The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	0	24287	2776423	protease,portal,holin,head,terminase,tail,capsid	Staphylococcus_phage(100.0%)	29	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114227.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	99.3	2.1e-68
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268733.1|6484_7129_+|tail	phage tail protein	tail	A0A1X9H0J2	Staphylococcus_phage	100.0	1.5e-119
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_001789580.1|7821_7983_+	hypothetical protein	NA	A0A0H3U330	Staphylococcus_phage	100.0	1.6e-22
WP_029549327.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0A2I6PDK2	Staphylococcus_phage	99.7	0.0e+00
WP_000567408.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_160199677.1|14065_17851_+	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.3	0.0e+00
WP_001153681.1|17840_17993_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040261.1|18039_18327_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_000539688.1|18384_18681_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|18830_19007_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_001791821.1|19059_19167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19218_19473_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|19484_20240_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000919350.1|20430_20922_+	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_020444758.1|21448_21907_+	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000727649.1|22001_22451_-	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_000702263.1|23133_23484_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23536_23797_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|24107_24287_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
>prophage 2
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	30221	32668	2776423		Staphylococcus_phage(100.0%)	3	NA	NA
WP_000991300.1|30221_31118_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645721.1|31118_31799_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|31795_32668_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
>prophage 3
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	37915	38317	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205103.1|37915_38317_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	1.3e-22
>prophage 4
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	42513	44543	2776423		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|42513_43074_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275721.1|43445_44543_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	2.5e-47
>prophage 5
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	48573	50857	2776423		Bacillus_virus(100.0%)	2	NA	NA
WP_000284427.1|48573_50043_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.3	3.2e-106
WP_000164017.1|50035_50857_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	4.4e-68
>prophage 6
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	54544	61311	2776423		Gordonia_phage(33.33%)	5	NA	NA
WP_000572878.1|54544_55840_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|55948_56251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272062.1|56422_57115_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|57111_59304_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774567.1|59307_61311_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	7.5e-114
>prophage 7
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	68369	73397	2776423		Catovirus(33.33%)	5	NA	NA
WP_001231459.1|68369_69317_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
WP_001147862.1|69397_70759_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.4e-103
WP_000548781.1|70928_71459_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|71705_72776_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|72842_73397_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 8
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	76849	77263	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001622129.1|76849_77263_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.8	5.1e-17
>prophage 9
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	82176	82806	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|82176_82806_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 10
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	88838	162191	2776423	portal,holin,head,terminase,tRNA,integrase,tail,capsid,plate	Staphylococcus_phage(84.06%)	89	83105:83120	104604:104619
83105:83120	attL	TTCTTCAGGTGTTTTA	NA	NA	NA	NA
WP_160199680.1|88838_89885_-|integrase	site-specific integrase	integrase	A0A0H3U2V9	Staphylococcus_phage	99.7	1.2e-200
WP_000392109.1|90095_90776_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_000705238.1|90915_91083_-	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000358224.1|91152_91872_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_001198673.1|92013_92232_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000435360.1|92244_92688_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	100.0	1.5e-75
WP_000939495.1|92702_92843_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	100.0	1.9e-16
WP_000772137.1|92835_93045_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_031925041.1|93101_93815_+	antirepressor	NA	A0A059T7N7	Staphylococcus_phage	98.7	2.1e-127
WP_000455728.1|93827_94037_+	hypothetical protein	NA	A0A2H4PQR1	Staphylococcus_phage	100.0	9.7e-33
WP_000048124.1|94050_94212_+	DUF1270 family protein	NA	C7F7L3	Staphylococcus_phage	100.0	1.9e-20
WP_000829611.1|94304_94634_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	1.4e-33
WP_062832884.1|94614_94875_+	DUF1108 family protein	NA	Q4ZAD8	Staphylococcus_virus	97.7	4.9e-42
WP_154440298.1|94883_95120_+	hypothetical protein	NA	D2JGJ9	Staphylococcus_phage	83.3	7.6e-34
WP_086037491.1|95112_95592_+	siphovirus Gp157 family protein	NA	Q4ZAD7	Staphylococcus_virus	99.4	1.2e-81
WP_001288247.1|95591_96365_+	AAA family ATPase	NA	A0EWP9	Staphylococcus_virus	100.0	1.6e-141
WP_078064329.1|96449_96950_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	99.4	2.1e-89
WP_160199681.1|96962_97634_+	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	99.1	6.4e-126
WP_000371250.1|97739_98597_-	DUF4393 domain-containing protein	NA	Q4ZBL8	Staphylococcus_phage	100.0	9.5e-159
WP_000190223.1|98661_99432_+	hypothetical protein	NA	A0A0N6WMQ8	Staphylococcus_phage	100.0	1.8e-116
WP_000803062.1|99441_100221_+	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_000256597.1|100214_100373_+	hypothetical protein	NA	Q4ZBL5	Staphylococcus_phage	100.0	3.4e-22
WP_001123684.1|100385_100607_+	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000401950.1|100616_101024_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
WP_001187264.1|101023_101209_+	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_000117792.1|101209_101569_+	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
WP_000022735.1|101568_101823_+	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_012068339.1|101822_102071_+	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_015977708.1|102085_102487_+	hypothetical protein	NA	D2JGL3	Staphylococcus_phage	100.0	9.2e-72
WP_000979209.1|102483_102831_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_160199682.1|102827_103136_+	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	98.0	2.6e-50
WP_001065023.1|103128_103365_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000185654.1|103369_103912_+	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_000195799.1|103948_104155_+	DUF1381 domain-containing protein	NA	A0A0N9BAZ6	Staphylococcus_phage	100.0	1.7e-21
WP_000132919.1|104151_104346_+	hypothetical protein	NA	A0A0N7E0T8	Staphylococcus_phage	100.0	3.5e-29
WP_001072795.1|104342_104546_+	hypothetical protein	NA	A0A0N9BAX5	Staphylococcus_phage	100.0	5.2e-31
