assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	1	514072-514156	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	514098-514130|514098-514130	NZ_CP047791.1_747189-747221|NZ_CP047791.1_2126377-2126345	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP047791.1_512512_512611_+,NA	NA|357aa|up_9|NZ_CP047791.1_502521_503592_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP047791.1_503909_504965_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP047791.1_505128_505770_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP047791.1_505913_506780_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP047791.1_507143_508226_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP047791.1_508218_508893_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP047791.1_508953_509526_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP047791.1_509939_512471_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP047791.1_512512_512611_+	NA	NA|370aa|up_0|NZ_CP047791.1_512785_513896_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP047791.1_514664_515504_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP047791.1_515677_516328_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP047791.1_516324_516561_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP047791.1_516829_518815_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP047791.1_518822_521669_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP047791.1_522279_523212_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP047791.1_523217_524060_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP047791.1_524067_524553_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP047791.1_524560_526000_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP047791.1_526066_527002_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	2	572476-572555	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCGTCAGCTTCTGTGTTGGGGCCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|187aa|up_9|NZ_CP047791.1_565450_566011_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|206aa|up_8|NZ_CP047791.1_566083_566701_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_7|NZ_CP047791.1_566856_567351_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_6|NZ_CP047791.1_567749_568172_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_5|NZ_CP047791.1_568319_569036_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_4|NZ_CP047791.1_569118_569658_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_3|NZ_CP047791.1_569807_570128_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_2|NZ_CP047791.1_570271_570628_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_1|NZ_CP047791.1_570785_571166_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|293aa|up_0|NZ_CP047791.1_571343_572222_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP047791.1_572812_573199_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP047791.1_573191_573488_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP047791.1_573737_574763_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP047791.1_574755_575451_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP047791.1_575468_576290_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP047791.1_576875_577070_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP047791.1_577303_578155_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP047791.1_578482_579244_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP047791.1_579341_580649_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP047791.1_580763_582005_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	3	621367-621452	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	621397-621422|621397-621422	NZ_CP047791.1_1867805-1867830|NZ_CP047791.1_1927890-1927915	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP047791.1_610256_611753_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP047791.1_611745_612075_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP047791.1_612086_612515_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP047791.1_612507_614913_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP047791.1_615043_615427_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP047791.1_615490_616084_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP047791.1_616498_616876_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP047791.1_617237_618365_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP047791.1_618672_619863_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP047791.1_619971_621216_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP047791.1_621610_622540_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP047791.1_622781_624161_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP047791.1_624150_625356_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP047791.1_625706_627038_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP047791.1_627363_627939_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP047791.1_627943_628468_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP047791.1_628483_629059_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP047791.1_629218_632695_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP047791.1_632695_636349_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP047791.1_636514_637417_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	4	964684-964776	4	