bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	1.1|411006|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.970	33	1	0	1	33	681012	680980	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	1.11e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	680980-681012	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCA	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	1.1|411006|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.970	33	1	0	1	33	1242963	1242995	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	1.11e-08	50.7	1.0	TGGGCCCCAACACAGAGAAATTGGATTCCCAAT	1242963-1242995	TGGGCCCCAACACAGAGAAATTGGATTTCCAAT	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	2.1|1199759|34|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	97.059	34	1	0	1	34	681013	680980	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	4.22e-09	52.3	1.0	ATGGGCCCCAACAAAGAGAAATTGGATTCTCAAT	680980-681013	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	3.1|1248499|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	100.000	31	0	0	1	31	1804970	1804940	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	7.91e-09	50.7	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1804940-1804970	CTGTGTTGGGGCCCCGCCAACTTGCATTGCC	0
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	3.1|1248499|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.774	31	1	0	1	31	376551	376581	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	7.12e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	376551-376581	GGCAATGGAAGTTGGCGGGGCCCCAACACAG	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	3.1|1248499|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.774	31	1	0	1	31	1805025	1804995	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	7.12e-08	47.5	1.0	GGCAATGCAAGTTGGCGGGGCCCCAACACAG	1804995-1805025	CTGTGTTGGGGCCCCGCCAACTTGCATTACC	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	5.1|2355476|46|NZ_CP047856|PILER-CR	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	95.652	46	2	0	1	46	2351952	2351997	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	1.61e-13	68.2	1.0	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA	2351952-2351997	ACAAAGATAAACCTAATTATCAATTCGGTGGACACAATAGTGTTGA	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	5.2|2355539|37|NZ_CP047856|PILER-CR	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	94.595	37	2	0	1	37	2352015	2352051	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	1.76e-09	53.9	1.0	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC	2352015-2352051	TTCCAAAAGTAAGCGGCCAAAATGAAGGTCAACAAAC	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	6.1|2431029|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.970	33	1	0	1	33	1199446	1199478	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	1.11e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1199446-1199478	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	6.1|2431029|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.970	33	1	0	1	33	1235664	1235696	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	1.11e-08	50.7	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1235664-1235696	CAGAAGCTGGCGGAAAGTCAGCTTACAATAATG	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	6.1|2431029|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.939	33	2	0	1	33	2822753	2822721	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	9.97e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	2822721-2822753	CATTATTGTAAGCTGACTTTCCGCCAGCCTCTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	6.1|2431029|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.939	33	2	0	1	33	1235720	1235752	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	9.97e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1235720-1235752	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	6.1|2431029|33|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.939	33	2	0	1	33	1235776	1235808	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	9.97e-08	47.5	1.0	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG	1235776-1235808	CAGAAGCTGACGGAAAGTCAGCTTACAATAATG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.774	31	1	0	1	31	1235724	1235754	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	7.12e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1235724-1235754	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	96.774	31	1	0	1	31	1235780	1235810	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	7.12e-08	47.5	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1235780-1235810	AGCTGACGGAAAGTCAGCTTACAATAATGTG	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	396400	396370	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	396370-396400	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	681054	681024	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	681024-681054	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	887153	887123	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	887123-887153	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	1416432	1416402	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1416402-1416432	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	1683703	1683673	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1683673-1683703	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	80559	80589	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	80559-80589	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	592476	592506	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	592476-592506	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	592592	592622	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	592592-592622	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	989452	989482	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	989452-989482	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	1199450	1199480	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1199450-1199480	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	1235668	1235698	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	1235668-1235698	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	2026723	2026753	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2026723-2026753	AGCTGGCGGAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	7.1|2595628|31|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	93.548	31	2	0	1	31	2606429	2606459	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	6.41e-07	44.4	1.0	AGCTGACAGAAAGTCAGCTTACAATAATGTG	2606429-2606459	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	10.1|2846763|34|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	100.000	34	0	0	1	34	892754	892721	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	4.69e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	892721-892754	TTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGG	0
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	10.1|2846763|34|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	100.000	34	0	0	1	34	1248521	1248554	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	4.69e-10	55.5	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	1248521-1248554	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	0
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	10.1|2846763|34|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	97.059	34	1	0	1	34	284329	284296	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	4.22e-09	52.3	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	284296-284329	TTGTAGAATTTCTTTTCGAAATTCTTTGTGTTGG	1
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	10.1|2846763|34|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	94.118	34	2	0	1	34	676606	676639	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	3.80e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	676606-676639	CCAACACAGAGAATTTCGATAAGAAATTCCACAA	2
NZ_CP047856	Staphylococcus aureus strain UP_1435 chromosome, complete genome	10.1|2846763|34|NZ_CP047856|CRISPRCasFinder	NZ_CP047856.1	Staphylococcus aureus strain UP_1435 chromosome, complete genome	94.118	34	2	0	1	34	2157171	2157204	410980-411064|1199735-1199816|1248475-1248553|1644864-1644966|2355459-2355592|2431006-2431084|2595603-2595683|2705158-2705243|2717483-2717564|2846739-2846820	3.80e-08	49.1	1.0	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA	2157171-2157204	CCAACAAAAAGAATTTCGAAAAGAAATTCTACAA	2
