bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	3.1|839891|34|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	34	0	0	1	34	1328877	1328844	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	4.41e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1328844-1328877	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	3.1|839891|34|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	34	0	0	1	34	1418016	1418049	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	4.41e-10	55.5	1.0	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	1418016-1418049	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.1|1775741|21|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.238	21	1	0	1	21	1775682	1775702	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.003	31.7	1.0	AGCTGGCCAATAGTCAGCTTT	1775682-1775702	AGCTGGCCAATAGTTAGCTTT	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	791198	791179	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	791179-791198	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	791253	791234	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	791234-791253	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	796746	796727	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	796727-796746	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	796804	796785	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	796785-796804	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	839964	839945	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	839945-839964	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	922377	922358	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	922358-922377	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	1046351	1046332	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	1046332-1046351	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	1418148	1418129	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	1418129-1418148	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	1597158	1597139	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	1597139-1597158	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	1933810	1933791	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	1933791-1933810	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	2687786	2687767	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	2687767-2687786	AGAATTTCTTTTCGAAATTC	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	115463	115482	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	115463-115482	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	272009	272028	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	272009-272028	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	351257	351276	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	351257-351276	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	351312	351331	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	351312-351331	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	1328745	1328764	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	1328745-1328764	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	1775627	1775646	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	1775627-1775646	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	100.000	20	0	0	1	20	2439516	2439535	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.001	33.3	1.0	GAATTTCGAAAAGAAATTCT	2439516-2439535	GAATTTCGAAAAGAAATTCT	0
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.000	20	1	0	1	20	804012	803993	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.009	30.1	1.0	GAATTTCGAAAAGAAATTCT	803993-804012	AGAATTTCATTTCGAAATTC	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.000	20	1	0	1	20	1378076	1378057	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.009	30.1	1.0	GAATTTCGAAAAGAAATTCT	1378057-1378076	AGAATTTCTTTTCGAAAATC	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.000	20	1	0	1	20	1631124	1631105	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.009	30.1	1.0	GAATTTCGAAAAGAAATTCT	1631105-1631124	AGAATTTCTTTACGAAATTC	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.000	20	1	0	1	20	1943218	1943199	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.009	30.1	1.0	GAATTTCGAAAAGAAATTCT	1943199-1943218	AGAATTTCCTTTCGAAATTC	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.000	20	1	0	1	20	272064	272083	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.009	30.1	1.0	GAATTTCGAAAAGAAATTCT	272064-272083	GAAATTCGAAAAGAAATTCT	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	95.000	20	1	0	1	20	1120628	1120647	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.009	30.1	1.0	GAATTTCGAAAAGAAATTCT	1120628-1120647	GAATTTCAAAAAGAAATTCT	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.2|1775800|20|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	90.000	20	2	0	1	20	764161	764180	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.085	26.9	1.0	GAATTTCGAAAAGAAATTCT	764161-764180	GAATTTCAAAAAGGAATTCT	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5.3|1775858|18|NZ_CP047830|CRT	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	94.444	18	1	0	1	18	1775685	1775702	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	0.085	26.9	1.0	TGGCCAATAGTCAGCTTT	1775685-1775702	TGGCCAATAGTTAGCTTT	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	6.1|1932384|33|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	96.970	33	1	0	1	33	1597188	1597220	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	1.04e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1597188-1597220	CATTATAGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	6.1|1932384|33|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	96.970	33	1	0	1	33	2522174	2522206	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	1.04e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	2522174-2522206	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	6.1|1932384|33|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	96.970	33	1	0	1	33	1120712	1120680	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	1.04e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1120680-1120712	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	6.1|1932384|33|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	96.970	33	1	0	1	33	1328831	1328799	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	1.04e-08	50.7	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1328799-1328831	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG	1
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	6.1|1932384|33|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.939	33	2	0	1	33	1418062	1418094	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	9.38e-08	47.5	1.0	CATTATCGTAAGCTGACTTTTCGTCAGCTTCTG	1418062-1418094	CATTATTGTAAGCTGACTTTTCGTCATCTTCTG	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	796602	796632	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	796602-796632	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	1020067	1020097	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1020067-1020097	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	2522172	2522202	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2522172-2522202	CACATTATTGTAAGCTGACTTTTCGTCAGCT	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	2687701	2687731	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	2687701-2687731	CACATTATTGTAAGCTGACTTTCCGCCAGCT	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	351173	351143	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	351143-351173	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	1120714	1120684	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1120684-1120714	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8.1|2248126|31|NZ_CP047830|CRISPRCasFinder	NZ_CP047830.1	Staphylococcus aureus strain UP_996 chromosome, complete genome	93.548	31	2	0	1	31	1328833	1328803	389794-389894|634065-634157|839867-839948|1036349-1036436|1775703-1775913|1932361-1932439|2124186-2124336|2248101-2248181	7.23e-07	44.4	1.0	CACATTATTGTAAGCTGACTTTCTGTCAGCT	1328803-1328833	AGCTGACGAAAAGTCAGCTTACAATAATGTG	2
