assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	1	658399-658484	1	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGGCTTT	30	1	2	658429-658454|658429-658454	NZ_CP047796.1_2214899-2214924|NZ_CP047796.1_2274983-2275008	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA,NA	NA|301aa|up_9|NZ_CP047796.1_642433_643336_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047796.1_643501_647155_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047796.1_647155_650632_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047796.1_650791_651367_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047796.1_651382_651907_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047796.1_651911_652487_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047796.1_652812_654144_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047796.1_654494_655700_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047796.1_655689_657069_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047796.1_657310_658240_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047796.1_658634_659879_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|396aa|down_1|NZ_CP047796.1_659987_661175_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047796.1_661482_662610_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047796.1_662971_663349_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047796.1_663763_664357_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047796.1_664420_664804_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047796.1_664934_667340_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047796.1_667332_667761_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047796.1_667772_668102_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047796.1_668094_669591_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	2	709185-709264	2	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	GGGCCCCAACATAGAAGCTGACGG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA,NA	NA|414aa|up_9|NZ_CP047796.1_699505_700747_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047796.1_700861_702169_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047796.1_702266_703028_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047796.1_703355_704207_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047796.1_704440_704635_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047796.1_705449_706271_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047796.1_706288_706984_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047796.1_706976_708002_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047796.1_708251_708548_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047796.1_708540_708927_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047796.1_709517_710396_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP047796.1_710573_710954_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP047796.1_711111_711468_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP047796.1_711611_711932_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP047796.1_712081_712621_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP047796.1_712703_713420_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP047796.1_713567_713990_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP047796.1_714388_714883_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP047796.1_715038_715656_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP047796.1_715728_716289_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	3	767566-767650	3	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	767592-767624|767592-767624|767592-767624	NZ_CP047796.1_2013898-2013866|NZ_CP047796.1_2214866-2214834|NZ_CP047796.1_532609-532641	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA,NA|33aa|down_1|NZ_CP047796.1_769110_769209_-	NA|312aa|up_9|NZ_CP047796.1_754719_755655_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_8|NZ_CP047796.1_755721_757161_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_7|NZ_CP047796.1_757168_757654_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|281aa|up_6|NZ_CP047796.1_757661_758504_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_5|NZ_CP047796.1_758509_759442_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|up_4|NZ_CP047796.1_760052_762899_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|up_3|NZ_CP047796.1_762906_764892_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|up_2|NZ_CP047796.1_765160_765397_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|up_1|NZ_CP047796.1_765393_766044_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|up_0|NZ_CP047796.1_766217_767057_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|370aa|down_0|NZ_CP047796.1_767825_768936_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|33aa|down_1|NZ_CP047796.1_769110_769209_-	NA	NA|844aa|down_2|NZ_CP047796.1_769250_771782_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_3|NZ_CP047796.1_772195_772768_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_4|NZ_CP047796.1_772828_773503_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|289aa|down_5|NZ_CP047796.1_774942_775809_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|214aa|down_6|NZ_CP047796.1_775952_776594_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|352aa|down_7|NZ_CP047796.1_776757_777813_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|357aa|down_8|NZ_CP047796.1_778130_779201_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|254aa|down_9|NZ_CP047796.1_779396_780158_+	COG2966, COG2966, Uncharacterized conserved protein [Function unknown]
