The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	0	59367	2848793	portal,capsid,tail,head,holin,tRNA,plate,protease	Staphylococcus_phage(64.71%)	59	NA	NA
WP_001100664.1|1366_2605_+|portal	phage portal protein	portal	A0A2I6PER5	Staphylococcus_phage	100.0	6.9e-235
WP_000061866.1|2588_3362_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|3373_4537_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|4605_4884_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395498.1|4895_5228_+	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000110023.1|5224_5626_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|5626_6022_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|6056_6698_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169127.1|6789_7245_+	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000589167.1|7302_7653_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|7694_7853_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_160176132.1|7866_13935_+|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	97.9	0.0e+00
WP_001190533.1|13934_14759_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|14767_16351_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|16350_16641_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|16656_18567_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000067132.1|18566_20033_+|plate	BppU family phage baseplate upper protein	plate	B5WZQ8	Staphylococcus_phage	100.0	7.6e-257
WP_001166599.1|20032_20422_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|20414_20579_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|20624_20924_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339141.1|21059_21362_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000909205.1|21372_22827_+	CHAP domain-containing protein	NA	A0A2I6PF47	Staphylococcus_phage	99.6	2.8e-288
WP_160176133.1|23548_23764_+	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000913238.1|23853_24759_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476878.1|24816_25725_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001799520.1|25929_26094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001186908.1|26372_26918_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151997.1|27023_27272_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163814.1|27379_28333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902107.1|28322_29702_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
WP_000069298.1|29854_31315_+	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_016186859.1|31452_31539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001174260.1|31699_32686_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_000681744.1|32800_33769_-	asparaginase	NA	NA	NA	NA	NA
WP_000644393.1|33845_34505_+	(d)CMP kinase	NA	NA	NA	NA	NA
WP_001791200.1|34535_34652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791199.1|34768_34960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000133953.1|35216_36392_+	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_000165530.1|36613_37924_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000161753.1|37940_38939_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_001043863.1|39109_39382_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|39812_40385_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774679.1|40387_41113_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001819897.1|41129_42074_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|42165_42615_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_160176134.1|43083_44250_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	5.3e-35
WP_000776318.1|44275_45340_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_000245891.1|45349_46648_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000389521.1|46654_47899_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000005208.1|47912_48488_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	4.6e-08
WP_000154479.1|48477_49065_+	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_001827022.1|49136_49817_+	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000839927.1|50152_50470_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000690024.1|50713_51856_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_160176135.1|51860_53063_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
WP_000049917.1|53049_54021_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525060.1|54044_56738_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858795.1|57059_58352_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000362222.1|58680_59367_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
>prophage 2
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	63057	63684	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|63057_63684_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 3
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	73148	74027	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|73148_74027_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 4
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	112618	123075	2848793	transposase	Staphylococcus_phage(50.0%)	14	NA	NA
WP_000282169.1|112618_113323_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.3	1.9e-11
WP_001814377.1|113567_113762_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|113773_114025_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404628.1|114062_115187_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995290.1|115202_115640_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|116063_117020_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|117219_117699_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166055.1|117713_118553_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	5.1e-48
WP_000159899.1|118638_119172_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|119164_119593_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|119604_120105_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|120104_120326_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000121213.1|120398_121346_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
WP_000342154.1|121584_123075_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	1.7e-22
>prophage 5
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	126483	128495	2848793		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|126483_127143_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_160176137.1|127139_128495_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	4.6e-14
>prophage 6
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	134863	135655	2848793		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|134863_135655_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 7
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	139190	144216	2848793	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|139190_140327_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001794103.1|140358_140988_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|141006_141276_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|141437_141746_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|141916_142117_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876206.1|142313_142715_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216956.1|142950_144216_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.0	4.0e-12
>prophage 8
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	152058	153660	2848793		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|152058_153660_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 9
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	158085	161539	2848793		Indivirus(50.0%)	3	NA	NA
WP_000079448.1|158085_158937_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	6.8e-16
WP_000974850.1|158943_159585_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077549.1|159724_161539_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.3	2.3e-154
>prophage 10
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	164953	165655	2848793		Tupanvirus(100.0%)	1	NA	NA
WP_000571253.1|164953_165655_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.0e-13
>prophage 11
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	173136	175489	2848793		Acinetobacter_phage(100.0%)	2	NA	NA
WP_000153717.1|173136_173919_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.7	1.2e-27
WP_000604802.1|174922_175489_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	1.7e-23
>prophage 12
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	179807	183373	2848793	transposase	Bacillus_phage(50.0%)	3	NA	NA
WP_000283027.1|179807_181070_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	1.7e-95
WP_001123276.1|181217_181403_+	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_000277741.1|181726_183373_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 13
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	192642	197036	2848793		Bacillus_phage(50.0%)	2	NA	NA
WP_001289586.1|192642_195045_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.1e-92
WP_001574370.1|195044_197036_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 14
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	202653	204300	2848793		Vibrio_phage(100.0%)	1	NA	NA
WP_001088983.1|202653_204300_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.5	1.9e-22
>prophage 15
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	207969	209091	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691309.1|207969_209091_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.1	2.1e-09
>prophage 16
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	213240	218896	2848793		Phage_Wrath(25.0%)	7	NA	NA
WP_001208760.1|213240_213864_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
WP_000380738.1|214243_215107_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
WP_001791425.1|215180_215285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688127.1|215281_216259_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085657.1|216415_216685_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|217138_217288_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_160176143.1|217378_218896_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.5	3.6e-92
>prophage 17
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	229032	233308	2848793		Bacillus_phage(50.0%)	6	NA	NA
WP_000841344.1|229032_229566_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|229704_229893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000624452.1|230005_230608_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670311.1|230604_231696_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603961.1|231699_232431_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001794121.1|232399_233308_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.8e-21
>prophage 18
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	237262	264061	2848793	transposase,head,capsid	Staphylococcus_phage(58.33%)	36	NA	NA
WP_077670291.1|237262_237598_-|head	phage head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	60.4	2.6e-27
WP_000600810.1|237665_237803_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001574384.1|237799_238066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429703.1|238111_238390_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000906224.1|238540_238789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094409958.1|239261_240828_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_160176234.1|240885_241131_-|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	67.5	1.9e-27
WP_001217295.1|241208_241403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791418.1|241413_241587_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000414196.1|242255_242840_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791415.1|242806_242935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000905625.1|242999_243197_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077670290.1|243198_243864_-|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	53.0	4.6e-60
WP_000585095.1|243924_244176_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477487.1|245696_246113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000121213.1|246539_247487_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
WP_000006110.1|247698_247884_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_031788482.1|248276_248387_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002343.1|249088_249295_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_001071312.1|249591_249804_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
WP_000134547.1|250489_250774_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000805733.1|250924_251245_+	DUF961 domain-containing protein	NA	NA	NA	NA	NA
WP_000386891.1|251258_251561_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000388596.1|251802_252828_+	replication initiation factor domain-containing protein	NA	NA	NA	NA	NA
WP_000692007.1|252888_253944_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_000015642.1|253948_254209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000358146.1|254220_254604_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160176144.1|254638_257134_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_001251205.1|257187_258546_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.9	4.0e-42
WP_000681139.1|258550_260398_+	membrane protein	NA	NA	NA	NA	NA
WP_115300148.1|260387_261434_+	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_000810443.1|261440_262031_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001255381.1|262086_262443_+	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000746372.1|262551_263055_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_078367270.1|263035_263572_+|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	1.3e-28
WP_001659797.1|263863_264061_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
>prophage 19
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	269132	269609	2848793		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|269132_269609_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 20