WP_000608279.1|104538_104775_+	hypothetical protein	NA	A0A0N7E0U3	Staphylococcus_phage	100.0	1.3e-36
104604:104619	attR	TAAAACACCTGAAGAA	NA	NA	NA	NA
WP_000591891.1|104767_104941_+	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
WP_000989954.1|104941_105307_+	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_000989960.1|105307_105454_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000162702.1|105477_105900_+	RinA family phage transcriptional activator	NA	Q4ZBJ7	Staphylococcus_phage	100.0	1.2e-74
WP_000594088.1|106228_106723_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037586.1|106715_107939_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0H3U2R6	Staphylococcus_phage	100.0	7.5e-242
WP_000177425.1|107935_109360_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	99.8	6.2e-272
WP_033854646.1|109328_110279_+	hypothetical protein	NA	A0A0H3U2Z4	Staphylococcus_phage	98.7	5.2e-174
WP_001019221.1|110374_110959_+	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	100.0	7.3e-78
WP_000235168.1|110975_111890_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_000177351.1|112050_112401_+|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000483041.1|112412_112748_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151323.1|112734_113142_+	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_114647924.1|113154_113580_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	98.6	4.7e-74
WP_000057582.1|113580_114138_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|114203_114710_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880588.1|114754_115039_+	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	98.9	1.5e-44
WP_114647925.1|115042_118186_+|terminase	terminase	terminase	A0A059T7Q4	Staphylococcus_phage	93.7	0.0e+00
WP_042907189.1|118200_119142_+|tail	phage tail protein	tail	Q4ZBQ4	Staphylococcus_phage	99.4	2.2e-180
WP_160199683.1|119152_121039_+	peptidase	NA	A1KXA8	Staphylococcus_virus	99.8	0.0e+00
WP_064317455.1|121051_122950_+	hypothetical protein	NA	A0A2H4JCV8	uncultured_Caudovirales_phage	98.1	0.0e+00
WP_000259601.1|122949_124773_+|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	99.7	0.0e+00
WP_000705897.1|124772_125150_+	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	99.2	7.6e-60
WP_000782200.1|125153_125327_+	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000466778.1|125366_125666_+	DUF2951 domain-containing protein	NA	A0A0H4ITZ0	Staphylococcus_phage	100.0	7.6e-47
WP_114647927.1|125802_127677_+	CHAP domain-containing protein	NA	W5R999	Staphylococcus_phage	99.2	0.0e+00
WP_117171117.1|127689_128862_+|plate	BppU family phage baseplate upper protein	plate	Q8SDT0	Staphylococcus_phage	99.5	1.4e-197
WP_015978410.1|128867_129263_+	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	100.0	2.1e-68
WP_094756967.1|129318_129756_+|holin	phage holin	holin	Q8SDS8	Staphylococcus_phage	99.3	2.0e-72
WP_114647928.1|129736_131182_+	CHAP domain-containing protein	NA	A0A0H3U310	Staphylococcus_phage	99.0	5.9e-294
WP_011447034.1|131826_131928_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001005407.1|132254_132416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000163283.1|132549_133065_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000830380.1|133406_134216_+	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_001124427.1|134476_135295_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000435806.1|135272_135587_+	YfhH family protein	NA	NA	NA	NA	NA
WP_000535840.1|135601_137119_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000886472.1|137127_137964_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000379095.1|138224_139202_-	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000284741.1|139353_140391_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000251252.1|140693_141236_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000597236.1|141525_143262_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.3e-53
WP_001796444.1|143452_144547_-	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001011611.1|144839_146129_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000939524.1|146209_146665_+	peroxiredoxin	NA	NA	NA	NA	NA
WP_000869466.1|146670_147621_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000110011.1|147717_148164_+	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000063547.1|156945_158007_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649917.1|158265_159723_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|159709_160438_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001796463.1|160573_161716_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|161720_162191_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
>prophage 11
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	171256	171601	2776423		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|171256_171601_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 12
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	181234	181975	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|181234_181975_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 13
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	189703	193967	2776423		Staphylococcus_phage(80.0%)	5	NA	NA
WP_010922839.1|189703_190486_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821652.1|190766_191486_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	4.0e-25
WP_000713846.1|191520_192249_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	38.6	2.5e-27
WP_160199687.1|192402_193173_+	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.8	1.2e-43
WP_001236362.1|193211_193967_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
>prophage 14
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	197217	198347	2776423	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|197217_198347_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 15
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	201862	249577	2776423	tRNA,protease,transposase	Staphylococcus_phage(91.67%)	44	NA	NA
WP_098686295.1|201862_202991_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
WP_000627532.1|203193_203535_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	91.2	4.8e-53
WP_000669031.1|203575_204202_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	3.9e-85
WP_000070666.1|204277_205273_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	1.9e-73
WP_001796416.1|205353_206004_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	70.4	1.3e-30
WP_072468941.1|206306_206762_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	2.3e-79
WP_160199688.1|206920_208399_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	94.9	3.0e-277
WP_160199689.1|208403_209405_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	1.5e-184
WP_000718111.1|209401_209659_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	97.6	1.0e-44
WP_000672013.1|209724_210198_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001827685.1|210202_210949_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.6	6.6e-140
WP_000109912.1|211328_212921_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000933821.1|213292_214486_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366165.1|214610_215519_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000453324.1|215730_216564_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	3.5e-158
WP_000623468.1|216813_217167_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	91.5	2.7e-19
WP_001200545.1|217163_217529_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	99.2	6.2e-59
WP_000091443.1|217784_218087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|218345_219059_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000492904.1|219794_220415_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001168913.1|220581_221217_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001030473.1|221513_221957_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.9	1.1e-49