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	4	1167158-1167313	1	PILER-CR	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	TTGGTGTTGGTTGTGGCGATTGCGGTTGTACATTTGGTGAAGGCGG	46	0	0	NA	NA	NA	2	2	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA|103aa|up_9|NZ_CP047796.1_1156209_1156518_+,NA|496aa|up_8|NZ_CP047796.1_1156623_1158111_-,NA|40aa|up_4|NZ_CP047796.1_1162051_1162171_+,NA|51aa|down_5|NZ_CP047796.1_1173069_1173222_+,NA|179aa|down_7|NZ_CP047796.1_1176047_1176584_+	NA|103aa|up_9|NZ_CP047796.1_1156209_1156518_+	NA	NA|496aa|up_8|NZ_CP047796.1_1156623_1158111_-	NA	NA|233aa|up_7|NZ_CP047796.1_1158129_1158828_-	PRK13036, PRK13036, superantigen-like protein; Reviewed	NA|411aa|up_6|NZ_CP047796.1_1159210_1160443_-	cd17258, RMtype1_S_Sau13435ORF2165P-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S	NA|519aa|up_5|NZ_CP047796.1_1160435_1161992_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|40aa|up_4|NZ_CP047796.1_1162051_1162171_+	NA	NA|228aa|up_3|NZ_CP047796.1_1162253_1162937_-	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|233aa|up_2|NZ_CP047796.1_1163299_1163998_-	PRK13345, PRK13345, superantigen-like protein; Reviewed	NA|232aa|up_1|NZ_CP047796.1_1164338_1165034_-	PRK13346, PRK13346, superantigen-like protein 7; Reviewed	NA|235aa|up_0|NZ_CP047796.1_1165480_1166185_-	PRK13035, PRK13035, superantigen-like protein 5; Reviewed	NA|344aa|down_0|NZ_CP047796.1_1167869_1168901_-	PRK13335, PRK13335, superantigen-like protein; Reviewed	NA|234aa|down_1|NZ_CP047796.1_1169188_1169890_-	PRK13041, PRK13041, superantigen-like protein; Reviewed	NA|227aa|down_2|NZ_CP047796.1_1170172_1170853_-	PRK13037, PRK13037, superantigen-like protein; Reviewed	NA|282aa|down_3|NZ_CP047796.1_1171324_1172170_+	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|120aa|down_4|NZ_CP047796.1_1172188_1172548_+	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|51aa|down_5|NZ_CP047796.1_1173069_1173222_+	NA	NA|109aa|down_6|NZ_CP047796.1_1173479_1173806_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|179aa|down_7|NZ_CP047796.1_1176047_1176584_+	NA	NA|514aa|down_8|NZ_CP047796.1_1177113_1178655_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|down_9|NZ_CP047796.1_1178679_1180146_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	5	1811994-1812252	2,4	PILER-CR,CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	TATTGAAGAAGATACAA,GCCAACACCACCGACACCAGAGGTACCA	17,28	0	0	NA	NA	NA:NA	2,2	2	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA|67aa|up_0|NZ_CP047796.1_1809280_1809481_+,NA|103aa|down_1|NZ_CP047796.1_1813685_1813994_-,NA|89aa|down_2|NZ_CP047796.1_1814137_1814404_-,NA|41aa|down_8|NZ_CP047796.1_1822725_1822848_-,NA|64aa|down_9|NZ_CP047796.1_1823282_1823474_+	NA|204aa|up_9|NZ_CP047796.1_1798114_1798726_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047796.1_1799276_1800554_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047796.1_1801030_1802854_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047796.1_1802992_1803409_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047796.1_1803639_1804332_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_4|NZ_CP047796.1_1804496_1805228_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047796.1_1805414_1806095_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047796.1_1806119_1807673_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047796.1_1807789_1809148_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_0|NZ_CP047796.1_1809280_1809481_+	NA	NA|289aa|down_0|NZ_CP047796.1_1812692_1813559_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047796.1_1813685_1813994_-	NA	NA|89aa|down_2|NZ_CP047796.1_1814137_1814404_-	NA	NA|603aa|down_3|NZ_CP047796.1_1814687_1816496_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047796.1_1816612_1817005_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047796.1_1817006_1819868_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_6|NZ_CP047796.1_1820174_1820948_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_7|NZ_CP047796.1_1821927_1822722_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_8|NZ_CP047796.1_1822725_1822848_-	NA	NA|64aa|down_9|NZ_CP047796.1_1823282_1823474_+	NA
