assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	1	71372-71563	1	CRT	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL	Unclear	GGTGGGGCCCNCAACANAGANN	22	2	9	71451-71484|71451-71484|71451-71484|71451-71484|71451-71484|71451-71484|71451-71484|71451-71484|71506-71542	NZ_CP047788.1_294426-294393|NZ_CP047788.1_1033552-1033585|NZ_CP047788.1_1293007-1293040|NZ_CP047788.1_1326244-1326211|NZ_CP047788.1_1744297-1744264|NZ_CP047788.1_1819053-1819020|NZ_CP047788.1_2415034-2415001|NZ_CP047788.1_2557040-2557073|NZ_CP047788.1_1279777-1279813	NA	3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|49aa|up_0|NZ_CP047788.1_70920_71067_+,NA|31aa|down_5|NZ_CP047788.1_76948_77041_+,NA|37aa|down_9|NZ_CP047788.1_80046_80157_+	NA|101aa|up_9|NZ_CP047788.1_59101_59404_+	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_8|NZ_CP047788.1_59586_60279_+	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|731aa|up_7|NZ_CP047788.1_60275_62468_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|668aa|up_6|NZ_CP047788.1_62471_64475_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|400aa|up_5|NZ_CP047788.1_64487_65687_+	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|513aa|up_4|NZ_CP047788.1_65775_67314_-	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|101aa|up_3|NZ_CP047788.1_67680_67983_+	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|486aa|up_2|NZ_CP047788.1_67984_69442_+	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|476aa|up_1|NZ_CP047788.1_69454_70882_+	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|49aa|up_0|NZ_CP047788.1_70920_71067_+	NA	NA|316aa|down_0|NZ_CP047788.1_71704_72652_+	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|454aa|down_1|NZ_CP047788.1_72732_74094_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|177aa|down_2|NZ_CP047788.1_74263_74794_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|down_3|NZ_CP047788.1_75040_76111_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|down_4|NZ_CP047788.1_76177_76732_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|down_5|NZ_CP047788.1_76948_77041_+	NA	NA|167aa|down_6|NZ_CP047788.1_77122_77623_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|down_7|NZ_CP047788.1_77914_79228_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|down_8|NZ_CP047788.1_79229_79961_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|down_9|NZ_CP047788.1_80046_80157_+	NA
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	2	380201-380280	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCAACATAGAGAATTTCGTAAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|43aa|up_8|NZ_CP047788.1_372759_372888_+,NA|49aa|up_3|NZ_CP047788.1_375924_376071_+,NA	NA|589aa|up_9|NZ_CP047788.1_370660_372427_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|43aa|up_8|NZ_CP047788.1_372759_372888_+	NA	NA|258aa|up_7|NZ_CP047788.1_372887_373661_+	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|425aa|up_6|NZ_CP047788.1_373821_375096_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|141aa|up_5|NZ_CP047788.1_375180_375603_+	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|61aa|up_4|NZ_CP047788.1_375702_375885_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|49aa|up_3|NZ_CP047788.1_375924_376071_+	NA	NA|338aa|up_2|NZ_CP047788.1_376307_377321_-	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|381aa|up_1|NZ_CP047788.1_377630_378773_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|373aa|up_0|NZ_CP047788.1_378773_379892_+	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|223aa|down_0|NZ_CP047788.1_380573_381242_+	sd00006, TPR, Tetratricopeptide repeat	NA|826aa|down_1|NZ_CP047788.1_381243_383721_+	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|877aa|down_2|NZ_CP047788.1_384063_386694_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|87aa|down_3|NZ_CP047788.1_386756_387017_+	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|143aa|down_4|NZ_CP047788.1_387020_387449_+	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|103aa|down_5|NZ_CP047788.1_387463_387772_+	PRK13678, PRK13678, hypothetical protein; Provisional	NA|213aa|down_6|NZ_CP047788.1_388056_388695_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|308aa|down_7|NZ_CP047788.1_388697_389621_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|423aa|down_8|NZ_CP047788.1_389632_390901_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|208aa|down_9|NZ_CP047788.1_390900_391524_+	PRK05480, PRK05480, uridine/cytidine kinase; Provisional