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	275552	282034	2848793		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103747.1|275552_276371_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_001077635.1|276845_277388_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516249.1|277393_279403_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
WP_000073334.1|279415_282034_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
>prophage 21
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	291448	292492	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|291448_292492_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 22
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	296691	302235	2848793		Bacillus_virus(33.33%)	4	NA	NA
WP_160176145.1|296691_297978_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089941.1|297977_299243_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293307.1|299273_299987_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_042907377.1|299991_302235_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 23
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	307375	319190	2848793	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864182.1|307375_308347_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282296.1|308361_309279_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|309448_309799_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043642.1|310185_312303_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020856.1|312307_312625_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|312621_312906_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097463.1|312926_314102_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|314122_314590_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000139497.1|314879_319190_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 24
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	323488	324259	2848793		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|323488_324259_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 25
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	329033	335897	2848793	tRNA,protease	Erwinia_phage(33.33%)	5	NA	NA
WP_000379051.1|329033_330437_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	6.4e-27
WP_000072681.1|330502_331048_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015609.1|331044_331941_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	6.1e-31
WP_000195263.1|332358_333666_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|333821_335897_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
>prophage 26
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	339730	342703	2848793		Tupanvirus(50.0%)	3	NA	NA
WP_000110252.1|339730_340639_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	2.3e-17
WP_001020801.1|340660_341827_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176401.1|341935_342703_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 27
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	356087	358145	2848793		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|356087_356819_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|356934_357168_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|357410_358145_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 28
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	368515	370510	2848793		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|368515_370510_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 29
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	373657	374593	2848793	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|373657_374593_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 30
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	379602	381859	2848793		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|379602_380802_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|381017_381236_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368225.1|381235_381859_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
>prophage 31
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	385173	385785	2848793		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|385173_385785_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 32
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	389752	394363	2848793		Halovirus(33.33%)	4	NA	NA
WP_001190910.1|389752_390853_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	9.6e-63
WP_000767018.1|390854_392129_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|392146_393028_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178615.1|393055_394363_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 33
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	399294	402048	2848793	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384706.1|399294_402048_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	2.1e-90
>prophage 34
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	421404	421602	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245800.1|421404_421602_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	1.2e-19
>prophage 35
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	430513	432689	2848793	transposase	Staphylococcus_virus(100.0%)	2	NA	NA
WP_000277741.1|430513_432160_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001801391.1|432461_432689_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	67.7	1.9e-18
>prophage 36
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	436149	436500	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000669541.1|436149_436500_-	complement inhibitor SCIN-C	NA	A7TWS0	Staphylococcus_phage	50.0	1.9e-20
>prophage 37
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	447934	452492	2848793		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|447934_448249_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249264.1|448421_450770_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	7.2e-15
WP_000161937.1|450779_452492_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
>prophage 38
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	457370	458429	2848793	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|457370_458429_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 39
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	470408	473319	2848793		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|470408_470891_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263793.1|470892_471435_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|471504_471894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|471896_472151_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757584.1|472389_473319_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	6.5e-12
>prophage 40
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	494960	498603	2848793		Mycoplasma_phage(50.0%)	4	NA	NA
WP_160176152.1|494960_496055_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020627.1|496067_496607_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000455584.1|496750_497026_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|497196_498603_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
>prophage 41
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	503244	503796	2848793		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|503244_503796_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 42
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	509910	514290	2848793		Bacillus_virus(50.0%)	5	NA	NA
WP_001289622.1|509910_510144_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	1.3e-09
WP_000040041.1|510380_512099_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|512101_512368_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505964.1|512521_513064_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685075.1|513117_514290_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	1.5e-74
>prophage 43
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	517469	532231	2848793		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921981.1|517469_518870_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.7	1.4e-10
WP_000273254.1|518862_519669_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101912.1|519935_521183_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709288.1|521204_522683_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.5	9.2e-77
WP_000238673.1|522697_523264_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000030814.1|523266_524295_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000483716.1|524287_525772_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
WP_000032734.1|525750_527940_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000666808.1|527932_528604_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848351.1|528605_528869_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174050.1|528868_529573_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_001010391.1|529576_530701_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861576.1|530687_531170_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225845.1|531370_532231_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	1.2e-39
>prophage 44
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	542410	546193	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_061732038.1|542410_546193_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	38.0	1.1e-54
>prophage 45
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	549859	580203	2848793	bacteriocin,holin,protease	Staphylococcus_phage(16.67%)	33	NA	NA
WP_000676568.1|549859_550933_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
WP_001088791.1|551014_552196_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284455.1|552233_552563_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|552798_553620_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150205.1|553612_554416_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526678.1|554402_556076_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_001814117.1|556062_557274_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_072357920.1|557377_557455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160176154.1|557605_558544_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620943.1|558595_559147_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001794164.1|559236_559527_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	2.6e-07
WP_001794249.1|559590_559722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081338.1|559768_560728_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|561215_561572_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000719183.1|561660_563142_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_000410718.1|563147_563435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791476.1|563775_564066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571191.1|564153_564795_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	5.0e-19
WP_000873929.1|564791_565112_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000870819.1|565114_567079_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_001794574.1|567122_567395_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|567404_567506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_099119695.1|568044_568122_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_001033867.1|568422_569025_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|569039_569216_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668820.1|569414_570401_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876825.1|570481_570700_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|570909_571479_+	competence protein ComK	NA	NA	NA	NA	NA
WP_000414169.1|571967_573479_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|573617_574976_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_001794169.1|574992_577317_-|protease	serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_000928413.1|577535_578339_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049957.1|578640_580203_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
>prophage 46
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	601424	603233	2848793		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082722.1|601424_603233_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
>prophage 47
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	607183	621025	2848793	transposase	Bacillus_virus(28.57%)	12	NA	NA
WP_160176155.1|607183_608830_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.9	8.2e-292
WP_094409958.1|609125_610692_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001180271.1|610780_611662_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001574526.1|611673_612324_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000427776.1|612316_613297_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001067041.1|613299_614286_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_073392975.1|614336_615806_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000121211.1|615920_616868_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000517177.1|616859_617126_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_160176156.1|617337_618993_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000786746.1|619011_619953_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	9.3e-06
WP_063636406.1|619942_621025_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.4e-18
>prophage 48
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	629619	636430	2848793		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|629619_630765_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047061.1|630875_631745_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353950.1|631803_634413_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044234.1|634615_636430_-	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	8.8e-37
>prophage 49
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	639695	647155	2848793	transposase	Staphylococcus_virus(50.0%)	4	NA	NA
WP_000277741.1|639695_641342_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_000902813.1|641718_642108_-	YisL family protein	NA	NA	NA	NA	NA
WP_000670753.1|642433_643336_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000154949.1|643501_647155_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.3	7.7e-24
>prophage 50
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	657310	664357	2848793		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185311.1|657310_658240_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.5	1.8e-38