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|215aa|up_9|NZ_CP047791.1_954558_955203_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP047791.1_955209_955851_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP047791.1_956231_956420_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP047791.1_956862_957237_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP047791.1_957251_958898_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP047791.1_959087_961148_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP047791.1_961350_961923_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP047791.1_961927_962914_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP047791.1_962906_963833_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP047791.1_963825_964560_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP047791.1_964865_965099_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP047791.1_965214_965946_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP047791.1_966092_969659_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP047791.1_969658_970909_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP047791.1_970895_971228_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP047791.1_971253_972621_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP047791.1_973055_973331_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP047791.1_973518_974022_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP047791.1_974021_974759_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP047791.1_974861_975212_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	5	1688205-1688332	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP047791.1_1680364_1680760_-,NA|51aa|up_6|NZ_CP047791.1_1681360_1681513_-,NA	NA|274aa|up_9|NZ_CP047791.1_1677506_1678328_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047791.1_1678783_1680169_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047791.1_1680364_1680760_-	NA	NA|51aa|up_6|NZ_CP047791.1_1681360_1681513_-	NA	NA|200aa|up_5|NZ_CP047791.1_1681537_1682137_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047791.1_1682295_1682766_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047791.1_1682770_1683913_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047791.1_1684048_1684777_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047791.1_1684763_1686221_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047791.1_1686479_1687541_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047791.1_1696337_1696784_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047791.1_1696880_1697831_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047791.1_1697836_1698292_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047791.1_1698372_1699662_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047791.1_1699954_1701049_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|181aa|down_5|NZ_CP047791.1_1703265_1703808_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_6|NZ_CP047791.1_1704110_1705148_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_7|NZ_CP047791.1_1705299_1706277_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_8|NZ_CP047791.1_1706537_1707374_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|506aa|down_9|NZ_CP047791.1_1707382_1708900_-	COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	6	1732990-1733181	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	1733011-1733047|1733069-1733102|1733069-1733102|1733069-1733102|1733069-1733102|1733069-1733102|1733069-1733102|1733069-1733102|1733069-1733102	NZ_CP047791.1_527364-527400|NZ_CP047791.1_43549-43516|NZ_CP047791.1_480966-480933|NZ_CP047791.1_514137-514170|NZ_CP047791.1_576624-576591|NZ_CP047791.1_1510227-1510194|NZ_CP047791.1_2092056-2092089|NZ_CP047791.1_2234129-2234096|NZ_CP047791.1_2824565-2824532	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP047791.1_1724395_1724506_-,NA|31aa|up_5|NZ_CP047791.1_1727511_1727604_-,NA|49aa|down_0|NZ_CP047791.1_1733485_1733632_-	NA|37aa|up_9|NZ_CP047791.1_1724395_1724506_-	NA	NA|244aa|up_8|NZ_CP047791.1_1724591_1725323_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP047791.1_1725324_1726638_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP047791.1_1726929_1727430_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP047791.1_1727511_1727604_-	NA	DEDDh|185aa|up_4|NZ_CP047791.1_1727820_1728375_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP047791.1_1728441_1729512_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP047791.1_1729758_1730289_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP047791.1_1730458_1731820_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP047791.1_1731900_1732848_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP047791.1_1733485_1733632_-	NA	NA|476aa|down_1|NZ_CP047791.1_1733670_1735098_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP047791.1_1735110_1736568_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP047791.1_1736569_1736872_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP047791.1_1737238_1738777_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP047791.1_1738865_1740065_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP047791.1_1740077_1742081_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP047791.1_1742084_1744277_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP047791.1_1744273_1744966_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP047791.1_1745148_1745451_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	7	1843731-1843819	6	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|127aa|up_8|NZ_CP047791.1_1838781_1839162_-,NA|128aa|up_4|NZ_CP047791.1_1842447_1842831_-,NA|68aa|up_3|NZ_CP047791.1_1842832_1843036_-,NA|52aa|up_2|NZ_CP047791.1_1843020_1843176_-,NA	NA|214aa|up_9|NZ_CP047791.1_1838143_1838785_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_8|NZ_CP047791.1_1838781_1839162_-	NA	NA|570aa|up_7|NZ_CP047791.1_1839473_1841183_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_6|NZ_CP047791.1_1841196_1842066_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|106aa|up_5|NZ_CP047791.1_1842129_1842447_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|128aa|up_4|NZ_CP047791.1_1842447_1842831_-	NA	NA|68aa|up_3|NZ_CP047791.1_1842832_1843036_-	NA	NA|52aa|up_2|NZ_CP047791.1_1843020_1843176_-	NA	NA|106aa|up_1|NZ_CP047791.1_1843172_1843490_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP047791.1_1843494_1843713_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP047791.1_1843885_1844560_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP047791.1_1844573_1845746_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP047791.1_1845814_1847431_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP047791.1_1847506_1847791_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP047791.1_1847965_1848709_+	pfam02517, Abi, CAAX protease self-immunity	NA|419aa|down_5|NZ_CP047791.1_1848733_1849990_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP047791.1_1850186_1850813_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP047791.1_1851164_1851950_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP047791.1_1852551_1852686_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP047791.1_1852921_1853485_+	smart00793, AgrB, Accessory gene regulator B
