assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	1	981980-982075	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTTTATGCATGTGCTCGACGCATGTATCCCTCT	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|432aa|up_1|NZ_CP047849.1_980362_981658_-,NA|45aa|up_0|NZ_CP047849.1_981809_981944_+,NA	NA|221aa|up_9|NZ_CP047849.1_972188_972851_-	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	NA|340aa|up_8|NZ_CP047849.1_972983_974003_-	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|454aa|up_7|NZ_CP047849.1_973999_975361_-	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|78aa|up_6|NZ_CP047849.1_975558_975792_+	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|573aa|up_5|NZ_CP047849.1_976028_977747_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|89aa|up_4|NZ_CP047849.1_977749_978016_-	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|181aa|up_3|NZ_CP047849.1_978169_978712_-	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|391aa|up_2|NZ_CP047849.1_978765_979938_-	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|432aa|up_1|NZ_CP047849.1_980362_981658_-	NA	NA|45aa|up_0|NZ_CP047849.1_981809_981944_+	NA	NA|192aa|down_0|NZ_CP047849.1_982527_983103_+	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|467aa|down_1|NZ_CP047849.1_983117_984518_+	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|269aa|down_2|NZ_CP047849.1_984510_985317_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|416aa|down_3|NZ_CP047849.1_985581_986829_-	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|493aa|down_4|NZ_CP047849.1_986850_988329_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|189aa|down_5|NZ_CP047849.1_988343_988910_-	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|343aa|down_6|NZ_CP047849.1_988912_989941_-	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|495aa|down_7|NZ_CP047849.1_989933_991418_-	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|730aa|down_8|NZ_CP047849.1_991396_993586_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|224aa|down_9|NZ_CP047849.1_993578_994250_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	2	1115443-1115751	1,2	CRT,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	5	1115556-1115581|1115556-1115581|1115556-1115581|1115670-1115695|1115696-1115728	NZ_CP047849.1_89329-89304|NZ_CP047849.1_1207549-1207524|NZ_CP047849.1_1652865-1652890|NZ_CP047849.1_1244420-1244445|NZ_CP047849.1_1164251-1164219	NA:NA	4,1	4	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047849.1_1099567_1100470_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047849.1_1100635_1104289_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047849.1_1104289_1107766_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047849.1_1107925_1108501_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047849.1_1108516_1109041_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047849.1_1109045_1109621_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047849.1_1109945_1111277_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047849.1_1111627_1112833_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047849.1_1112822_1114202_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047849.1_1114443_1115373_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047849.1_1115875_1117120_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047849.1_1117228_1118419_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047849.1_1118726_1119854_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047849.1_1120215_1120593_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047849.1_1121008_1121602_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047849.1_1121665_1122049_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047849.1_1122179_1124585_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047849.1_1124577_1125006_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047849.1_1125017_1125347_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047849.1_1125339_1126836_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	3	1164499-1164580	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	1164523-1164556|1164523-1164556	NZ_CP047849.1_601051-601084|NZ_CP047849.1_689523-689490	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|38aa|down_0|NZ_CP047849.1_1165558_1165672_-	NA|414aa|up_9|NZ_CP047849.1_1154982_1156224_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047849.1_1156338_1157646_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047849.1_1157743_1158505_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047849.1_1158832_1159684_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047849.1_1159916_1160111_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047849.1_1160464_1161286_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047849.1_1161303_1161999_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047849.1_1161991_1163017_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047849.1_1163266_1163563_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047849.1_1163555_1163942_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|38aa|down_0|NZ_CP047849.1_1165558_1165672_-	NA	NA|127aa|down_1|NZ_CP047849.1_1165735_1166116_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP047849.1_1166273_1166630_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP047849.1_1166773_1167094_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP047849.1_1167243_1167783_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP047849.1_1167865_1168582_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP047849.1_1168729_1169152_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP047849.1_1169550_1170045_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP047849.1_1170199_1170817_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP047849.1_1170889_1171450_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	4	1212897-1212977	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	8	1212923-1212951|1212923-1212951|1212923-1212951|1212923-1212951|1212923-1212951|1212923-1212951|1212923-1212951|1212923-1212951	