WP_160176157.1|658634_659879_-	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA	NA
WP_160176158.1|659987_661175_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.6	1.1e-32
WP_000838047.1|661482_662610_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|662971_663349_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|663763_664357_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 51
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	674291	677919	2848793		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009683.1|674291_675767_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	1.2e-47
WP_000046076.1|675897_677106_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|677559_677919_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 52
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	681962	684631	2848793		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|681962_683177_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129645.1|683173_684631_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
>prophage 53
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	695766	700747	2848793	transposase	Paenibacillus_phage(50.0%)	4	NA	NA
WP_094409958.1|695766_697334_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001074405.1|697503_698901_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|699051_699516_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807671.1|699505_700747_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.1e-110
>prophage 54
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	706976	708002	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571209.1|706976_708002_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	7.2e-28
>prophage 55
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	711111	716289	2848793		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|711111_711468_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147955.1|711611_711932_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|712081_712621_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150036.1|712703_713420_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	6.8e-17
WP_000974455.1|713567_713990_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|714388_714883_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_160176162.1|715038_715656_+	amino acid transporter	NA	NA	NA	NA	NA
WP_016187137.1|715728_716289_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
>prophage 56
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	719694	720938	2848793		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|719694_719895_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001574556.1|720251_720938_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
>prophage 57
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	730394	739151	2848793		Staphylococcus_phage(50.0%)	8	NA	NA
WP_001574560.1|730394_731123_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	4.8e-18
WP_000999096.1|731410_732025_-	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_001085185.1|732990_733455_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_001050041.1|733476_735849_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	1.9e-92
WP_001165967.1|735882_736623_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|736751_736985_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785248.1|737051_737510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|737846_739151_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 58
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	749839	755655	2848793		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|749839_750427_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|750995_751940_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|752048_753044_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369719.1|753040_753952_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134960.1|754719_755655_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	8.4e-84
>prophage 59
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	760052	762899	2848793		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662687.1|760052_762899_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 60
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	766217	767057	2848793		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749385.1|766217_767057_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 61
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	775952	779201	2848793		Streptococcus_phage(50.0%)	3	NA	NA
WP_050961877.1|775952_776594_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.8	1.4e-37
WP_000258151.1|776757_777813_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|778130_779201_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 62
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	788478	811445	2848793		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000616865.1|788478_789240_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
WP_001245566.1|789236_790193_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000876311.1|790179_791151_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_000562498.1|791527_792499_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|792618_794724_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|794686_795085_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068491.1|795886_796753_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930016.1|796772_797273_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_000193750.1|797612_799118_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031788440.1|799195_799297_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429002.1|799387_800305_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_000197262.1|800856_801399_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663016.1|801557_802616_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000180987.1|802855_804370_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589241.1|804362_805340_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.1e-25
WP_000983677.1|805559_807341_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_160176164.1|807352_809233_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.9	6.7e-56
WP_000098285.1|809504_811445_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 63
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	814584	824430	2848793		Pandoravirus(12.5%)	12	NA	NA
WP_001217804.1|814584_815736_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604508.1|815719_816313_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_000446724.1|816663_817332_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|817333_817753_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062968.1|817756_818470_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637686.1|818568_819153_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093552.1|819432_819873_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|820214_820688_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|820662_821349_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244416.1|821348_822404_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702776.1|822475_823459_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000931237.1|823590_824430_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	5.1e-56
>prophage 64
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	831592	882104	2848793	transposase,bacteriocin,tRNA	Staphylococcus_phage(31.25%)	53	NA	NA
WP_001107240.1|831592_832075_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_000216727.1|832248_832701_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001041284.1|832997_834164_-	multidrug efflux MFS transporter NorA	NA	NA	NA	NA	NA
WP_000776010.1|834373_834796_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_001191871.1|834982_835600_+	DUF1361 domain-containing protein	NA	NA	NA	NA	NA
WP_000154465.1|835596_835881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000952030.1|836035_837409_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	34.1	1.2e-46
WP_000005632.1|837494_839048_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_000180420.1|839330_839618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000435104.1|839652_840561_-	aldo/keto reductase family oxidoreductase	NA	NA	NA	NA	NA
WP_000794424.1|840663_841590_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_001283444.1|841816_842260_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000857616.1|842386_844060_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	24.2	2.0e-11
WP_000737163.1|844056_845688_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	2.3e-12
WP_000469883.1|845906_846782_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358501.1|846953_847637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148821.1|847639_848098_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820892.1|848099_848666_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
WP_000638614.1|848760_849303_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000545116.1|849382_849682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000733427.1|849819_850209_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001259673.1|850275_850719_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000842865.1|850845_851535_+	DUF1129 family protein	NA	NA	NA	NA	NA
WP_001105942.1|852197_852872_-|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_000361064.1|852966_853344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000159128.1|853581_853947_+	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000378396.1|853939_856120_+	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000277738.1|856483_858130_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_160176165.1|858196_859630_-	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000069452.1|859644_861690_-	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000690626.1|861956_862532_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000838599.1|862866_863862_-	YeiH family protein	NA	NA	NA	NA	NA
WP_160176166.1|863986_864808_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001791613.1|865109_865202_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000397995.1|865430_865754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000998976.1|866970_867396_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000843733.1|868185_868929_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001002795.1|869478_869574_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000761344.1|869788_870130_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000145511.1|870216_871077_-	replication initiation protein	NA	NA	NA	NA	NA
WP_000273007.1|871441_871942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160176167.1|871988_872336_-	recombinase	NA	NA	NA	NA	NA
WP_001643491.1|872275_872653_-	recombinase	NA	NA	NA	NA	NA
WP_000277741.1|872807_874454_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_000593106.1|874815_875442_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000831610.1|875453_875765_-	YxeA family protein	NA	NA	NA	NA	NA
WP_000713732.1|875768_877703_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000726502.1|877777_878071_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000358995.1|878450_878846_-	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000153633.1|878863_880153_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
WP_160176168.1|880152_880467_-	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	1.4e-38
WP_001035802.1|881182_881395_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|881429_882104_-|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
>prophage 65
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	887408	887882	2848793		Pandoravirus(100.0%)	1	NA	NA
WP_000833480.1|887408_887882_-	cupin	NA	A0A291AU44	Pandoravirus	38.7	4.6e-14
>prophage 66
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	893131	893929	2848793		Lactobacillus_virus(100.0%)	1	NA	NA
WP_000731642.1|893131_893929_+	LysM peptidoglycan-binding domain-containing protein	NA	C1KFN7	Lactobacillus_virus	35.8	2.1e-06
>prophage 67
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	898650	899412	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_160176169.1|898650_899412_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	2.5e-33
>prophage 68
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	903776	904820	2848793		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030763.1|903776_904820_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.1	3.8e-16
>prophage 69
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	911342	912140	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|911342_912140_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 70
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	915367	919326	2848793		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|915367_917095_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793055.1|917515_918811_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|918927_919326_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 71
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	926259	927003	2848793		Indivirus(100.0%)	1	NA	NA
WP_000894458.1|926259_927003_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-12
>prophage 72
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	939868	940429	2848793	integrase	Streptococcus_phage(100.0%)	1	934022:934036	944011:944025
934022:934036	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044966.1|939868_940429_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|939868_940429_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
944011:944025	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 73
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	953525	956879	2848793		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|953525_954536_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001788287.1|955034_955556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180233.1|955583_956879_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 74