WP_001152694.1|221943_222387_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671060.1|222499_222970_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	85.2	3.8e-69
WP_000384171.1|223168_223393_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032834.1|223667_224522_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989113.1|224608_225901_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	94.9	3.0e-217
WP_000221174.1|225900_226215_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	96.2	1.8e-51
WP_001261660.1|226857_228360_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_029549219.1|228854_229886_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	1.2e-195
WP_000493880.1|229892_230525_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	97.6	2.1e-110
WP_001159030.1|230535_231717_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008551.1|231729_232194_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|232315_233317_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_014937042.1|233428_233548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|233550_234378_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|234948_235350_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764418.1|235466_236030_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.4	4.1e-102
WP_000526542.1|236026_236980_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025064.1|237089_238271_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_001108717.1|238562_240977_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_000836464.1|240998_241310_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	97.1	6.9e-51
WP_160199690.1|241634_248192_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	87.6	2.3e-292
WP_000284998.1|248308_249577_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	96.4	1.3e-55
>prophage 16
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	260692	266020	2776423		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091394.1|260692_261550_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	99.3	4.4e-71
WP_001048366.1|261578_262175_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_160199692.1|262195_266020_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	3.4e-83
>prophage 17
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	274760	276467	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862076.1|274760_276467_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	4.7e-274
>prophage 18
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	283072	285703	2776423	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186034.1|283072_284335_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	7.9e-85
WP_001279338.1|284428_285703_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 19
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	289471	293606	2776423		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808830.1|289471_291076_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	99.5	3.5e-114
WP_000291426.1|291062_292223_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553931.1|292336_292783_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174269.1|292862_293606_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	1.4e-17
>prophage 20
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	311380	314578	2776423		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226934.1|311380_314578_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.3	1.1e-135
>prophage 21
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	319511	321269	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|319511_321269_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 22
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	326153	334317	2776423		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080026.1|326153_326858_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_072468943.1|326857_328519_+	PAS domain-containing protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_029549212.1|329018_330506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199697.1|330798_333429_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114464.1|333444_334317_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	37.4	1.7e-41
>prophage 23
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	338232	349385	2776423	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|338232_339153_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_014937037.1|339245_339368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199698.1|339564_341502_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	1.7e-115
WP_000049154.1|341928_343422_+	amino acid permease	NA	NA	NA	NA	NA
WP_001807711.1|343650_344178_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.8	2.4e-11
WP_001125540.1|344206_344407_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|344453_344810_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|344951_345560_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280025.1|345578_346508_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|346512_346623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127572.1|346670_347972_+	trigger factor	NA	NA	NA	NA	NA
WP_000472293.1|348122_349385_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
>prophage 24
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	358953	361584	2776423	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425356.1|358953_361584_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	2.8e-153
>prophage 25
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	371516	406952	2776423	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005764.1|371516_372521_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019180.1|372522_373548_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|373570_374710_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|374728_374989_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_160199700.1|375263_377543_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594987.1|377746_380020_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.5	7.3e-65
WP_000364543.1|380041_380560_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.8	2.1e-28
WP_001058586.1|380988_383178_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869979.1|383189_383642_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|383638_384514_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|384974_386237_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044803.1|386252_388019_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	26.9	4.9e-16
WP_001827648.1|388350_388479_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682645.1|388478_389252_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102740.1|389412_390687_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000704122.1|390771_391194_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|391293_391476_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|391515_391662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985881.1|391898_392912_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_029549205.1|393223_394366_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000066103.1|394366_395485_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567023.1|396001_396670_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283324.1|396671_399149_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734073.1|399491_402122_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|402184_402445_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|402448_402877_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|402891_403200_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|403484_404123_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|404125_405049_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|405060_406329_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|406328_406952_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 26