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	8	1993549-1993750	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP047791.1_1974965_1975070_-,NA|53aa|up_7|NZ_CP047791.1_1975749_1975908_+,NA	NA|538aa|up_9|NZ_CP047791.1_1972894_1974508_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP047791.1_1974965_1975070_-	NA	NA|53aa|up_7|NZ_CP047791.1_1975749_1975908_+	NA	NA|286aa|up_6|NZ_CP047791.1_1976566_1977424_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP047791.1_1977491_1978274_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP047791.1_1978505_1980311_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP047791.1_1980991_1982530_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP047791.1_1982564_1984697_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP047791.1_1984708_1985143_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP047791.1_1985142_1986249_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP047791.1_1994238_1995594_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP047791.1_1995620_1996553_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP047791.1_1996554_1997364_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP047791.1_1997553_1998462_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP047791.1_2004679_2005744_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP047791.1_2007523_2007997_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP047791.1_2008118_2009462_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP047791.1_2009639_2010323_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP047791.1_2010341_2011529_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP047791.1_2011572_2012088_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	9	2052083-2052208	7	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP047791.1_2042489_2042657_+,NA|61aa|up_1|NZ_CP047791.1_2051005_2051188_-,NA	NA|139aa|up_9|NZ_CP047791.1_2041830_2042247_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP047791.1_2042489_2042657_+	NA	NA|809aa|up_7|NZ_CP047791.1_2042653_2045080_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP047791.1_2045139_2045994_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP047791.1_2046204_2047020_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP047791.1_2047314_2047740_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP047791.1_2048130_2048835_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP047791.1_2048871_2050536_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP047791.1_2051005_2051188_-	NA	NA|60aa|up_0|NZ_CP047791.1_2051837_2052017_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP047791.1_2052265_2053702_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP047791.1_2054050_2054449_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP047791.1_2054462_2054900_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP047791.1_2055148_2055943_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP047791.1_2055947_2056754_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP047791.1_2056743_2057604_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP047791.1_2057600_2058410_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP047791.1_2058785_2060353_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP047791.1_2060605_2060974_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP047791.1_2060990_2061935_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_009912715.1_ASM991271v1	NZ_CP047791	Staphylococcus aureus strain UP_818 chromosome, complete genome	10	2092092-2092172	8	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	4	2092117-2092147|2092117-2092147|2092117-2092147|2092117-2092147	NZ_CP047791.1_773352-773382|NZ_CP047791.1_1390282-1390312|NZ_CP047791.1_527488-527518|NZ_CP047791.1_621388-621358	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP047791.1_2082621_2082786_+,NA|106aa|up_8|NZ_CP047791.1_2083030_2083348_+,NA|84aa|up_5|NZ_CP047791.1_2088472_2088724_+,NA|57aa|up_0|NZ_CP047791.1_2091864_2092035_+,NA	NA|55aa|up_9|NZ_CP047791.1_2082621_2082786_+	NA	NA|106aa|up_8|NZ_CP047791.1_2083030_2083348_+	NA	NA|1056aa|up_7|NZ_CP047791.1_2083534_2086702_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047791.1_2086818_2088084_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047791.1_2088472_2088724_+	NA	NA|255aa|up_4|NZ_CP047791.1_2088715_2089480_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047791.1_2089642_2090083_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047791.1_2090075_2091287_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047791.1_2091388_2091739_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047791.1_2091864_2092035_+	NA	NA|341aa|down_0|NZ_CP047791.1_2092315_2093338_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047791.1_2093357_2093957_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047791.1_2093963_2094197_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047791.1_2094202_2094649_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047791.1_2094662_2095148_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047791.1_2095144_2096404_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047791.1_2096466_2096961_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047791.1_2096962_2097469_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047791.1_2097497_2098502_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047791.1_2098669_2099275_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