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	964410	965733	2848793		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860607.1|964410_965733_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	8.2e-109
>prophage 75
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	977037	977694	2848793		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|977037_977694_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 76
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	981361	984683	2848793		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000382588.1|981361_982738_-	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	23.9	6.7e-21
WP_000347064.1|983282_984683_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	33.0	9.4e-55
>prophage 77
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1008133	1008796	2848793		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1008133_1008796_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 78
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1015384	1016572	2848793		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250820.1|1015384_1016572_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	1.5e-45
>prophage 79
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1019599	1030553	2848793		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1019599_1021681_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1021803_1022274_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1022339_1022753_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1022850_1023105_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001819727.1|1023241_1026838_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	4.3e-67
WP_000918664.1|1027001_1030553_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.2	6.1e-50
>prophage 80
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1034236	1039019	2848793	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1034236_1034785_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1034797_1034980_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001791441.1|1035035_1035179_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872867.1|1035293_1035863_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664740.1|1035943_1036468_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1036467_1037214_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370181.1|1037221_1037626_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631982.1|1037618_1039019_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	2.5e-55
>prophage 81
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1045030	1047487	2848793	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1045030_1047487_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 82
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1066572	1077030	2848793	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1066572_1068060_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_016186812.1|1068112_1068205_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613720.1|1068598_1069075_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154303.1|1069071_1069437_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167936.1|1069414_1070218_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	6.7e-21
WP_000057594.1|1070433_1071366_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1071544_1072426_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1072839_1074933_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1075190_1075730_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176721.1|1075734_1077030_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.3	8.2e-13
>prophage 83
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1086286	1088751	2848793		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1086286_1087252_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252534.1|1087398_1088751_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 84
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1094635	1097733	2848793	tRNA	Hokovirus(50.0%)	2	NA	NA
WP_001051120.1|1094635_1096609_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
WP_000279925.1|1096893_1097733_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 85
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1101639	1102257	2848793		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1101639_1102257_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 86
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1111101	1112799	2848793		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109044.1|1111101_1112799_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 87
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1129436	1135673	2848793		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170274.1|1129436_1130441_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
WP_000825534.1|1130774_1131617_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467992.1|1131653_1132313_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569267.1|1132316_1133342_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	1.4e-31
WP_001036658.1|1133632_1134775_-	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA	NA
WP_160176235.1|1134767_1135673_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.1	2.7e-47
>prophage 88
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1159210	1161992	2848793		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072632.1|1159210_1160443_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.9	2.7e-45
WP_000028598.1|1160435_1161992_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	1.7e-286
>prophage 89
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1173479	1173806	2848793	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001799349.1|1173479_1173806_+|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	85.4	4.3e-11
>prophage 90
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1177113	1180146	2848793		Hokovirus(50.0%)	2	NA	NA
WP_000424963.1|1177113_1178655_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1178679_1180146_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 91
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1189246	1190770	2848793		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930503.1|1189246_1190770_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.2	5.5e-40
>prophage 92
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1199921	1220880	2848793	coat,terminase,integrase	Staphylococcus_phage(72.73%)	30	1199198:1199215	1214254:1214271
1199198:1199215	attL	ATATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000813311.1|1199921_1200434_-	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
WP_073392942.1|1200551_1200989_-	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000801980.1|1201130_1202099_-	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_001293071.1|1202375_1202945_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_001656917.1|1202941_1203154_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_000771361.1|1203285_1203813_-|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
WP_000214170.1|1203865_1204519_-	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_001190614.1|1204549_1204891_-	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_115300115.1|1205426_1206068_-	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	94.8	5.0e-112
WP_001003076.1|1206069_1206333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115300114.1|1206953_1208324_-	DNA primase	NA	A0A2H4JBE3	uncultured_Caudovirales_phage	94.5	1.0e-255
WP_115300113.1|1208335_1209205_-	mobile element-associated protein	NA	A0A2H4JEH3	uncultured_Caudovirales_phage	76.5	2.7e-132
WP_115300112.1|1209268_1209589_-	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	50.9	3.8e-20
WP_001038252.1|1209589_1209949_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001058496.1|1209950_1210163_-	hypothetical protein	NA	A0A1W6JPA6	Staphylococcus_phage	70.6	1.7e-16
WP_000784893.1|1210155_1210302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115300111.1|1210313_1210586_-	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	96.7	4.2e-44
WP_044292240.1|1210586_1210799_-	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	80.0	8.9e-26
WP_115300110.1|1210984_1211704_+	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	30.6	1.4e-17
WP_000270135.1|1211978_1213193_+|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000400841.1|1213305_1214025_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000897044.1|1214256_1214499_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
1214254:1214271	attR	ATATTATTGTTCTTCTTT	NA	NA	NA	NA
WP_000934799.1|1214550_1215054_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1215074_1215371_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1215614_1215806_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218732.1|1215891_1216989_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1217000_1217204_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373076.1|1217233_1218115_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001573568.1|1218268_1219114_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655687.1|1219776_1220880_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 93
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1230801	1231644	2848793		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209478.1|1230801_1231644_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.2	4.5e-12
>prophage 94
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1253054	1255789	2848793		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280814.1|1253054_1254077_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	6.7e-10
WP_160176236.1|1254054_1254999_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449073.1|1254988_1255789_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	44.4	1.5e-41
>prophage 95
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1274026	1274704	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911024.1|1274026_1274704_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	1.2e-31
>prophage 96
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1288756	1293205	2848793		Mycobacterium_phage(100.0%)	1	NA	NA
WP_063636346.1|1288756_1293205_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.7	1.7e-28
>prophage 97
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1303808	1305470	2848793		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000570080.1|1303808_1304468_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	5.8e-23
WP_000736790.1|1304519_1305470_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 98
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1314277	1315714	2848793		Pandoravirus(100.0%)	1	NA	NA
WP_000163995.1|1314277_1315714_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.0	1.3e-30
>prophage 99
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1322222	1326766	2848793		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925396.1|1322222_1323962_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.0e-62
WP_000608835.1|1324227_1324902_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975347.1|1325041_1326766_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 100
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1336636	1337680	2848793		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645611.1|1336636_1337680_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	6.0e-14
>prophage 101
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1344896	1346426	2848793		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|1344896_1346426_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 102
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1356111	1357617	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008395.1|1356111_1357617_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 103
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1368578	1373937	2848793		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1368578_1370828_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837114.1|1371415_1372384_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127979.1|1372380_1373937_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 104
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1384248	1386307	2848793		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818914.1|1384248_1385346_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166911.1|1385728_1386307_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	43.0	1.6e-13
>prophage 105
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1394119	1395712	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_000067363.1|1394119_1395712_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	5.4e-22
>prophage 106
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1411804	1412989	2848793		Klosneuvirus(100.0%)	1	NA	NA
WP_001084444.1|1411804_1412989_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.6	2.4e-35
>prophage 107
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1417847	1428131	2848793		Tupanvirus(50.0%)	3	NA	NA
WP_000605273.1|1417847_1425023_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.9	3.4e-68
WP_160176183.1|1425469_1426720_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706134.1|1427105_1428131_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
>prophage 108
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1431667	1434666	2848793		Bacillus_virus(50.0%)	4	NA	NA
WP_000590840.1|1431667_1432408_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.6	6.5e-39
WP_000171926.1|1432749_1433262_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356967.1|1433441_1433645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013476.1|1433706_1434666_-	cation transporter	NA	A0A1V0SED0	Indivirus	33.6	2.8e-10
>prophage 109
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1438007	1440492	2848793		Catovirus(50.0%)	2	NA	NA
WP_000723445.1|1438007_1439153_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	3.2e-24
WP_000779509.1|1439229_1440492_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	2.5e-22
>prophage 110
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1447509	1454074	2848793		Catovirus(50.0%)	6	NA	NA
WP_000413167.1|1447509_1448634_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	3.9e-128