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	6	1892505-1892609	5	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	36	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA|35aa|up_0|NZ_CP047796.1_1892145_1892250_+,NA|35aa|down_2|NZ_CP047796.1_1894781_1894886_-	NA|453aa|up_9|NZ_CP047796.1_1882103_1883462_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047796.1_1883463_1884471_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047796.1_1884448_1885564_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047796.1_1885574_1886267_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047796.1_1886277_1886745_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047796.1_1886796_1887774_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047796.1_1887775_1888723_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047796.1_1889272_1890202_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047796.1_1890737_1892051_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047796.1_1892145_1892250_+	NA	NA|289aa|down_0|NZ_CP047796.1_1892749_1893616_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047796.1_1893942_1894629_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047796.1_1894781_1894886_-	NA	NA|480aa|down_3|NZ_CP047796.1_1895059_1896499_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047796.1_1896619_1897399_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047796.1_1897379_1898099_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047796.1_1898095_1898827_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047796.1_1898923_1900174_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047796.1_1900428_1900791_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047796.1_1900809_1901409_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	7	2048070-2048150	6	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	CAAATTGGCGGGGCCCCAACATAGA	25	1	6	2048095-2048125|2048095-2048125|2048095-2048125|2048095-2048125|2048095-2048125|2048095-2048125	NZ_CP047796.1_506392-506422|NZ_CP047796.1_2734889-2734919|NZ_CP047796.1_658493-658463|NZ_CP047796.1_704982-704952|NZ_CP047796.1_754204-754234|NZ_CP047796.1_2361622-2361652	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA,NA|57aa|down_0|NZ_CP047796.1_2048206_2048377_-,NA|84aa|down_5|NZ_CP047796.1_2051517_2051769_-,NA|106aa|down_8|NZ_CP047796.1_2056893_2057211_-,NA|55aa|down_9|NZ_CP047796.1_2057455_2057620_-	NA|202aa|up_9|NZ_CP047796.1_2040966_2041572_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047796.1_2041739_2042744_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047796.1_2042772_2043279_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047796.1_2043280_2043775_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047796.1_2043837_2045097_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047796.1_2045093_2045579_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047796.1_2045592_2046039_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047796.1_2046044_2046278_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047796.1_2046284_2046884_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047796.1_2046903_2047926_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047796.1_2048206_2048377_-	NA	NA|117aa|down_1|NZ_CP047796.1_2048502_2048853_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047796.1_2048954_2050166_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047796.1_2050158_2050599_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047796.1_2050761_2051526_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047796.1_2051517_2051769_-	NA	NA|422aa|down_6|NZ_CP047796.1_2052157_2053423_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047796.1_2053539_2056707_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047796.1_2056893_2057211_-	NA	NA|55aa|down_9|NZ_CP047796.1_2057455_2057620_-	NA
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	8	2088032-2088157	7	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	37	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA,NA|61aa|down_1|NZ_CP047796.1_2089051_2089234_+,NA|56aa|down_8|NZ_CP047796.1_2097582_2097750_-	NA|315aa|up_9|NZ_CP047796.1_2078304_2079249_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_8|NZ_CP047796.1_2079265_2079634_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|523aa|up_7|NZ_CP047796.1_2079886_2081454_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|270aa|up_6|NZ_CP047796.1_2081829_2082639_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047796.1_2082635_2083496_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047796.1_2083485_2084292_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP047796.1_2084296_2085091_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047796.1_2085339_2085777_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047796.1_2085790_2086189_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047796.1_2086537_2087974_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|60aa|down_0|NZ_CP047796.1_2088222_2088402_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|61aa|down_1|NZ_CP047796.1_2089051_2089234_+	NA	