assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	1	389794-389894	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_7|NZ_CP047830.1_382400_382784_-,NA|98aa|up_5|NZ_CP047830.1_383737_384031_-,NA|34aa|up_0|NZ_CP047830.1_389018_389120_+,NA|221aa|down_1|NZ_CP047830.1_390984_391647_-,NA|179aa|down_7|NZ_CP047830.1_397738_398275_-	NA|84aa|up_9|NZ_CP047830.1_381075_381327_+	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|194aa|up_8|NZ_CP047830.1_381753_382335_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP047830.1_382400_382784_-	NA	NA|209aa|up_6|NZ_CP047830.1_383038_383665_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP047830.1_383737_384031_-	NA	NA|508aa|up_4|NZ_CP047830.1_384109_385633_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP047830.1_385648_386218_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP047830.1_386709_387465_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP047830.1_387545_388934_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP047830.1_389018_389120_+	NA	NA|319aa|down_0|NZ_CP047830.1_389910_390867_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP047830.1_390984_391647_-	NA	NA|136aa|down_2|NZ_CP047830.1_391789_392197_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP047830.1_392709_393288_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP047830.1_393287_394556_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP047830.1_394593_396060_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP047830.1_396084_397626_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP047830.1_397738_398275_-	NA	NA|235aa|down_8|NZ_CP047830.1_398667_399372_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP047830.1_399770_400043_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	2	634065-634157	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP047830.1_630549_630657_+,NA|169aa|down_4|NZ_CP047830.1_637904_638411_+,NA|239aa|down_5|NZ_CP047830.1_638572_639289_+	NA|313aa|up_9|NZ_CP047830.1_624751_625690_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP047830.1_625900_626437_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP047830.1_626605_627082_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP047830.1_627121_628417_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP047830.1_628444_628966_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP047830.1_629464_630475_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP047830.1_630549_630657_+	NA	NA|128aa|up_2|NZ_CP047830.1_630782_631166_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP047830.1_631162_632824_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP047830.1_633211_633847_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP047830.1_634285_635113_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP047830.1_635260_636211_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP047830.1_636265_636985_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP047830.1_636968_637769_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP047830.1_637904_638411_+	NA	NA|239aa|down_5|NZ_CP047830.1_638572_639289_+	NA	NA|263aa|down_6|NZ_CP047830.1_639457_640246_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP047830.1_640496_640871_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP047830.1_641818_642748_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP047830.1_642942_643167_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	3	839867-839948	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	839891-839924|839891-839924	NZ_CP047830.1_1328877-1328844|NZ_CP047830.1_1418016-1418049	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP047830.1_838769_838883_+,NA	NA|206aa|up_9|NZ_CP047830.1_833624_834242_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP047830.1_834396_834891_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP047830.1_835289_835712_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP047830.1_835859_836576_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP047830.1_836658_837198_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP047830.1_837347_837668_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP047830.1_837811_838168_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP047830.1_838325_838706_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP047830.1_838769_838883_+	NA	NA|293aa|up_0|NZ_CP047830.1_838884_839763_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP047830.1_840508_840895_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP047830.1_840887_841184_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP047830.1_841433_842459_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP047830.1_842451_843147_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP047830.1_843164_843986_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP047830.1_844128_845349_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP047830.1_845436_846165_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP047830.1_846188_846917_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP047830.1_846933_847392_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP047830.1_847403_847736_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	