WP_001028294.1|1448637_1449747_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1449759_1450788_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940769.1|1450777_1452601_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.4	3.0e-29
WP_000565301.1|1452620_1453385_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037317.1|1453387_1454074_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
>prophage 111
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1458097	1459273	2848793		Clostridium_phage(100.0%)	1	NA	NA
WP_000469818.1|1458097_1459273_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.9	5.2e-30
>prophage 112
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1464731	1465505	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078278.1|1464731_1465505_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	6.4e-13
>prophage 113
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1473391	1473991	2848793		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1473391_1473991_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 114
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1478925	1484020	2848793		Bodo_saltans_virus(50.0%)	5	NA	NA
WP_160176185.1|1478925_1479906_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2H4UUK0	Bodo_saltans_virus	37.2	3.9e-47
WP_000183771.1|1480240_1481017_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414632.1|1481227_1481854_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1482049_1482814_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223717.1|1482817_1484020_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.3	5.1e-09
>prophage 115
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1492286	1496496	2848793		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1492286_1493267_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045124.1|1493497_1494490_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000925002.1|1494505_1495501_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136645.1|1495497_1496496_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.2	2.6e-14
>prophage 116
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1506807	1507755	2848793	transposase	Staphylococcus_prophage(100.0%)	1	NA	NA
WP_000121211.1|1506807_1507755_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
>prophage 117
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1529618	1534953	2848793	transposase	Acidithiobacillus_phage(33.33%)	5	NA	NA
WP_000649665.1|1529618_1531319_-	AAA domain-containing protein	NA	K4I1H4	Acidithiobacillus_phage	26.8	4.1e-20
WP_001794509.1|1531608_1531983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000121211.1|1532168_1533116_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000370465.1|1533120_1533636_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088356251.1|1533823_1534953_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.0	6.4e-78
>prophage 118
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1540833	1550829	2848793		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|1540833_1541634_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104171.1|1542021_1542810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060146.1|1542810_1544145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871610.1|1544137_1545964_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	2.1e-30
WP_000101976.1|1545976_1546678_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|1547867_1549151_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|1549428_1550829_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 119
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1557511	1566547	2848793	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884337.1|1557511_1558798_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177483.1|1559175_1560690_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	4.4e-90
WP_000449218.1|1561015_1561828_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819098.1|1561915_1564576_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.8	4.6e-119
WP_000255583.1|1564612_1566547_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	4.4e-143
>prophage 120
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1576634	1579934	2848793		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742840.1|1576634_1577474_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.4	1.4e-05
WP_000491382.1|1577968_1578322_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|1578389_1578785_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054111.1|1579037_1579607_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	34.8	2.8e-05
WP_001059079.1|1579733_1579934_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 121
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1585727	1586486	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|1585727_1586486_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 122
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1603629	1605342	2848793		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138663.1|1603629_1605342_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	5.4e-20
>prophage 123
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1610970	1611984	2848793		Faustovirus(100.0%)	1	NA	NA
WP_000639198.1|1610970_1611984_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.2	8.2e-08
>prophage 124
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1624375	1625068	2848793		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185860.1|1624375_1625068_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 125
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1648943	1650803	2848793		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125631.1|1648943_1650803_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 126
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1676494	1678245	2848793		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143418.1|1676494_1677382_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	7.4e-05
WP_000923764.1|1677489_1678245_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.8e-31
>prophage 127
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1681682	1682180	2848793		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|1681682_1682180_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 128
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1687230	1689614	2848793		Enterococcus_phage(100.0%)	2	NA	NA
WP_160176189.1|1687230_1689081_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.9	1.3e-234
WP_000173336.1|1689077_1689614_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	47.5	1.1e-40
>prophage 129
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1694490	1704601	2848793	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|1694490_1696200_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|1696477_1696690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028789.1|1696969_1697413_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172333.1|1697606_1699205_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.6	2.6e-77
WP_001793854.1|1699264_1699465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|1699891_1701388_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031407.1|1701580_1702471_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237625.1|1702593_1703010_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160176190.1|1703263_1704601_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.4	5.7e-17
>prophage 130
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1732756	1735956	2848793		Staphylococcus_phage(50.0%)	2	NA	NA
WP_000751265.1|1732756_1733458_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.8	2.1e-39
WP_000379825.1|1734144_1735956_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 131
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1744395	1749126	2848793		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161364.1|1744395_1745394_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
WP_000076662.1|1745483_1745690_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024137.1|1746717_1749126_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	2.9e-128
>prophage 132
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1758367	1761357	2848793	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001063330.1|1758367_1760473_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.5	6.9e-118
WP_000262597.1|1760835_1761357_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
>prophage 133
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1767781	1774164	2848793		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062662.1|1767781_1769521_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473682.1|1769820_1771887_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206033.1|1772266_1772677_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|1772718_1773075_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228158.1|1773195_1774164_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	3.1e-12
>prophage 134
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1782988	1783981	2848793		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161541.1|1782988_1783981_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	9.7e-38
>prophage 135
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1793397	1794093	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382892.1|1793397_1794093_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	2.0e-37
>prophage 136
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1812692	1819868	2848793		Bacillus_phage(66.67%)	6	NA	NA
WP_000721330.1|1812692_1813559_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	4.4e-79
WP_001573690.1|1813685_1813994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000678764.1|1814137_1814404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001793882.1|1814687_1816496_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.5	1.0e-93
WP_000755954.1|1816612_1817005_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088715.1|1817006_1819868_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	1.2e-27
>prophage 137
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1824311	1825007	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_115300194.1|1824311_1825007_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	6.6e-09
>prophage 138
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1830683	1831502	2848793		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_160176194.1|1830683_1831502_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	6.4e-11
>prophage 139
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1839567	1841125	2848793		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173876.1|1839567_1840383_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	6.1e-14
WP_000590515.1|1840375_1841125_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
>prophage 140
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1847358	1851785	2848793		Bacillus_phage(50.0%)	4	NA	NA
WP_000923514.1|1847358_1848021_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	34.5	2.2e-17
WP_000072154.1|1848013_1848790_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026190.1|1849183_1850371_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700902.1|1850432_1851785_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	3.0e-13
>prophage 141
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1855178	1856405	2848793		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948990.1|1855178_1856405_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 142
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1874780	1880987	2848793		Bacillus_phage(66.67%)	5	NA	NA
WP_001176855.1|1874780_1875923_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	2.6e-55
WP_000779351.1|1876190_1876577_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482647.1|1876710_1876818_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064829.1|1877465_1879229_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	1.6e-35
WP_000486505.1|1879253_1880987_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	1.5e-30
>prophage 143
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1884448	1890202	2848793		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971554.1|1884448_1885564_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.9	7.1e-21
WP_000286868.1|1885574_1886267_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_160176195.1|1886277_1886745_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_001056917.1|1886796_1887774_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	2.4e-142
WP_000916697.1|1887775_1888723_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	2.1e-138
WP_000594516.1|1889272_1890202_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
>prophage 144
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1898095	1898827	2848793		Bacillus_virus(100.0%)	1	NA	NA
WP_000615467.1|1898095_1898827_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	1.3e-23
>prophage 145
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1915691	1917251	2848793		Escherichia_phage(100.0%)	1	NA	NA
WP_000692650.1|1915691_1917251_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	3.4e-21
>prophage 146
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1927982	1929629	2848793	transposase	Staphylococcus_virus(100.0%)	1	NA	NA
WP_000277741.1|1927982_1929629_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 147
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1940570	1941605	2848793		Bacillus_virus(100.0%)	1	NA	NA
WP_000655979.1|1940570_1941605_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.2	1.7e-16
>prophage 148
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1952068	1958625	2848793		Staphylococcus_phage(25.0%)	8	NA	NA
WP_000388431.1|1952068_1952797_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	6.7e-28
WP_000372857.1|1952930_1953494_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000793166.1|1953670_1954126_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000977031.1|1954122_1954566_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000477322.1|1954728_1956102_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	1.1e-12
WP_000249492.1|1956094_1956769_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	44.7	8.0e-52