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	3	884310-884402	2	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	AGTTATCAATTTATTGATTACTGTTTCTTA	30	0	0	NA	NA	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|117aa|up_9|NZ_CP047788.1_873873_874224_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP047788.1_874326_875064_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP047788.1_875063_875567_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP047788.1_875754_876030_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP047788.1_876464_877832_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP047788.1_877857_878190_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|417aa|up_3|NZ_CP047788.1_878176_879427_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1189aa|up_2|NZ_CP047788.1_879426_882993_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|244aa|up_1|NZ_CP047788.1_883139_883871_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP047788.1_883986_884220_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP047788.1_884525_885260_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP047788.1_885252_886179_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|329aa|down_2|NZ_CP047788.1_886171_887158_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|191aa|down_3|NZ_CP047788.1_887162_887735_-	PRK04424, PRK04424, transcription factor FapR	cas3|687aa|down_4|NZ_CP047788.1_887926_889987_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|549aa|down_5|NZ_CP047788.1_890176_891823_-	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	NA|125aa|down_6|NZ_CP047788.1_891837_892212_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP047788.1_892654_892843_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|214aa|down_8|NZ_CP047788.1_893223_893865_-	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|215aa|down_9|NZ_CP047788.1_893871_894516_-	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	4	1234621-1234700	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GGGCCCCAACATAGAAGCTGACGG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|414aa|up_9|NZ_CP047788.1_1224941_1226183_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047788.1_1226297_1227605_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047788.1_1227702_1228464_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047788.1_1228791_1229643_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047788.1_1229876_1230071_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047788.1_1230885_1231707_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047788.1_1231724_1232420_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047788.1_1232412_1233438_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047788.1_1233687_1233984_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047788.1_1233976_1234363_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047788.1_1234953_1235832_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|127aa|down_1|NZ_CP047788.1_1236009_1236390_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_2|NZ_CP047788.1_1236547_1236904_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_3|NZ_CP047788.1_1237047_1237368_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_4|NZ_CP047788.1_1237517_1238057_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_5|NZ_CP047788.1_1238139_1238856_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_6|NZ_CP047788.1_1239003_1239426_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_7|NZ_CP047788.1_1239824_1240319_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_8|NZ_CP047788.1_1240474_1241092_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|187aa|down_9|NZ_CP047788.1_1241164_1241725_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	5	1293021-1293105	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL	Unclear	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	1293047-1293079|1293047-1293079	NZ_CP047788.1_2522785-2522753|NZ_CP047788.1_1059768-1059800	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL	NA,NA|33aa|down_1|NZ_CP047788.1_1294565_1294664_-	NA|312aa|up_9|NZ_CP047788.1_1280174_1281110_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_8|NZ_CP047788.1_1281176_1282616_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_7|NZ_CP047788.1_1282623_1283109_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|281aa|up_6|NZ_CP047788.1_1283116_1283959_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_5|NZ_CP047788.1_1283964_1284897_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|up_4|NZ_CP047788.1_1285507_1288354_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|up_3|NZ_CP047788.1_1288361_1290347_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|up_2|NZ_CP047788.1_1290615_1290852_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|up_1|NZ_CP047788.1_1290848_1291499_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|up_0|NZ_CP047788.1_1291672_1292512_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|370aa|down_0|NZ_CP047788.1_1293280_1294391_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|33aa|down_1|NZ_CP047788.1_1294565_1294664_-	NA	NA|844aa|down_2|NZ_CP047788.1_1294705_1297237_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_3|NZ_CP047788.1_1297650_1298223_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_4|NZ_CP047788.1_1298283_1298958_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	cas3|361aa|down_5|NZ_CP047788.1_1298950_1300033_-	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|289aa|down_6|NZ_CP047788.1_1300396_1301263_-	TIGR00762, DegV, EDD domain protein, DegV family	