4	1036349-1036436	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP047830.1_1036225_1036345_+,NA|45aa|down_0|NZ_CP047830.1_1036445_1036580_-,NA|432aa|down_1|NZ_CP047830.1_1036731_1038027_+	NA|730aa|up_9|NZ_CP047830.1_1024803_1026993_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP047830.1_1026971_1028456_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP047830.1_1028448_1029477_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP047830.1_1029479_1030046_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP047830.1_1030060_1031539_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP047830.1_1031560_1032808_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP047830.1_1033072_1033879_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP047830.1_1033871_1035272_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP047830.1_1035286_1035862_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP047830.1_1036225_1036345_+	NA	NA|45aa|down_0|NZ_CP047830.1_1036445_1036580_-	NA	NA|432aa|down_1|NZ_CP047830.1_1036731_1038027_+	NA	NA|391aa|down_2|NZ_CP047830.1_1038451_1039624_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP047830.1_1039677_1040220_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP047830.1_1040373_1040640_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP047830.1_1040642_1042361_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP047830.1_1042597_1042831_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP047830.1_1043028_1044390_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP047830.1_1044386_1045406_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP047830.1_1045538_1046201_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	5	1775703-1775913	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGANNN	41	3	27	1775741-1775761|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775800-1775819|1775858-1775875	NZ_CP047830.1_1775682-1775702|NZ_CP047830.1_791198-791179|NZ_CP047830.1_791253-791234|NZ_CP047830.1_796746-796727|NZ_CP047830.1_796804-796785|NZ_CP047830.1_839964-839945|NZ_CP047830.1_922377-922358|NZ_CP047830.1_1046351-1046332|NZ_CP047830.1_1418148-1418129|NZ_CP047830.1_1597158-1597139|NZ_CP047830.1_1933810-1933791|NZ_CP047830.1_2687786-2687767|NZ_CP047830.1_115463-115482|NZ_CP047830.1_272009-272028|NZ_CP047830.1_351257-351276|NZ_CP047830.1_351312-351331|NZ_CP047830.1_1328745-1328764|NZ_CP047830.1_1775627-1775646|NZ_CP047830.1_2439516-2439535|NZ_CP047830.1_804012-803993|NZ_CP047830.1_1378076-1378057|NZ_CP047830.1_1631124-1631105|NZ_CP047830.1_1943218-1943199|NZ_CP047830.1_272064-272083|NZ_CP047830.1_1120628-1120647|NZ_CP047830.1_764161-764180|NZ_CP047830.1_1775685-1775702	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP047830.1_1766222_1766819_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP047830.1_1766847_1767705_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP047830.1_1767804_1768116_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP047830.1_1768180_1769257_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP047830.1_1769343_1769655_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP047830.1_1769779_1770622_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP047830.1_1771091_1771736_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP047830.1_1771750_1772542_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP047830.1_1773091_1773940_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP047830.1_1773943_1775353_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP047830.1_1776216_1776639_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP047830.1_1776655_1777351_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP047830.1_1777347_1779009_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP047830.1_1779415_1780684_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP047830.1_1780800_1787361_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP047830.1_1787687_1787999_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|805aa|down_6|NZ_CP047830.1_1788020_1790435_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP047830.1_1790725_1791907_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP047830.1_1792016_1792970_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP047830.1_1792966_1793530_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	6	1932361-1932439	5	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	5	1932384-1932416|1932384-1932416|1932384-1932416|1932384-1932416|1932384-1932416	NZ_CP047830.1_1597188-1597220|NZ_CP047830.1_2522174-2522206|NZ_CP047830.1_1120712-1120680|NZ_CP047830.1_1328831-1328799|NZ_CP047830.1_1418062-1418094	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP047830.1_1926555_1926831_+,NA|129aa|up_1|NZ_CP047830.1_1930816_1931203_-,NA|138aa|down_1|NZ_CP047830.1_1934181_1934595_-,NA|37aa|down_2|NZ_CP047830.1_1934623_1934734_-,NA|31aa|down_6|NZ_CP047830.1_1937739_1937832_-	NA|419aa|up_9|NZ_CP047830.1_1924478_1925735_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP047830.1_1925737_1925938_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP047830.1_1926084_1926549_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP047830.1_1926555_1926831_+	