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	413629	416017	2776423		Lactococcus_phage(50.0%)	2	NA	NA
WP_000542326.1|413629_414850_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	34.6	8.5e-52
WP_001622271.1|415264_416017_+	enterotoxin	NA	A0EX09	Staphylococcus_phage	40.9	1.9e-49
>prophage 27
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	423286	429450	2776423		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|423286_423748_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953292.1|423806_425954_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.8	3.5e-32
WP_001282573.1|426010_426985_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|427029_427281_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|427626_429450_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 28
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	432884	435992	2776423		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034717.1|432884_434717_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119019.1|434852_435992_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.0	3.0e-27
>prophage 29
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	442461	443409	2776423		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|442461_443409_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 30
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	446463	460191	2776423	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030077.1|446463_447855_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.5	1.6e-46
WP_072468919.1|448189_448813_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|448823_449642_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217237.1|449702_451502_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	1.3e-53
WP_001283055.1|451725_452832_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624564.1|452962_453640_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683915.1|453642_454743_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_001062177.1|454856_456203_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924214.1|456212_457103_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|457228_458014_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564318.1|458055_458919_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095258.1|458905_459316_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|459591_460191_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 31
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	466364	466988	2776423		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223009.1|466364_466988_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	2.1e-30
>prophage 32
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	472532	475344	2776423		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019698.1|472532_473879_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.4	5.3e-63
WP_000202176.1|473871_475344_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 33
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	482843	489413	2776423		Indivirus(66.67%)	6	NA	NA
WP_001286934.1|482843_484181_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.2e-43
WP_000159865.1|484173_484404_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183379.1|484381_485263_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.2	1.5e-10
WP_001124985.1|485693_486146_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942206.1|486161_487841_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291530.1|487991_489413_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.7	5.1e-40
>prophage 34
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	496240	497647	2776423		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|496240_497647_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 35
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	502293	503778	2776423		Cyanophage(100.0%)	1	NA	NA
WP_000105075.1|502293_503778_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 36
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	509442	523868	2776423		Bacillus_phage(28.57%)	14	NA	NA
WP_000447733.1|509442_510330_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183432.1|510407_510914_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273372.1|511005_511737_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368647.1|511729_512272_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159580.1|512264_513002_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064074.1|513134_513860_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	6.0e-45
WP_000987760.1|513840_515592_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.3	1.3e-21
WP_001622322.1|515843_516773_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033750.1|516765_518928_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	53.5	7.0e-49
WP_000476856.1|519018_519933_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001186906.1|520538_521084_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_001151999.1|521189_521438_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	6.4e-15
WP_001163808.1|521545_522499_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029549193.1|522488_523868_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
>prophage 37
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	533293	538783	2776423		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|533293_533566_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450565.1|533996_534569_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774683.1|534571_535297_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001827577.1|535313_536258_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.0	2.1e-10
WP_000442481.1|536349_536799_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	5.4e-28
WP_160199705.1|537008_537209_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269939.1|537616_538783_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
>prophage 38
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	542445	543021	2776423		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|542445_543021_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 39
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	546407	553914	2776423	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361547.1|546407_547610_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	1.9e-35
WP_000049921.1|547596_548568_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525057.1|548591_551285_+	ATP-dependent helicase	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858795.1|551606_552899_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000362215.1|553227_553914_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	31.4	1.2e-07
>prophage 40
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	557605	558232	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|557605_558232_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 41
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	567556	568435	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_160199709.1|567556_568435_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.1e-19
>prophage 42
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	606813	616202	2776423		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282160.1|606813_607518_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_160199710.1|607762_607957_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_001165814.1|607968_608220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404632.1|608256_609381_+	virulence factor	NA	NA	NA	NA	NA