NA|214aa|down_7|NZ_CP047788.1_1301406_1302048_+	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|352aa|down_8|NZ_CP047788.1_1302211_1303267_-	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|357aa|down_9|NZ_CP047788.1_1303584_1304655_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	6	2318957-2319215	1,5	PILER-CR,CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA,GCCAACACCACCGACACCAGAGGTACCA	17,28	0	0	NA	NA	NA:NA	2,2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|67aa|up_0|NZ_CP047788.1_2316243_2316444_+,NA|103aa|down_1|NZ_CP047788.1_2320648_2320957_-,NA|89aa|down_2|NZ_CP047788.1_2321100_2321367_-,NA|41aa|down_8|NZ_CP047788.1_2329688_2329811_-,NA|64aa|down_9|NZ_CP047788.1_2330245_2330437_+	NA|204aa|up_9|NZ_CP047788.1_2305077_2305689_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047788.1_2306239_2307517_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047788.1_2307993_2309817_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047788.1_2309955_2310372_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047788.1_2310602_2311295_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|244aa|up_4|NZ_CP047788.1_2311459_2312191_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047788.1_2312377_2313058_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047788.1_2313082_2314636_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047788.1_2314752_2316111_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_0|NZ_CP047788.1_2316243_2316444_+	NA	NA|289aa|down_0|NZ_CP047788.1_2319655_2320522_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047788.1_2320648_2320957_-	NA	NA|89aa|down_2|NZ_CP047788.1_2321100_2321367_-	NA	NA|603aa|down_3|NZ_CP047788.1_2321650_2323459_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047788.1_2323575_2323968_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047788.1_2323969_2326831_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_6|NZ_CP047788.1_2327137_2327911_+	pfam04507, DUF576, Csa1 family	NA|265aa|down_7|NZ_CP047788.1_2328890_2329685_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_8|NZ_CP047788.1_2329688_2329811_-	NA	NA|64aa|down_9|NZ_CP047788.1_2330245_2330437_+	NA
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	7	2401394-2401498	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGCATAAGCCTTTCTAGCTCATAAAATCCGCAGAAA	36	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047788.1_2401034_2401139_+,NA|35aa|down_2|NZ_CP047788.1_2403670_2403775_-	NA|453aa|up_9|NZ_CP047788.1_2390992_2392351_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047788.1_2392352_2393360_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047788.1_2393337_2394453_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047788.1_2394463_2395156_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047788.1_2395166_2395634_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047788.1_2395685_2396663_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047788.1_2396664_2397612_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047788.1_2398161_2399091_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047788.1_2399626_2400940_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047788.1_2401034_2401139_+	NA	NA|289aa|down_0|NZ_CP047788.1_2401638_2402505_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047788.1_2402831_2403518_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047788.1_2403670_2403775_-	NA	NA|480aa|down_3|NZ_CP047788.1_2403947_2405387_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047788.1_2405507_2406287_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047788.1_2406267_2406987_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047788.1_2406983_2407715_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047788.1_2407811_2409062_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047788.1_2409316_2409679_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047788.1_2409697_2410297_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	8	2556957-2557037	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAATTGGCGGGGCCCCAACATAGA	25	1	6	2556982-2557012|2556982-2557012|2556982-2557012|2556982-2557012|2556982-2557012|2556982-2557012	NZ_CP047788.1_414287-414317|NZ_CP047788.1_1033492-1033522|NZ_CP047788.1_1185589-1185559|NZ_CP047788.1_1230419-1230389|NZ_CP047788.1_82070-82100|NZ_CP047788.1_1279659-1279689	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP047788.1_2557093_2557264_-,NA|84aa|down_5|NZ_CP047788.1_2560404_2560656_-,NA|106aa|down_8|NZ_CP047788.1_2565780_2566098_-,NA|55aa|down_9|NZ_CP047788.1_2566342_2566507_-	NA|202aa|up_9|NZ_CP047788.1_2549853_2550459_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047788.1_2550626_2551631_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047788.1_2551659_2552166_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047788.1_2552167_2552662_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047788.1_2552724_2553984_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047788.1_2553980_2554466_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047788.1_2554479_2554926_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047788.1_2554931_2555165_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047788.1_2555171_2555771_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047788.1_2555790_2556813_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047788.1_2557093_2557264_-	