,tail,head,holin,protease	Staphylococcus_phage(38.71%)	49	NA	NA
WP_052724874.1|758130_759471_-	hypothetical protein	NA	A0A1J0MFV1	Staphylococcus_phage	58.7	7.0e-140
WP_000997672.1|759725_759935_-	helix-turn-helix domain-containing protein	NA	A0A1W6JNK0	Staphylococcus_phage	59.4	1.9e-12
WP_000907423.1|760338_760767_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000459699.1|760766_761081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001019311.1|761093_761597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001793526.1|761790_761988_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
WP_031927627.1|762463_763384_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQL2	Staphylococcus_phage	50.2	1.2e-66
WP_047213423.1|763448_763832_-|holin	phage holin family protein	holin	H9A0W5	Staphylococcus_phage	39.2	4.3e-18
WP_000665466.1|763815_764130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000569801.1|764164_764575_-	hypothetical protein	NA	A0A1I9KKA6	Lactobacillus_phage	32.8	3.9e-09
WP_000571592.1|768002_768761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031927625.1|768763_772945_-|tail	phage tail tape measure protein	tail	Q9T0X1	Lactobacillus_phage	42.6	3.2e-58
WP_000159313.1|773002_773227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000021684.1|773274_773625_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000213868.1|773652_774336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072314.1|774341_774779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000114215.1|774778_775117_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000744618.1|775100_775445_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_000406284.1|775419_775725_-	hypothetical protein	NA	A0A059T7R0	Listeria_phage	44.8	6.0e-15
WP_000152780.1|775746_776916_-	hypothetical protein	NA	A0A0U4JIF4	Bacillus_phage	50.5	1.2e-98
WP_047213417.1|776942_777629_-|protease	Clp protease ClpP	protease	A0A2H4J8Y7	uncultured_Caudovirales_phage	49.5	1.4e-43
WP_000523761.1|777628_778765_-|portal	phage portal protein	portal	A0A2H4JBZ5	uncultured_Caudovirales_phage	41.4	7.8e-84
WP_046463075.1|778780_780424_-|terminase	terminase large subunit	terminase	A0A0U4B089	Bacillus_phage	57.3	8.4e-180
WP_000868798.1|780407_780740_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000870118.1|781058_781349_-	HNH endonuclease	NA	D2XR61	Bacillus_phage	43.2	1.3e-19
WP_000933402.1|781781_782273_-	hypothetical protein	NA	S5MAA9	Brevibacillus_phage	30.0	7.4e-07
WP_106459773.1|782577_784452_-	DNA primase	NA	A0A1B1P7L5	Bacillus_phage	57.5	3.1e-210
WP_000584491.1|784483_784675_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000231299.1|785095_785566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000792984.1|785588_785894_-	hypothetical protein	NA	A0A2H4JF73	uncultured_Caudovirales_phage	73.7	6.2e-36
WP_000394569.1|785969_786359_-	hypothetical protein	NA	U3PG42	Staphylococcus_phage	51.9	4.5e-07
WP_000560476.1|786462_788181_-	hypothetical protein	NA	A0A1B1P7M5	Bacillus_phage	63.6	1.9e-211
WP_106459774.1|788462_788945_-	DUF669 domain-containing protein	NA	A0A2H4J1S8	uncultured_Caudovirales_phage	37.3	3.7e-19
WP_001250666.1|788990_789197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031927619.1|789214_791041_-	AAA family ATPase	NA	A0A1B1P7N0	Bacillus_phage	56.3	2.6e-166
WP_000160835.1|791030_791336_-	hypothetical protein	NA	A0A1B1P7M6	Bacillus_phage	59.3	5.8e-26
WP_025174483.1|791328_791646_-	hypothetical protein	NA	A0A2P0ZLA7	Lactobacillus_phage	43.2	7.1e-19
WP_001002734.1|791636_792887_-	helicase SNF2	NA	A0A1B1P7L4	Bacillus_phage	57.8	1.8e-134
WP_000786635.1|792891_793158_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_000072840.1|793551_793713_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_001157026.1|793811_794495_-	phage repressor protein	NA	A9CR56	Staphylococcus_phage	86.0	8.0e-108
WP_000800340.1|794554_794761_+	hypothetical protein	NA	A1BTY8	Staphylococcus_virus	75.0	4.3e-25
WP_000932237.1|795184_795460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001209962.1|795486_795705_-	DUF739 family protein	NA	A0A2I6PE94	Staphylococcus_phage	62.5	4.9e-19