WP_000761409.1|1956904_1957960_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229922.1|1957959_1958625_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.3	7.2e-37
>prophage 149
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1962362	1963571	2848793		Salmonella_phage(100.0%)	1	NA	NA
WP_000999130.1|1962362_1963571_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.5	3.0e-33
>prophage 150
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1976227	1977127	2848793		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524842.1|1976227_1977127_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	2.7e-15
>prophage 151
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1984484	1984904	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_000920241.1|1984484_1984904_-	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	7.7e-37
>prophage 152
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1990595	1991477	2848793		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730056.1|1990595_1991477_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	1.7e-62
>prophage 153
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	1999356	1999992	2848793		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285452.1|1999356_1999992_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.6	7.1e-10
>prophage 154
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2012996	2017263	2848793		Staphylococcus_phage(50.0%)	4	NA	NA
WP_072460394.1|2012996_2013635_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	47.4	4.5e-36
WP_000684154.1|2014243_2015368_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	1.6e-12
WP_000417008.1|2015459_2016413_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000737700.1|2016771_2017263_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 155
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2021183	2021993	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717395.1|2021183_2021993_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 156
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2040966	2041572	2848793		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2040966_2041572_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 157
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2053539	2056707	2848793		Leptospira_phage(100.0%)	1	NA	NA
WP_000592290.1|2053539_2056707_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.0	4.3e-63
>prophage 158
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2079886	2083496	2848793	transposase	Paenibacillus_phage(33.33%)	3	NA	NA
WP_094409958.1|2079886_2081454_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000389651.1|2081829_2082639_+	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.8	1.4e-18
WP_000586768.1|2082635_2083496_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	7.4e-10
>prophage 159
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2086537	2095100	2848793		Mycobacterium_phage(33.33%)	8	NA	NA
WP_000204271.1|2086537_2087974_+	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	5.5e-58
WP_000136272.1|2088222_2088402_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791584.1|2089051_2089234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130145.1|2089703_2091368_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	4.7e-45
WP_000179061.1|2091404_2092109_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769709.1|2092499_2092925_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044369.1|2093219_2094035_+	hydrolase	NA	NA	NA	NA	NA
WP_001044451.1|2094245_2095100_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	34.8	1.3e-06
>prophage 160
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2098478	2101541	2848793		Staphylococcus_phage(50.0%)	5	NA	NA
WP_001015495.1|2098478_2099327_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
WP_001573519.1|2099547_2099673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001293423.1|2099627_2099921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000333457.1|2099934_2100543_+	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001573518.1|2100800_2101541_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	7.3e-14
>prophage 161
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2107861	2109274	2848793		Pandoravirus(100.0%)	1	NA	NA
WP_000169223.1|2107861_2109274_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	5.0e-48
>prophage 162
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2113091	2115879	2848793	transposase	Staphylococcus_prophage(50.0%)	2	NA	NA
WP_000121211.1|2113091_2114039_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_000792332.1|2114316_2115879_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	3.5e-18
>prophage 163
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2126082	2127051	2848793		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2126082_2127051_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 164
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2142851	2143760	2848793		Klosneuvirus(100.0%)	1	NA	NA
WP_000162591.1|2142851_2143760_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.7	1.2e-26
>prophage 165
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2161002	2168420	2848793	transposase	Paramecium_bursaria_Chlorella_virus(33.33%)	6	NA	NA
WP_000334466.1|2161002_2162808_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.6e-97
WP_000908186.1|2163039_2163822_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	5.7e-09
WP_000370937.1|2163889_2164747_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_001792784.1|2165405_2165564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073392962.1|2166243_2166348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000277741.1|2166773_2168420_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 166
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2176926	2182423	2848793	transposase	Clostridium_phage(33.33%)	5	NA	NA
WP_000070866.1|2176926_2177370_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2177490_2178201_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083335.1|2178515_2179178_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_094409958.1|2179478_2181046_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001242308.1|2181121_2182423_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.7	1.4e-132
>prophage 167
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2190356	2191967	2848793		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2190356_2191967_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 168
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2199770	2207522	2848793		Bacillus_virus(25.0%)	9	NA	NA
WP_000273356.1|2199770_2200370_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460244.1|2200370_2201447_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248730.1|2201433_2202270_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_001801520.1|2202302_2203400_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
WP_000697334.1|2203396_2203816_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_160176206.1|2203912_2204446_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2204472_2205711_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2205738_2206368_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723407.1|2206391_2207522_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.0e-27
>prophage 169
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2218074	2218470	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_000932696.1|2218074_2218470_+	single-stranded DNA-binding protein	NA	A0A1B1PAE7	Bacillus_phage	36.8	3.0e-14
>prophage 170
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2224579	2225227	2848793		Moumouvirus(100.0%)	1	NA	NA
WP_001187612.1|2224579_2225227_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	4.7e-09
>prophage 171
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2233419	2234940	2848793		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178940.1|2233419_2234940_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 172
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2240614	2242642	2848793		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_160176208.1|2240614_2242642_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	3.0e-25
>prophage 173
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2247792	2251176	2848793		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621176.1|2247792_2248155_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2248503_2249505_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2249623_2249950_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190825.1|2249951_2250431_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041107.1|2250405_2251176_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 174
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2265289	2270013	2848793		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094572.1|2265289_2266819_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.6	9.4e-08
WP_072399972.1|2266848_2267868_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2267989_2268244_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047828.1|2268243_2270013_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	4.1e-63
>prophage 175
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2273773	2287848	2848793	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159047.1|2273773_2274799_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000106312.1|2275112_2276723_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	5.1e-20
WP_001791590.1|2276817_2276946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602046.1|2277090_2279019_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.2e-53
WP_001283612.1|2279271_2279907_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_073392939.1|2280263_2281292_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581078.1|2281351_2281576_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052261.1|2281784_2283035_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	9.0e-41
WP_000790325.1|2283218_2284169_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001791588.1|2284317_2285802_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	5.2e-19
WP_001253292.1|2285798_2286758_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2287131_2287848_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 176
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2294989	2298311	2848793		uncultured_virus(50.0%)	5	NA	NA
WP_000917289.1|2294989_2295274_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240651.1|2295349_2296966_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
WP_000201397.1|2297507_2297687_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001573769.1|2297683_2297980_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	40.4	6.7e-11
WP_001573771.1|2297969_2298311_+	hypothetical protein	NA	C8CH40	Staphylococcus_phage	46.0	4.1e-20
>prophage 177
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2302289	2304386	2848793		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000791402.1|2302289_2303345_+	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
WP_000595617.1|2303366_2304386_+	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
>prophage 178
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2308392	2315370	2848793	transposase	Staphylococcus_phage(66.67%)	8	NA	NA
WP_000277741.1|2308392_2310039_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001068528.1|2310286_2311573_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|2311772_2311871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681966.1|2312112_2312289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|2312546_2312927_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991315.1|2312923_2313820_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645732.1|2313820_2314501_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|2314497_2315370_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 179
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2320615	2321017	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|2320615_2321017_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 180
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2325214	2327245	2848793		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|2325214_2325775_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275719.1|2326147_2327245_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
>prophage 181
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2331275	2333559	2848793		Bacillus_virus(100.0%)	2	NA	NA
WP_000284434.1|2331275_2332745_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
WP_000040861.1|2332737_2333559_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 182
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2337249	2344027	2848793		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|2337249_2338545_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|2338653_2338956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272063.1|2339138_2339831_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|2339827_2342020_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774552.1|2342023_2344027_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
>prophage 183
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2351256	2356284	2848793		Catovirus(33.33%)	5	NA	NA
WP_001231458.1|2351256_2352204_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_001147874.1|2352284_2353646_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	43.0	1.5e-102
WP_000548777.1|2353815_2354346_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140179.1|2354592_2355663_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|2355729_2356284_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 184
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2359737	2360151	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001643743.1|2359737_2360151_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.5	3.0e-17
>prophage 185
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2365132	2365762	2848793		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|2365132_2365762_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 186
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2371791	2443029	2848793	portal,capsid,tail,head,holin,tRNA,plate,terminase,integrase	Staphylococcus_phage(75.81%)	82	2368311:2368328	2402026:2402043