NA	NA|117aa|down_1|NZ_CP047788.1_2557389_2557740_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047788.1_2557841_2559053_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047788.1_2559045_2559486_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047788.1_2559648_2560413_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047788.1_2560404_2560656_-	NA	NA|422aa|down_6|NZ_CP047788.1_2561044_2562310_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047788.1_2562426_2565594_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047788.1_2565780_2566098_-	NA	NA|55aa|down_9|NZ_CP047788.1_2566342_2566507_-	NA
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	9	2596919-2597044	8	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAGG	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_1|NZ_CP047788.1_2597938_2598121_+,NA|56aa|down_8|NZ_CP047788.1_2606469_2606637_-	NA|315aa|up_9|NZ_CP047788.1_2587191_2588136_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_8|NZ_CP047788.1_2588152_2588521_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|523aa|up_7|NZ_CP047788.1_2588773_2590341_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|270aa|up_6|NZ_CP047788.1_2590716_2591526_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047788.1_2591522_2592383_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047788.1_2592372_2593179_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|265aa|up_3|NZ_CP047788.1_2593183_2593978_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047788.1_2594226_2594664_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047788.1_2594677_2595076_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047788.1_2595424_2596861_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|60aa|down_0|NZ_CP047788.1_2597109_2597289_+	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|61aa|down_1|NZ_CP047788.1_2597938_2598121_+	NA	NA|555aa|down_2|NZ_CP047788.1_2598590_2600255_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047788.1_2600291_2600996_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047788.1_2601386_2601812_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047788.1_2602106_2602922_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|285aa|down_6|NZ_CP047788.1_2603132_2603987_+	pfam01551, Peptidase_M23, Peptidase family M23	NA|809aa|down_7|NZ_CP047788.1_2604046_2606473_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|56aa|down_8|NZ_CP047788.1_2606469_2606637_-	NA	NA|139aa|down_9|NZ_CP047788.1_2606879_2607296_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCF_009912595.1_ASM991259v1	NZ_CP047788	Staphylococcus aureus strain UP_1033 chromosome, complete genome	10	2808601-2808690	9	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGATTGAGAAGTCAGTCGAAAAAC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|52aa|down_2|NZ_CP047788.1_2809243_2809399_+,NA|68aa|down_3|NZ_CP047788.1_2809383_2809587_+,NA|128aa|down_4|NZ_CP047788.1_2809588_2809972_+,NA|127aa|down_8|NZ_CP047788.1_2813257_2813638_+	NA|188aa|up_9|NZ_CP047788.1_2798967_2799531_-	smart00793, AgrB, Accessory gene regulator B	NA|45aa|up_8|NZ_CP047788.1_2799766_2799901_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_7|NZ_CP047788.1_2800502_2801288_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_6|NZ_CP047788.1_2801648_2802275_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|405aa|up_5|NZ_CP047788.1_2802471_2803686_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_4|NZ_CP047788.1_2803710_2804454_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_3|NZ_CP047788.1_2804628_2804913_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_2|NZ_CP047788.1_2804988_2806605_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|391aa|up_1|NZ_CP047788.1_2806673_2807846_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|225aa|up_0|NZ_CP047788.1_2807859_2808534_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|73aa|down_0|NZ_CP047788.1_2808706_2808925_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|106aa|down_1|NZ_CP047788.1_2808929_2809247_+	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|52aa|down_2|NZ_CP047788.1_2809243_2809399_+	NA	NA|68aa|down_3|NZ_CP047788.1_2809383_2809587_+	NA	NA|128aa|down_4|NZ_CP047788.1_2809588_2809972_+	NA	NA|106aa|down_5|NZ_CP047788.1_2809972_2810290_+	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|290aa|down_6|NZ_CP047788.1_2810353_2811223_+	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|570aa|down_7|NZ_CP047788.1_2811236_2812946_+	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|127aa|down_8|NZ_CP047788.1_2813257_2813638_+	NA	NA|214aa|down_9|NZ_CP047788.1_2813634_2814276_+	pfam16560, SAPI, Putative mobile pathogenicity island