NA|555aa|down_2|NZ_CP047796.1_2089703_2091368_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047796.1_2091404_2092109_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047796.1_2092499_2092925_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047796.1_2093219_2094035_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|285aa|down_6|NZ_CP047796.1_2094245_2095100_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|809aa|down_7|NZ_CP047796.1_2095159_2097586_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|56aa|down_8|NZ_CP047796.1_2097582_2097750_-	NA	NA|139aa|down_9|NZ_CP047796.1_2097992_2098409_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	9	2350924-2351115	1	CRT	no	DEDDh	DinG,DEDDh,cas3,csa3,WYL	Unclear	GGTGGGGCCCNCAACANAGANN	22	2	9	2351003-2351036|2351003-2351036|2351003-2351036|2351003-2351036|2351003-2351036|2351003-2351036|2351003-2351036|2351003-2351036|2351058-2351094	NZ_CP047796.1_506452-506485|NZ_CP047796.1_767552-767585|NZ_CP047796.1_800790-800757|NZ_CP047796.1_1239315-1239282|NZ_CP047796.1_1314071-1314038|NZ_CP047796.1_1906146-1906113|NZ_CP047796.1_2048153-2048186|NZ_CP047796.1_2615142-2615109|NZ_CP047796.1_754322-754358	NA	3	3	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA|49aa|up_0|NZ_CP047796.1_2350472_2350619_+,NA|31aa|down_5|NZ_CP047796.1_2356500_2356593_+,NA|37aa|down_9|NZ_CP047796.1_2359598_2359709_+	NA|101aa|up_9|NZ_CP047796.1_2338653_2338956_+	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_8|NZ_CP047796.1_2339138_2339831_+	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|731aa|up_7|NZ_CP047796.1_2339827_2342020_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|668aa|up_6|NZ_CP047796.1_2342023_2344027_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|400aa|up_5|NZ_CP047796.1_2344039_2345239_+	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|513aa|up_4|NZ_CP047796.1_2345327_2346866_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|101aa|up_3|NZ_CP047796.1_2347232_2347535_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|486aa|up_2|NZ_CP047796.1_2347536_2348994_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|476aa|up_1|NZ_CP047796.1_2349006_2350434_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|49aa|up_0|NZ_CP047796.1_2350472_2350619_+	NA	NA|316aa|down_0|NZ_CP047796.1_2351256_2352204_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|down_1|NZ_CP047796.1_2352284_2353646_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|down_2|NZ_CP047796.1_2353815_2354346_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|down_3|NZ_CP047796.1_2354592_2355663_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|down_4|NZ_CP047796.1_2355729_2356284_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|down_5|NZ_CP047796.1_2356500_2356593_+	NA	NA|167aa|down_6|NZ_CP047796.1_2356674_2357175_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|down_7|NZ_CP047796.1_2357466_2358780_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|down_8|NZ_CP047796.1_2358781_2359513_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|down_9|NZ_CP047796.1_2359598_2359709_+	NA
GCF_009912835.1_ASM991283v1	NZ_CP047796	Staphylococcus aureus strain UP_462 chromosome, complete genome	10	2700782-2700861	8	CRISPRCasFinder	no		DinG,DEDDh,cas3,csa3,WYL	Orphan	CCCAACATAGAGAATTTCGTAAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DinG,DEDDh,cas3,csa3,WYL	NA|43aa|up_8|NZ_CP047796.1_2693340_2693469_+,NA|49aa|up_3|NZ_CP047796.1_2696505_2696652_+,NA	NA|589aa|up_9|NZ_CP047796.1_2691241_2693008_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP047796.1_2693340_2693469_+	NA	NA|258aa|up_7|NZ_CP047796.1_2693468_2694242_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP047796.1_2694402_2695677_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP047796.1_2695761_2696184_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP047796.1_2696283_2696466_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP047796.1_2696505_2696652_+	NA	NA|338aa|up_2|NZ_CP047796.1_2696888_2697902_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP047796.1_2698211_2699354_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP047796.1_2699354_2700473_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP047796.1_2701154_2701823_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP047796.1_2701824_2704302_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP047796.1_2704644_2707275_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP047796.1_2707337_2707598_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP047796.1_2707601_2708030_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP047796.1_2708044_2708353_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP047796.1_2708637_2709276_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP047796.1_2709278_2710202_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP047796.1_2710213_2711482_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP047796.1_2711481_2712105_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