2368311:2368328	attL	GTTAATCAAGGATTATTA	NA	NA	NA	NA
WP_001145732.1|2371791_2372838_-|integrase	site-specific integrase	integrase	A0A0H3U2V9	Staphylococcus_phage	100.0	4.2e-201
WP_000183249.1|2372907_2373378_-	hypothetical protein	NA	A0A0H3U2S7	Staphylococcus_phage	100.0	4.1e-55
WP_001102446.1|2373370_2373892_-	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	99.4	1.3e-97
WP_000525004.1|2374075_2374537_-	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_160176214.1|2374549_2374864_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	99.0	1.4e-51
WP_001121116.1|2375015_2375252_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000394410.1|2375537_2376020_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000933365.1|2376464_2376650_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_031783118.1|2376651_2377392_+	oxidoreductase	NA	B7T097	Staphylococcus_virus	100.0	6.3e-135
WP_000395455.1|2377567_2377798_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000594789.1|2377868_2378090_+	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000066011.1|2378082_2378244_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000291090.1|2378340_2378601_+	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_001077280.1|2378610_2378832_+	DUF2483 domain-containing protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000139720.1|2378824_2379448_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934782.1|2379447_2379876_+	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	1.7e-63
WP_001121805.1|2379889_2380558_+	hypothetical protein	NA	Q4ZD97	Staphylococcus_virus	98.2	1.1e-125
WP_000240900.1|2380557_2381322_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.4	5.0e-143
WP_123092858.1|2381314_2382043_+	alpha/beta hydrolase	NA	Q4ZD94	Staphylococcus_virus	94.3	2.0e-117
WP_000803056.1|2382053_2382833_+	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_001123688.1|2383000_2383222_+	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_015997090.1|2383231_2383636_+	DUF1064 domain-containing protein	NA	C5I647	Staphylococcus_phage	100.0	1.6e-68
WP_160176215.1|2383640_2383826_+	DUF3113 family protein	NA	B2ZYW2	Staphylococcus_phage	98.4	9.2e-27
WP_115283869.1|2383826_2384186_+	hypothetical protein	NA	B2ZYW3	Staphylococcus_phage	98.3	1.9e-60
WP_001126839.1|2384186_2384435_+	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	100.0	2.5e-43
WP_001614120.1|2384475_2384730_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	97.6	5.5e-38
WP_078064235.1|2384692_2384887_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	100.0	8.2e-26
WP_064132885.1|2384879_2385386_+	dUTPase	NA	Q4ZDP4	Staphylococcus_virus	99.4	1.1e-90
WP_001209217.1|2385422_2385596_+	hypothetical protein	NA	A0A2I6PEA8	Staphylococcus_phage	100.0	3.6e-25
WP_000195781.1|2385612_2385849_+	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	96.2	5.3e-35
WP_000483477.1|2385873_2386110_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_042907201.1|2386102_2386276_+	transcriptional regulator	NA	A0A0H3U4U1	Staphylococcus_phage	96.5	3.7e-22
WP_000286968.1|2386276_2386678_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|2387030_2387525_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037578.1|2387517_2388741_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_042907196.1|2388737_2390162_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	99.8	2.4e-271
WP_042907193.1|2390130_2391084_+	hypothetical protein	NA	A0A0N7E0U6	Staphylococcus_phage	99.1	4.3e-176
WP_000346033.1|2391085_2391292_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_001019220.1|2391394_2391979_+	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	99.5	2.8e-77
WP_042907191.1|2391995_2392910_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	99.3	5.7e-170
WP_160176216.1|2393070_2393421_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	99.1	7.0e-60
WP_000483041.1|2393432_2393768_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151323.1|2393754_2394162_+	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000270190.1|2394174_2394600_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
WP_000057582.1|2394600_2395158_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|2395223_2395730_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880588.1|2395774_2396059_+	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	98.9	1.5e-44
WP_160176217.1|2396062_2399206_+|terminase	terminase	terminase	A0A059T7Q4	Staphylococcus_phage	93.7	0.0e+00
WP_042907189.1|2399220_2400162_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	99.4	2.2e-180
WP_015984523.1|2400172_2402059_+	hypothetical protein	NA	A1KXA8	Staphylococcus_virus	100.0	0.0e+00
2402026:2402043	attR	GTTAATCAAGGATTATTA	NA	NA	NA	NA
WP_042907188.1|2402071_2403970_+	hypothetical protein	NA	Q4ZBH8	Staphylococcus_virus	99.2	0.0e+00
WP_000634521.1|2403969_2405793_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	100.0	0.0e+00
WP_000705896.1|2405792_2406170_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000782200.1|2406173_2406347_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466777.1|2406387_2406687_+	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_042907185.1|2406823_2408698_+	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	99.5	0.0e+00
WP_042907183.1|2408710_2409949_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.5	7.7e-210
WP_000398862.1|2409953_2410349_+	hypothetical protein	NA	Q4ZBW9	Staphylococcus_virus	100.0	1.6e-68
WP_001556691.1|2410404_2410842_+|holin	phage holin	holin	B2ZZ05	Staphylococcus_phage	99.3	5.3e-73
WP_042907182.1|2410822_2412268_+	CHAP domain-containing protein	NA	A0A0H4ITZ3	Staphylococcus_phage	99.6	1.1e-295
WP_103147036.1|2412637_2412739_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001005407.1|2413065_2413227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163281.1|2413356_2413872_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000830380.1|2414212_2415022_+	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_001124422.1|2415282_2416101_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000435806.1|2416078_2416393_+	YfhH family protein	NA	NA	NA	NA	NA
WP_000535849.1|2416407_2417925_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000886472.1|2417933_2418770_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379091.1|2419030_2420008_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000284755.1|2420159_2421197_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000251252.1|2421499_2422042_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000597238.1|2422332_2424069_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_001236371.1|2424259_2425354_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001011603.1|2425646_2426936_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000939530.1|2427016_2427472_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_000869463.1|2427477_2428428_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000110011.1|2428524_2428971_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000063551.1|2437783_2438845_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649898.1|2439103_2440561_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|2440547_2441276_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|2441411_2442554_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|2442558_2443029_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 187
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2451931	2452276	2848793		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|2451931_2452276_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 188
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2461864	2462605	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|2461864_2462605_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 189
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2470467	2474747	2848793		Staphylococcus_phage(80.0%)	5	NA	NA
WP_147612242.1|2470467_2471250_+	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	38.6	8.7e-34
WP_000821649.1|2471531_2472251_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	34.6	4.9e-23
WP_000721567.1|2472285_2473014_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.8	1.3e-28
WP_000764684.1|2473167_2473953_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	2.9e-45
WP_001235656.1|2473991_2474747_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	40.8	2.3e-39
>prophage 190
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2478001	2548292	2848793	tRNA,protease	Staphylococcus_phage(93.02%)	64	NA	NA
WP_000711499.1|2478001_2479348_-	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
WP_000595635.1|2479594_2480110_-	membrane protein	NA	NA	NA	NA	NA
WP_001039022.1|2481124_2481844_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_001038766.1|2481967_2482684_+|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001038734.1|2483729_2484446_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038742.1|2484615_2485335_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_160176218.1|2485514_2487254_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	3.5e-285
WP_000413389.1|2488437_2490255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|2490516_2490816_-	secretion protein	NA	NA	NA	NA	NA
WP_001053714.1|2490830_2492441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000619920.1|2492483_2492933_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001819963.1|2493160_2493520_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182553.1|2493645_2496066_-	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_000731421.1|2497032_2497476_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_160176219.1|2497475_2497919_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791232.1|2498093_2498195_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|2498317_2498413_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000747804.1|2498863_2499310_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|2499502_2500072_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_001093574.1|2500071_2501439_+	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000414222.1|2501587_2502160_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627550.1|2502257_2502602_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000669038.1|2502642_2503269_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000070654.1|2503344_2504340_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_001794016.1|2504420_2505071_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_016186903.1|2505372_2505828_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_000348372.1|2505986_2507465_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_000778539.1|2507469_2508471_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000718107.1|2508467_2508725_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672010.1|2508790_2509264_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_001801476.1|2509268_2510015_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000109909.1|2510307_2511900_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933819.1|2512271_2513465_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366165.1|2513589_2514498_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000453316.1|2514709_2515543_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	1.2e-158
WP_000623481.1|2515792_2516146_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_001200542.1|2516142_2516508_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091444.1|2516762_2517065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2517323_2518037_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492901.1|2518494_2519115_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168914.1|2519281_2519917_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030476.1|2520214_2520658_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001152695.1|2520644_2521088_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671059.1|2521200_2521671_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_000384171.1|2521869_2522094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2522369_2523224_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989104.1|2523310_2524603_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_000221181.1|2524602_2524917_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
WP_001261683.1|2525559_2527062_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_001819953.1|2527554_2528586_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_000493891.1|2528592_2529225_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001159032.1|2529235_2530417_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008556.1|2530429_2530894_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
WP_001196351.1|2531015_2532017_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_014937042.1|2532128_2532248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266099.1|2532250_2533078_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|2533650_2534052_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764425.1|2534170_2534734_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000526541.1|2534730_2535684_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_001025064.1|2535793_2536975_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001108722.1|2537266_2539681_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.8	0.0e+00
WP_000836472.1|2539702_2540014_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_160176220.1|2540337_2546907_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.7	1.7e-295
WP_000284993.1|2547023_2548292_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	5.9e-56
>prophage 191
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2556429	2560365	2848793		Salmonella_phage(50.0%)	4	NA	NA
WP_000733283.1|2556429_2557275_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
WP_001096376.1|2557380_2559138_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284656.1|2559127_2559508_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690628.1|2559771_2560365_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
>prophage 192