NZ_CP047849.1_242870-242842|NZ_CP047849.1_1652756-1652728|NZ_CP047849.1_897718-897690|NZ_CP047849.1_2282504-2282476|NZ_CP047849.1_78518-78546|NZ_CP047849.1_421559-421587|NZ_CP047849.1_1096028-1096056|NZ_CP047849.1_1164486-1164514	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|36aa|down_5|NZ_CP047849.1_1220418_1220526_-,NA|35aa|down_7|NZ_CP047849.1_1221958_1222063_-	NA|301aa|up_9|NZ_CP047849.1_1201796_1202699_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047849.1_1202941_1203529_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047849.1_1204101_1205046_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047849.1_1205155_1206151_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047849.1_1206147_1207059_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047849.1_1207940_1208876_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047849.1_1208942_1210382_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047849.1_1210389_1210875_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047849.1_1210882_1211722_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047849.1_1211727_1212660_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047849.1_1213266_1216113_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047849.1_1216120_1218106_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047849.1_1218374_1218611_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047849.1_1218607_1219258_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047849.1_1219431_1220271_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047849.1_1220418_1220526_-	NA	NA|370aa|down_6|NZ_CP047849.1_1220679_1221790_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047849.1_1221958_1222063_-	NA	NA|844aa|down_8|NZ_CP047849.1_1222104_1224636_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047849.1_1225049_1225622_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	5	1369776-1369868	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|239aa|up_5|NZ_CP047849.1_1364643_1365360_-,NA|169aa|up_4|NZ_CP047849.1_1365521_1366028_-,NA|36aa|down_3|NZ_CP047849.1_1373276_1373384_-	NA|75aa|up_9|NZ_CP047849.1_1360765_1360990_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP047849.1_1361184_1362114_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP047849.1_1363061_1363436_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP047849.1_1363686_1364475_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP047849.1_1364643_1365360_-	NA	NA|169aa|up_4|NZ_CP047849.1_1365521_1366028_-	NA	NA|267aa|up_3|NZ_CP047849.1_1366163_1366964_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP047849.1_1366947_1367667_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP047849.1_1367721_1368672_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP047849.1_1368819_1369647_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP047849.1_1370085_1370721_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP047849.1_1371109_1372771_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP047849.1_1372767_1373151_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP047849.1_1373276_1373384_-	NA	NA|337aa|down_4|NZ_CP047849.1_1373458_1374469_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP047849.1_1374967_1375489_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP047849.1_1375516_1376812_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP047849.1_1376851_1377328_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP047849.1_1377496_1378033_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP047849.1_1378243_1379182_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	6	1614177-1614278	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|179aa|up_7|NZ_CP047849.1_1605795_1606332_+,NA|221aa|up_1|NZ_CP047849.1_1612423_1613086_+,NA|34aa|down_0|NZ_CP047849.1_1614950_1615052_-,NA|98aa|down_5|NZ_CP047849.1_1620039_1620333_+,NA|128aa|down_7|NZ_CP047849.1_1621286_1621670_+,NA|70aa|down_9|NZ_CP047849.1_1622494_1622704_+	NA|91aa|up_9|NZ_CP047849.1_1604027_1604300_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047849.1_1604698_1605403_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047849.1_1605795_1606332_+	NA	NA|514aa|up_6|NZ_CP047849.1_1606444_1607986_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047849.1_1608010_1609477_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047849.1_1609514_1610783_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047849.1_1610782_1611361_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047849.1_1611873_1612281_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047849.1_1612423_1613086_+	NA	NA|319aa|up_0|NZ_CP047849.1_1613203_1614160_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP047849.1_1614950_1615052_-	NA	NA|463aa|down_1|NZ_CP047849.1_1615136_1616525_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047849.1_1616605_1617361_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047849.1_1617852_1618422_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047849.1_1618437_1619961_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_5|NZ_CP047849.1_1620039_1620333_+	NA	NA|209aa|down_6|NZ_CP047849.1_1620405_1621032_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP047849.1_1621286_1621670_+	NA	NA|194aa|down_8|NZ_CP047849.1_1621735_1622317_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP047849.1_1622494_1622704_+	NA