WP_000664916.1|795872_796265_+	helix-turn-helix domain-containing protein	NA	A0A2I6PE55	Staphylococcus_phage	53.6	2.7e-28
WP_047212960.1|796421_797741_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000554410.1|797936_798320_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047213408.1|798331_799027_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	40.9	1.8e-06
WP_108630597.1|799079_799370_+	hypothetical protein	NA	A0A1W6JQD3	Staphylococcus_phage	51.9	7.0e-05
>prophage 6
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	1282171	1294348	2840057	integrase,capsid	Staphylococcus_phage(55.56%)	13	1267976:1267990	1291020:1291034
1267976:1267990	attL	AGCCTACAACCACAT	NA	NA	NA	NA
WP_000253083.1|1282171_1282663_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	39.9	3.0e-24
WP_160199114.1|1282846_1283905_-|capsid	phage capsid protein	capsid	NA	NA	NA	NA
WP_000884055.1|1283891_1284098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001081426.1|1284322_1284667_-	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	65.2	5.5e-41
WP_160199115.1|1285339_1287712_-	DNA primase	NA	A0A2H4JCU9	uncultured_Caudovirales_phage	39.2	4.1e-135
WP_160199116.1|1287803_1288103_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	81.8	2.6e-39
WP_001058500.1|1288103_1288328_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	60.3	2.9e-14
WP_000163544.1|1288478_1288697_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000583241.1|1288848_1289586_+	helix-turn-helix transcriptional regulator	NA	A0A1W6JQE6	Staphylococcus_phage	31.2	1.2e-05
WP_031898813.1|1289600_1290707_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	43.9	6.9e-77
WP_000586155.1|1290718_1290934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085185.1|1291489_1291954_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
1291020:1291034	attR	ATGTGGTTGTAGGCT	NA	NA	NA	NA
WP_031927540.1|1291975_1294348_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.6	7.3e-92
>prophage 7
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	1346786	1360979	2840057		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616870.1|1346786_1347548_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	5.0e-18
WP_001245577.1|1347544_1348501_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_047213721.1|1348490_1349459_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.1	8.0e-138
WP_000499194.1|1349497_1349653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1349828_1350800_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1350917_1353023_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692523.1|1352985_1353384_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	4.3e-53
WP_001068503.1|1354184_1355051_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930020.1|1355070_1355571_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	70.8	2.2e-51
WP_000193751.1|1355910_1357416_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000429016.1|1357697_1358615_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000197262.1|1359220_1359763_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663031.1|1359920_1360979_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
>prophage 8
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	1372951	1380771	2840057		Pandoravirus(16.67%)	10	NA	NA
WP_001217797.1|1372951_1374103_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604509.1|1374086_1374680_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	1.5e-38
WP_000446721.1|1375030_1375699_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.1	9.6e-66
WP_000941334.1|1375700_1376120_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062968.1|1376123_1376837_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637683.1|1376935_1377520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093557.1|1377799_1378240_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037811.1|1378581_1379055_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1379029_1379716_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1379715_1380771_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 9