WP_000995282.1|609396_609834_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934885.1|610257_611214_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175742.1|611413_611893_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.2	4.5e-73
WP_000166049.1|611907_612747_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	3.0e-48
WP_000159902.1|612832_613366_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|613358_613787_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473654.1|613798_614299_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|614298_614520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342148.1|614711_616202_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 43
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	619611	621623	2776423		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|619611_620271_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166793.1|620267_621623_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 44
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	629292	630084	2776423		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|629292_630084_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 45
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	633617	639228	2776423	lysis,protease	Lactobacillus_phage(33.33%)	8	NA	NA
WP_000138414.1|633617_634754_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.0	2.2e-33
WP_001796534.1|634785_635415_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215908.1|635433_635703_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|635865_636174_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|636344_636545_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876215.1|636741_637143_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000275771.1|637267_637885_+|protease	protease	protease	NA	NA	NA	NA
WP_000216938.1|637962_639228_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.5	9.5e-14
>prophage 46
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	647072	648674	2776423		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|647072_648674_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 47
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	653099	660693	2776423		Indivirus(25.0%)	8	NA	NA
WP_000194851.1|653099_653951_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.2	2.6e-15
WP_000974853.1|653957_654599_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077577.1|654738_656553_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	1.1e-153
WP_000171798.1|656757_657102_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000469973.1|657429_658416_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000946381.1|658408_659239_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000052306.1|659225_659999_+	ABC transporter ATP-binding protein	NA	A0A2H4UUX5	Bodo_saltans_virus	25.7	2.2e-05
WP_000571261.1|659991_660693_+	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	9.0e-14
>prophage 48
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	668187	670542	2776423		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153718.1|668187_668970_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.3	1.3e-26
WP_160199714.1|668971_669970_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.3	1.1e-33
WP_000604801.1|669975_670542_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	5.0e-23
>prophage 49
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	674861	676124	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_000283026.1|674861_676124_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.6	2.6e-96
>prophage 50
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	685782	690176	2776423		Bacillus_phage(50.0%)	2	NA	NA
WP_001657208.1|685782_688185_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.1	1.1e-92
WP_025173910.1|688184_690176_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	1.0e-115
>prophage 51
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	695799	697446	2776423		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|695799_697446_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 52
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	701112	702234	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160199716.1|701112_702234_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 53
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	706383	712038	2776423		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|706383_707007_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380739.1|707386_708250_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|708323_708428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688134.1|708424_709402_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.4	2.3e-185
WP_001085655.1|709558_709828_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|710280_710430_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082546.1|710520_712038_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	1.8e-91
>prophage 54
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	722174	726450	2776423		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|722174_722708_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027140.1|722846_723035_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000623460.1|723147_723750_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670290.1|723746_724838_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000243879.1|724841_725573_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001796717.1|725547_726450_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.8	3.7e-20
>prophage 55
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	731262	745720	2776423	terminase,integrase,portal,head	Staphylococcus_phage(57.14%)	23	728410:728427	751881:751898
728410:728427	attL	ATTCAATCATTAATATAT	NA	NA	NA	NA
WP_078064715.1|731262_732204_-|head	head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.4	5.0e-52
WP_160199719.1|732733_734182_-|portal	phage portal protein	portal	Q4ZE36	Staphylococcus_virus	69.4	3.7e-195
WP_000207540.1|734194_735469_-|terminase	PBSX family phage terminase large subunit	terminase	Q4ZE37	Staphylococcus_virus	76.4	4.2e-195
WP_000090969.1|735455_735884_-	helix-turn-helix domain-containing protein	NA	A1EAE0	Streptococcus_phage	45.1	1.1e-25
WP_000653928.1|736035_736524_-	hypothetical protein	NA	R9TMH4	Paenibacillus_phage	27.7	1.9e-07
WP_000835356.1|736800_737265_-	hypothetical protein	NA	C9E2P0	Enterococcus_phage	43.7	2.5e-20
WP_025174108.1|737261_737369_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	84.4	1.4e-06
WP_000185174.1|737510_738041_-	nucleotide pyrophosphohydrolase	NA	A0A1P8VVP1	Streptococcus_phage	39.1	8.0e-23
WP_000714365.1|738349_738508_-	hypothetical protein	NA	A0A0E3T9L7	Staphylococcus_phage	90.4	7.9e-19
WP_000945229.1|738522_738813_-	hypothetical protein	NA	A0A223LIA9	Staphylococcus_phage	58.1	5.5e-18
WP_000929467.1|738813_739752_-	DnaD domain protein	NA	A0A1P8L6F0	Staphylococcus_phage	48.1	4.8e-47
WP_076679818.1|739765_740260_-	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	94.0	9.9e-84
WP_000818736.1|740340_741120_-	ATP-binding protein	NA	A0A1W6JPW0	Staphylococcus_phage	88.8	9.3e-129
WP_001004328.1|741120_741657_-	hypothetical protein	NA	A0A0H3U480	Staphylococcus_phage	81.4	1.1e-75
WP_000786635.1|741661_741928_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	53.6	3.9e-18
WP_160199720.1|741917_742235_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	80.6	2.1e-39
WP_000072840.1|742321_742483_-	DUF1270 family protein	NA	R4IH12	Staphylococcus_phage	69.8	1.1e-12
WP_000789021.1|742653_742935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000842950.1|742959_743196_-	DUF739 family protein	NA	A0A2I6PDH8	Staphylococcus_phage	82.4	7.4e-29
WP_001083979.1|743357_743723_+	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	47.9	1.8e-21
WP_000554409.1|743869_744253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160199721.1|744264_744960_+	hypothetical protein	NA	A0A2H4J5B8	uncultured_Caudovirales_phage	50.9	1.8e-06