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2565948	2571318	2848793		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|2565948_2566806_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048374.1|2566834_2567473_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118301.1|2567493_2571318_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 193
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2579890	2581597	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862084.1|2579890_2581597_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 194
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2588210	2590841	2848793	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|2588210_2589473_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279341.1|2589566_2590841_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 195
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2594609	2598744	2848793		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808837.1|2594609_2596214_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291426.1|2596200_2597361_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553919.1|2597474_2597921_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174275.1|2598000_2598744_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	8.3e-18
>prophage 196
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2616326	2619524	2848793		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226930.1|2616326_2619524_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	5.5e-135
>prophage 197
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2624456	2626214	2848793		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|2624456_2626214_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 198
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2631097	2639262	2848793		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080025.1|2631097_2631799_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_160176239.1|2631801_2633463_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.0	1.7e-34
WP_000849445.1|2633963_2635451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038301.1|2635743_2638374_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.7	1.8e-46
WP_001114454.1|2638389_2639262_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
>prophage 199
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2643176	2654330	2848793	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|2643176_2644097_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_016186894.1|2644189_2644285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|2644509_2646447_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049150.1|2646873_2648367_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791219.1|2648595_2649123_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	5.3e-11
WP_001125540.1|2649151_2649352_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|2649398_2649755_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032653.1|2649896_2650505_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	36.4	1.7e-21
WP_001280014.1|2650523_2651453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|2651457_2651568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127572.1|2651615_2652917_+	trigger factor	NA	NA	NA	NA	NA
WP_000472293.1|2653067_2654330_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
>prophage 200
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2663896	2666527	2848793	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425358.1|2663896_2666527_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	3.7e-153
>prophage 201
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2676507	2712105	2848793	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005767.1|2676507_2677512_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|2677513_2678539_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|2678561_2679701_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|2679719_2679980_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749802.1|2680254_2682534_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595001.1|2682736_2685010_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000364542.1|2685031_2685550_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058583.1|2685977_2688167_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869979.1|2688178_2688631_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|2688627_2689503_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|2689963_2691226_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044796.1|2691241_2693008_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001791215.1|2693340_2693469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682640.1|2693468_2694242_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102741.1|2694402_2695677_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	6.3e-106
WP_000704122.1|2695761_2696184_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|2696283_2696466_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000008061.1|2696505_2696652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985898.1|2696888_2697902_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409167.1|2698211_2699354_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000066097.1|2699354_2700473_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567025.1|2701154_2701823_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283316.1|2701824_2704302_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734077.1|2704644_2707275_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|2707337_2707598_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|2707601_2708030_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|2708044_2708353_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342267.1|2708637_2709276_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|2709278_2710202_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|2710213_2711482_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|2711481_2712105_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 202
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2728569	2734733	2848793		Bacillus_phage(33.33%)	5	NA	NA
WP_000439692.1|2728569_2729031_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953291.1|2729089_2731237_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	9.1e-33
WP_001282570.1|2731293_2732268_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|2732312_2732564_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|2732909_2734733_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 203
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2738168	2741276	2848793		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|2738168_2740001_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119020.1|2740136_2741276_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.5	6.8e-27
>prophage 204
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2747745	2748693	2848793		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117769.1|2747745_2748693_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	4.9e-47
>prophage 205
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2751747	2765475	2848793	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030080.1|2751747_2753139_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001794939.1|2753473_2754097_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|2754107_2754926_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217253.1|2754986_2756786_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_001283055.1|2757009_2758116_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624581.1|2758246_2758924_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683921.1|2758926_2760027_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_001062173.1|2760140_2761487_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000924211.1|2761496_2762387_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|2762512_2763298_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564316.1|2763339_2764203_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|2764189_2764600_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|2764875_2765475_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 206
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2771647	2772271	2848793		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|2771647_2772271_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 207
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2777815	2780627	2848793		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_063636320.1|2777815_2779162_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.9	2.1e-64
WP_000202178.1|2779154_2780627_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.1	1.4e-80
>prophage 208
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2788146	2794716	2848793		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|2788146_2789484_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159866.1|2789476_2789707_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183386.1|2789684_2790566_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	5.8e-10
WP_001124985.1|2790996_2791449_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942216.1|2791464_2793144_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291540.1|2793294_2794716_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	6.6e-40
>prophage 209
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2801544	2805133	2848793	transposase	Synechococcus_phage(50.0%)	2	NA	NA
WP_000193707.1|2801544_2802951_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
WP_094409958.1|2803565_2805133_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 210
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2811961	2813446	2848793		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|2811961_2813446_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 211
NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2848793	2819110	2848474	2848793	terminase,integrase	Staphylococcus_phage(80.49%)	46	2815165:2815179	2839780:2839794
2815165:2815179	attL	TTCATCTTTAGATTT	NA	NA	NA	NA
WP_000447733.1|2819110_2819998_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183424.1|2820075_2820582_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273367.1|2820673_2821405_+	segregation and condensation protein A	NA	NA	NA	NA	NA
WP_000368652.1|2821397_2821940_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|2821932_2822670_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|2822802_2823528_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987777.1|2823508_2825260_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_001574168.1|2825511_2826444_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_160176228.1|2826430_2828473_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	43.2	1.5e-37
WP_160176229.1|2828515_2829721_-|integrase	site-specific integrase	integrase	A0A2I6PEZ6	Staphylococcus_phage	99.8	4.5e-223
WP_001166482.1|2829846_2830470_+	hypothetical protein	NA	B7T0F3	Staphylococcus_virus	99.5	9.8e-105
WP_000705240.1|2830615_2830798_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_000511090.1|2830868_2831600_-	helix-turn-helix transcriptional regulator	NA	S4SVC5	Staphylococcus_phage	99.2	1.3e-132
WP_000213811.1|2831750_2831963_+	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_160176230.1|2832010_2832454_+	hypothetical protein	NA	A7TWF2	Staphylococcus_phage	99.3	5.8e-75
WP_000362644.1|2832658_2832871_-	hypothetical protein	NA	D2JGJ1	Staphylococcus_phage	100.0	7.6e-33
WP_001148860.1|2832940_2833138_+	hypothetical protein	NA	A7TWF5	Staphylococcus_phage	100.0	4.6e-24
WP_000773059.1|2833124_2833505_-	DUF2513 domain-containing protein	NA	Q4ZCQ5	Staphylococcus_virus	100.0	5.8e-68
WP_160176231.1|2833571_2833817_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	98.8	1.9e-40
WP_001128433.1|2833785_2834151_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001097552.1|2834205_2834421_+	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	100.0	1.9e-31
WP_001124160.1|2834445_2834709_+	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_001285954.1|2834721_2834883_+	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_000175000.1|2834961_2835285_+	hypothetical protein	NA	A0A2I6PDL5	Staphylococcus_phage	100.0	1.3e-52
WP_000985986.1|2835299_2835662_+	hypothetical protein	NA	Q4ZCP8	Staphylococcus_virus	100.0	2.2e-56
WP_000762534.1|2835658_2836825_+	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	99.7	7.0e-221
WP_000647288.1|2836850_2837405_+	DUF2815 family protein	NA	M9QRS1	Staphylococcus_phage	100.0	1.4e-99
WP_075583731.1|2837473_2839426_+	DNA polymerase	NA	Q4ZCP5	Staphylococcus_virus	99.4	0.0e+00
WP_001164629.1|2839438_2839624_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_160176232.1|2839623_2840025_+	PVL family protein	NA	A0A2I6PF14	Staphylococcus_phage	97.7	8.1e-68
2839780:2839794	attR	AAATCTAAAGATGAA	NA	NA	NA	NA
WP_000022721.1|2840024_2840282_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	100.0	3.7e-42
WP_000178987.1|2840278_2840527_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_160176233.1|2840541_2840790_+	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	7.7e-37
WP_000185638.1|2840782_2841310_+	dUTP pyrophosphatase	NA	A7TWB1	Staphylococcus_phage	100.0	7.8e-95
WP_000195831.1|2841346_2841583_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000483477.1|2841607_2841844_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_001798107.1|2841827_2842220_+	hypothetical protein	NA	A7TWI1	Staphylococcus_phage	98.5	3.1e-64
WP_024937088.1|2842219_2842372_+	transcriptional regulator	NA	A7TWI2	Staphylococcus_phage	94.0	1.4e-17
WP_000265258.1|2842439_2842640_+	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000884879.1|2842692_2845140_+	hypothetical protein	NA	B5WZN5	Staphylococcus_phage	99.9	0.0e+00
WP_015978074.1|2845242_2845347_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000665205.1|2845480_2845771_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001793488.1|2845751_2847119_+	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000528514.1|2847131_2847569_+	transcriptional regulator	NA	B5WZN8	Staphylococcus_phage	100.0	2.7e-77
WP_000160689.1|2847725_2848040_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_061737014.1|2848168_2848474_+|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	99.0	6.4e-49