NA	NA|406aa|up_5|NZ_CP047830.1_1927108_1928326_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP047830.1_1928441_1929071_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP047830.1_1929060_1930104_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP047830.1_1930100_1930802_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP047830.1_1930816_1931203_-	NA	NA|253aa|up_0|NZ_CP047830.1_1931419_1932178_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP047830.1_1932705_1933692_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP047830.1_1934181_1934595_-	NA	NA|37aa|down_2|NZ_CP047830.1_1934623_1934734_-	NA	NA|244aa|down_3|NZ_CP047830.1_1934819_1935551_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP047830.1_1935552_1936866_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP047830.1_1937157_1937658_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP047830.1_1937739_1937832_-	NA	DEDDh|185aa|down_7|NZ_CP047830.1_1938046_1938601_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP047830.1_1938668_1939739_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP047830.1_1939985_1940516_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	7	2124186-2124336	6	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP047830.1_2119057_2119288_-,NA|364aa|up_0|NZ_CP047830.1_2123076_2124168_+,NA|35aa|down_0|NZ_CP047830.1_2124667_2124772_-,NA|31aa|down_2|NZ_CP047830.1_2126883_2126976_+	NA|237aa|up_9|NZ_CP047830.1_2114668_2115379_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP047830.1_2115499_2115943_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP047830.1_2116141_2116555_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP047830.1_2117012_2118386_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP047830.1_2119057_2119288_-	NA	NA|313aa|up_4|NZ_CP047830.1_2119318_2120257_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP047830.1_2120691_2121357_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP047830.1_2121508_2121829_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP047830.1_2121830_2122811_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP047830.1_2123076_2124168_+	NA	NA|35aa|down_0|NZ_CP047830.1_2124667_2124772_-	NA	NA|379aa|down_1|NZ_CP047830.1_2125458_2126595_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP047830.1_2126883_2126976_+	NA	NA|286aa|down_3|NZ_CP047830.1_2127680_2128538_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP047830.1_2128605_2129388_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP047830.1_2129619_2131425_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP047830.1_2132105_2133644_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP047830.1_2133678_2135811_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP047830.1_2135822_2136257_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP047830.1_2136256_2137363_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_009912655.1_ASM991265v1	NZ_CP047830	Staphylococcus aureus strain UP_996 chromosome, complete genome	8	2248101-2248181	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	7	2248126-2248156|2248126-2248156|2248126-2248156|2248126-2248156|2248126-2248156|2248126-2248156|2248126-2248156	NZ_CP047830.1_796602-796632|NZ_CP047830.1_1020067-1020097|NZ_CP047830.1_2522172-2522202|NZ_CP047830.1_2687701-2687731|NZ_CP047830.1_351173-351143|NZ_CP047830.1_1120714-1120684|NZ_CP047830.1_1328833-1328803	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP047830.1_2238632_2238797_+,NA|106aa|up_8|NZ_CP047830.1_2239041_2239359_+,NA|84aa|up_5|NZ_CP047830.1_2244483_2244735_+,NA|57aa|up_0|NZ_CP047830.1_2247874_2248045_+,NA	NA|55aa|up_9|NZ_CP047830.1_2238632_2238797_+	NA	NA|106aa|up_8|NZ_CP047830.1_2239041_2239359_+	NA	NA|1056aa|up_7|NZ_CP047830.1_2239545_2242713_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047830.1_2242829_2244095_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047830.1_2244483_2244735_+	NA	NA|255aa|up_4|NZ_CP047830.1_2244726_2245491_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047830.1_2245652_2246093_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047830.1_2246085_2247297_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047830.1_2247398_2247749_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047830.1_2247874_2248045_+	NA	NA|341aa|down_0|NZ_CP047830.1_2248324_2249347_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047830.1_2249366_2249966_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047830.1_2249972_2250206_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047830.1_2250211_2250658_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047830.1_2250671_2251157_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047830.1_2251153_2252413_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047830.1_2252475_2252970_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047830.1_2252971_2253478_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047830.1_2253508_2254513_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047830.1_2254682_2255288_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