WP_000146714.1|745012_745720_+|integrase	tyrosine-type recombinase/integrase	integrase	V9QKF1	Oenococcus_phage	26.2	4.7e-10
751881:751898	attR	ATATATTAATGATTGAAT	NA	NA	NA	NA
>prophage 56
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	750337	750814	2776423		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448081.1|750337_750814_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	2.7e-22
>prophage 57
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	756757	763239	2776423		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103747.1|756757_757576_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
WP_001072707.1|758050_758593_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516248.1|758598_760608_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	29.5	3.1e-59
WP_000073337.1|760620_763239_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.5	8.5e-41
>prophage 58
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	772653	773697	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|772653_773697_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 59
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	777897	783441	2776423		Bacillus_virus(33.33%)	4	NA	NA
WP_000664766.1|777897_779184_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089944.1|779183_780449_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	2.0e-40
WP_001293306.1|780479_781193_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_072468899.1|781197_783441_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	9.1e-84
>prophage 60
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	788579	800394	2776423	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|788579_789551_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282307.1|789565_790483_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|790652_791003_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043642.1|791389_793507_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020856.1|793511_793829_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|793825_794110_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097463.1|794130_795306_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036631.1|795326_795794_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_078064710.1|796083_800394_-	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 61
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	804667	805438	2776423		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|804667_805438_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 62
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	810211	823884	2776423	tRNA,protease	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|810211_811615_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|811680_812226_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015604.1|812222_813119_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	4.6e-31
WP_000195251.1|813536_814844_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001622395.1|814999_817075_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	2.3e-105
WP_000620185.1|817248_818121_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672866.1|818292_819537_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041652.1|819564_820683_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	1.2e-49
WP_000110253.1|820911_821820_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|821841_823008_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176404.1|823116_823884_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 63
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	837266	839323	2776423		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|837266_837998_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|838112_838346_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|838588_839323_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 64
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	849693	851688	2776423		Moumouvirus(100.0%)	1	NA	NA
WP_000579546.1|849693_851688_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 65
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	854835	855771	2776423	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161292.1|854835_855771_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 66
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	860775	863032	2776423		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722167.1|860775_861975_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.7	2.7e-42
WP_000933956.1|862190_862409_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_160199725.1|862408_863032_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
>prophage 67
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	866398	867010	2776423		Pandoravirus(100.0%)	1	NA	NA
WP_001040247.1|866398_867010_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	2.1e-27
>prophage 68
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	870977	875588	2776423		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|870977_872078_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767035.1|872079_873354_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016170.1|873371_874253_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	6.0e-31
WP_001178613.1|874280_875588_-	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 69
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	879520	882274	2776423	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_029549171.1|879520_882274_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	4.7e-90
>prophage 70
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	901844	902033	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245799.1|901844_902033_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	8.5e-20
>prophage 71
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	910917	914961	2776423		Staphylococcus_phage(66.67%)	6	NA	NA
WP_000192697.1|910917_911130_-	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	69.2	8.1e-19
WP_000765705.1|911113_911260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857478.1|911927_912887_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.6	3.3e-35
WP_000231332.1|913340_913574_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032820.1|914182_914368_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000669539.1|914610_914961_-	complement inhibitor SCIN family protein	NA	A7TWS0	Staphylococcus_phage	51.8	6.4e-21
>prophage 72
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	926433	930991	2776423		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|926433_926748_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249279.1|926920_929269_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	8.5e-16
WP_000161953.1|929278_930991_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	1.8e-15
>prophage 73
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	936004	937063	2776423	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|936004_937063_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 74
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	949007	951904	2776423		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|949007_949490_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263798.1|949491_950034_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814568.1|950103_950493_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|950495_950750_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757595.1|950974_951904_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.3e-12
>prophage 75
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	963422	965270	2776423		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|963422_965270_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 76