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	7	2032366-2032539	1,7	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	19	2032419-2032435|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504|2032489-2032504	NZ_CP047849.1_1731444-1731428|NZ_CP047849.1_78470-78485|NZ_CP047849.1_89334-89349|NZ_CP047849.1_601023-601038|NZ_CP047849.1_685139-685154|NZ_CP047849.1_689551-689536|NZ_CP047849.1_897652-897637|NZ_CP047849.1_998307-998322|NZ_CP047849.1_1164226-1164241|NZ_CP047849.1_1207554-1207569|NZ_CP047849.1_1652860-1652845|NZ_CP047849.1_2198462-2198477|NZ_CP047849.1_89393-89408|NZ_CP047849.1_242690-242675|NZ_CP047849.1_242746-242731|NZ_CP047849.1_421511-421526|NZ_CP047849.1_643492-643507|NZ_CP047849.1_901620-901605|NZ_CP047849.1_2384677-2384692	NA:NA	2,1	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|60aa|up_1|NZ_CP047849.1_2029325_2029505_+,NA	NA|205aa|up_9|NZ_CP047849.1_2023043_2023658_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP047849.1_2023650_2024901_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP047849.1_2024916_2025930_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP047849.1_2025898_2026477_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP047849.1_2026473_2027052_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP047849.1_2027044_2027749_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP047849.1_2027745_2028504_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP047849.1_2028500_2029133_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP047849.1_2029325_2029505_+	NA	NA|681aa|up_0|NZ_CP047849.1_2030225_2032268_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP047849.1_2032714_2033767_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP047849.1_2033753_2034626_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP047849.1_2034622_2034928_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP047849.1_2034891_2036130_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP047849.1_2036293_2036854_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP047849.1_2037702_2038365_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP047849.1_2038381_2039074_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP047849.1_2039070_2039838_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP047849.1_2040072_2040573_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP047849.1_2040575_2041052_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	8	2473950-2474143	2	CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	3	15	2473973-2474005|2473973-2474005|2473973-2474005|2473973-2474005|2473973-2474005|2474029-2474064|2474029-2474064|2474029-2474064|2474029-2474064|2474088-2474120|2474088-2474120|2474088-2474120|2474088-2474120|2474088-2474120|2474088-2474120	NZ_CP047849.1_689568-689536|NZ_CP047849.1_897669-897637|NZ_CP047849.1_89317-89349|NZ_CP047849.1_1207537-1207569|NZ_CP047849.1_2198445-2198477|NZ_CP047849.1_897725-897690|NZ_CP047849.1_242877-242842|NZ_CP047849.1_78511-78546|NZ_CP047849.1_421552-421587|NZ_CP047849.1_689568-689536|NZ_CP047849.1_897669-897637|NZ_CP047849.1_89317-89349|NZ_CP047849.1_601006-601038|NZ_CP047849.1_1207537-1207569|NZ_CP047849.1_2198445-2198477	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP047849.1_2474202_2474373_-,NA|84aa|down_5|NZ_CP047849.1_2477512_2477764_-,NA|106aa|down_8|NZ_CP047849.1_2482888_2483206_-,NA|55aa|down_9|NZ_CP047849.1_2483450_2483615_-	NA|202aa|up_9|NZ_CP047849.1_2466844_2467450_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047849.1_2467619_2468624_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047849.1_2468654_2469161_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047849.1_2469162_2469657_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047849.1_2469719_2470979_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047849.1_2470975_2471461_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047849.1_2471474_2471921_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047849.1_2471926_2472160_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047849.1_2472166_2472766_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047849.1_2472785_2473808_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047849.1_2474202_2474373_-	NA	NA|117aa|down_1|NZ_CP047849.1_2474498_2474849_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047849.1_2474950_2476162_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047849.1_2476154_2476595_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047849.1_2476756_2477521_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047849.1_2477512_2477764_-	NA	NA|422aa|down_6|NZ_CP047849.1_2478152_2479418_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047849.1_2479534_2482702_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047849.1_2482888_2483206_-	NA	NA|55aa|down_9|NZ_CP047849.1_2483450_2483615_-	NA
GCF_009912915.1_ASM991291v1	NZ_CP047849	Staphylococcus aureus strain UP_403 chromosome, complete genome	9	2598156-2598306	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_2|NZ_CP047849.1_2595515_2595608_-,NA|35aa|up_0|NZ_CP047849.1_2597719_2597824_+,NA|364aa|down_0|NZ_CP047849.1_2598323_2599415_-,NA|77aa|down_5|NZ_CP047849.1_2603203_2603434_+	NA|369aa|up_9|NZ_CP047849.1_2585128_2586235_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP047849.1_2586234_2586669_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP047849.1_2586680_2588813_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP047849.1_2588847_2590386_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP047849.1_2591066_2592872_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP047849.1_2593103_2593886_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP047849.1_2593953_2594811_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP047849.1_2595515_2595608_-	NA	NA|379aa|up_1|NZ_CP047849.1_2595896_2597033_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP047849.1_2597719_2597824_+	NA	NA|364aa|down_0|NZ_CP047849.1_2598323_2599415_-	NA	NA|327aa|down_1|NZ_CP047849.1_2599680_2600661_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047849.1_2600662_2600983_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047849.1_2601134_2601800_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047849.1_2602234_2603173_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047849.1_2603203_2603434_+	NA	NA|458aa|down_6|NZ_CP047849.1_2604105_2605479_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047849.1_2605936_2606350_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047849.1_2606549_2606993_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047849.1_2607113_2607824_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