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	2840057	2818559	2840055	2840057	terminase,integrase	Staphylococcus_phage(89.74%)	39	2821677:2821691	2829857:2829871
WP_000791409.1|2818559_2819615_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	1.9e-36
WP_047213639.1|2819636_2820653_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	1.1e-25
2821677:2821691	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857174.1|2822046_2823084_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	99.7	1.7e-178
WP_000191459.1|2823191_2823806_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001013104.1|2823802_2823949_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705240.1|2823984_2824167_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_106459806.1|2824237_2824957_-	helix-turn-helix transcriptional regulator	NA	Q8SDX2	Staphylococcus_phage	99.2	1.9e-131
WP_001198673.1|2825098_2825317_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000435341.1|2825329_2825590_+	transcriptional regulator	NA	A7TW91	Staphylococcus_phage	100.0	2.7e-40
WP_106459807.1|2825613_2826153_-	hypothetical protein	NA	A7TW92	Staphylococcus_phage	99.4	3.8e-97
WP_106459808.1|2826209_2826959_+	oxidoreductase	NA	Q8SDM9	Staphylococcus_phage	99.2	2.2e-135
WP_001566738.1|2826975_2827170_+	hypothetical protein	NA	Q4ZDS1	Staphylococcus_virus	100.0	1.0e-23
WP_000768245.1|2827164_2827521_-	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_000389905.1|2827570_2827762_+	hypothetical protein	NA	Q4ZDR9	Staphylococcus_virus	100.0	2.1e-26
WP_000801108.1|2827763_2827991_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	100.0	1.7e-38
WP_001120935.1|2828049_2828370_+	DUF771 domain-containing protein	NA	Q4ZDR7	Staphylococcus_virus	100.0	1.5e-56
WP_000066020.1|2828366_2828528_+	DUF1270 domain-containing protein	NA	A0A2I6PDF7	Staphylococcus_phage	100.0	1.9e-20
WP_000291489.1|2828620_2828881_+	DUF1108 family protein	NA	A0A1W6JQ03	Staphylococcus_phage	100.0	7.6e-43
WP_001205732.1|2828889_2829153_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_160199160.1|2829161_2831105_+	AAA family ATPase	NA	R9QT82	Staphylococcus_phage	98.5	0.0e+00
2829857:2829871	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000138475.1|2831106_2832027_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_106459809.1|2832092_2832725_+	MBL fold metallo-hydrolase	NA	A0A1W6JPL3	Staphylococcus_phage	97.5	3.9e-85
WP_106459810.1|2832725_2833196_+	single-stranded DNA-binding protein	NA	S4V682	Staphylococcus_phage	94.2	1.3e-77
WP_106459811.1|2833225_2834110_+	DnaD domain protein	NA	I1W658	Staphylococcus_phage	98.6	4.7e-137
WP_000338527.1|2834116_2834335_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	98.6	4.0e-37
WP_106459812.1|2834343_2834748_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	99.3	2.4e-72
WP_000101270.1|2834760_2835129_+	hypothetical protein	NA	A0A0E3XD52	Staphylococcus_phage	100.0	6.7e-53
WP_000131381.1|2835132_2835375_+	hypothetical protein	NA	A0A1P8L6E3	Staphylococcus_phage	100.0	3.0e-41
WP_001065046.1|2835389_2835641_+	DUF1024 family protein	NA	G4KNP4	Staphylococcus_phage	96.4	4.1e-38
WP_001061842.1|2836262_2836769_+	hypothetical protein	NA	M9NS45	Staphylococcus_phage	100.0	5.9e-92
WP_070046073.1|2836805_2837093_+	DUF1381 domain-containing protein	NA	Q4ZAB6	Staphylococcus_virus	94.7	8.4e-43
WP_070046072.1|2837085_2837322_+	hypothetical protein	NA	A0A0E3T8L8	Staphylococcus_phage	92.3	2.2e-33
WP_106459813.1|2837305_2837701_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	95.4	9.1e-64
WP_000595265.1|2837697_2837847_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_106459814.1|2837846_2838047_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000282752.1|2838069_2838531_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	1.1e-68
WP_000406189.1|2838645_2839098_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	98.7	3.9e-79
WP_106459818.1|2839113_2839458_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	95.6	4.3e-62
WP_000919026.1|2839587_2840055_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	1.1e-81