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	973406	977047	2776423		Mycoplasma_phage(50.0%)	4	NA	NA
WP_000433547.1|973406_974501_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.8e-37
WP_001020625.1|974513_975053_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_160199728.1|975196_975472_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|975640_977047_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
>prophage 77
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	981689	982241	2776423		Synechococcus_phage(100.0%)	1	NA	NA
WP_160199729.1|981689_982241_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 78
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	988358	992737	2776423		Bacillus_virus(50.0%)	5	NA	NA
WP_001289619.1|988358_988592_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040046.1|988827_990546_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|990548_990815_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505969.1|990968_991511_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685080.1|991564_992737_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	2.0e-74
>prophage 79
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	995853	1010614	2776423		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_160199731.1|995853_997254_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	2.0e-12
WP_000273264.1|997246_998053_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101904.1|998318_999566_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709286.1|999587_1001066_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	1.9e-77
WP_000238657.1|1001080_1001647_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	39.6	8.0e-29
WP_000030827.1|1001649_1002678_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	1.2e-62
WP_000483713.1|1002670_1004155_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032752.1|1004133_1006323_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666803.1|1006315_1006987_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|1006988_1007252_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174048.1|1007251_1007956_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.2	4.0e-46
WP_001010404.1|1007959_1009084_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_001622461.1|1009070_1009553_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_000225844.1|1009753_1010614_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.8	2.0e-39
>prophage 80
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1020990	1024755	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074512.1|1020990_1024755_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	8.7e-55
>prophage 81
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1028407	1029409	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676571.1|1028407_1029409_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 82
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1037714	1041240	2776423		Enterococcus_phage(50.0%)	6	NA	NA
WP_001796516.1|1037714_1038005_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	3.4e-07
WP_001794249.1|1038068_1038200_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081317.1|1038246_1039206_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1039697_1040054_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001796515.1|1040220_1040511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571169.1|1040598_1041240_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	3.8e-19
>prophage 83
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1051380	1056591	2776423	protease	Pithovirus(33.33%)	3	NA	NA
WP_001796514.1|1051380_1053705_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000928413.1|1053923_1054727_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049954.1|1055028_1056591_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.3e-36
>prophage 84
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1075517	1077326	2776423		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1075517_1077326_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 85
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1083140	1085110	2776423		Bacillus_virus(100.0%)	2	NA	NA
WP_000427779.1|1083140_1084121_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001067039.1|1084123_1085110_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
>prophage 86
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1088761	1090775	2776423		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_001258350.1|1088761_1089703_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	2.1e-05
WP_000140054.1|1089692_1090775_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	2.9e-19
>prophage 87
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1098707	1103334	2776423		Agrobacterium_phage(50.0%)	2	NA	NA
WP_000353969.1|1098707_1101317_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044231.1|1101519_1103334_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 88
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1108624	1112278	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_000154909.1|1108624_1112278_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.7	3.5e-24
>prophage 89
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1123033	1130137	2776423		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185324.1|1123033_1123963_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	2.8e-39
WP_000138487.1|1124411_1125656_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1125764_1126955_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838022.1|1127262_1128390_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1128750_1129128_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035064.1|1129543_1130137_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.5e-25
>prophage 90
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1140071	1143699	2776423		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009695.1|1140071_1141547_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	36.7	1.2e-47
WP_000046076.1|1141677_1142886_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143497.1|1143339_1143699_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
>prophage 91
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1147743	1150412	2776423		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1147743_1148958_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129643.1|1148954_1150412_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	8.9e-40
>prophage 92
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1163620	1167143	2776423		environmental_halophage(50.0%)	3	NA	NA
WP_000807674.1|1163620_1164862_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.8e-110
WP_000205572.1|1164976_1166284_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1166381_1167143_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 93
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1170627	1179788	2776423		Streptococcus_phage(40.0%)	13	NA	NA
WP_000571205.1|1170627_1171653_-	methionine ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	1.8e-26
WP_001065802.1|1171902_1172199_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001018963.1|1172191_1172578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001796505.1|1173016_1173895_-	DUF1963 domain-containing protein	NA	NA	NA	NA	NA
WP_000290492.1|1174072_1174453_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_000589550.1|1174610_1174967_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147956.1|1175110_1175431_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	35.1	9.1e-06
WP_000422908.1|1175580_1176120_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150033.1|1176202_1176919_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	3.4e-16
WP_160199739.1|1177066_1177489_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1177887_1178382_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255550.1|1178537_1179155_+	amino acid transporter	NA	NA	NA	NA	NA
WP_016187137.1|1179227_1179788_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
>prophage 94
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1183191	1184435	2776423		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1183191_1183392_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001622483.1|1183748_1184435_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	2.9e-33
>prophage 95
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1193731	1202488	2776423		Staphylococcus_phage(50.0%)	8	NA	NA
WP_001806213.1|1193731_1194460_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	2.1e-18
WP_000999093.1|1194744_1195359_-	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_029549295.1|1196325_1196790_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	99.4	3.3e-81
WP_001050026.1|1196811_1199184_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.7	7.3e-92
WP_001165966.1|1199217_1199958_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_000556760.1|1200086_1200320_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1200386_1200845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1201183_1202488_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 96
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1213531	1219403	2776423		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1213531_1214119_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1214681_1215626_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1215736_1216732_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1216728_1217640_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1218467_1219403_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 97
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1223563	1226392	2776423		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662699.1|1223563_1226392_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.7	0.0e+00
>prophage 98
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1229710	1230550	2776423		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000749393.1|1229710_1230550_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 99
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1236631	1242345	2776423		Streptococcus_phage(66.67%)	5	NA	NA
WP_001622509.1|1236631_1237714_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	3.4e-44
WP_000686346.1|1238078_1238945_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1239088_1239730_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258151.1|1239901_1240957_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460988.1|1241274_1242345_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 100
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1251629	1274737	2776423		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000616861.1|1251629_1252391_-	ATP-binding cassette domain-containing protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.6	2.7e-16
WP_001245581.1|1252387_1253344_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876313.1|1253330_1254302_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	79.9	1.0e-140
WP_000562500.1|1254676_1255648_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	3.2e-171
WP_160199740.1|1255765_1257871_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.6	0.0e+00
WP_000692521.1|1257833_1258232_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1259033_1259900_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1259919_1260420_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193753.1|1260760_1262266_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.6e-58
WP_031785486.1|1262343_1262445_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429016.1|1262535_1263453_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	2.1e-07
WP_000197263.1|1264140_1264689_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663021.1|1264846_1265905_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.9	2.6e-20
WP_000606781.1|1266144_1267659_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589263.1|1267651_1268629_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	5.4e-25
WP_000983676.1|1268849_1270631_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525111.1|1270642_1272526_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1272796_1274737_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 101
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1277881	1287726	2776423		Pandoravirus(12.5%)	12	NA	NA
WP_001217805.1|1277881_1279033_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_000604517.1|1279016_1279610_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	8.9e-39
WP_000446726.1|1279960_1280629_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	7.4e-66
WP_000941336.1|1280630_1281050_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062976.1|1281053_1281767_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637683.1|1281865_1282450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093554.1|1282729_1283170_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1283510_1283984_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1283958_1284645_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1284644_1285700_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702775.1|1285771_1286755_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000931231.1|1286886_1287726_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	1.9e-55
>prophage 102
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1299347	1300721	2776423		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952028.1|1299347_1300721_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.8	2.3e-45
>prophage 103
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1305697	1311977	2776423		Bacillus_phage(33.33%)	6	NA	NA
WP_000857605.1|1305697_1307371_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737145.1|1307367_1308999_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	8.8e-12
WP_000469886.1|1309217_1310093_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358502.1|1310264_1310948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148819.1|1310950_1311409_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820900.1|1311410_1311977_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 104
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1318991	1319465	2776423		Pandoravirus(100.0%)	1	NA	NA
WP_000844823.1|1318991_1319465_-	cupin	NA	A0A291AU44	Pandoravirus	38.2	3.2e-15
>prophage 105
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1324727	1325525	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1324727_1325525_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 106
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1330251	1331013	2776423		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|1330251_1331013_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 107
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1335392	1336436	2776423		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030756.1|1335392_1336436_-	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	28.0	4.4e-17
>prophage 108
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1342959	1343757	2776423		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1342959_1343757_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 109
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1346986	1350945	2776423		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1346986_1348714_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793048.1|1349134_1350430_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	1.5e-14
WP_000832260.1|1350546_1350945_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 110
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1357880	1358624	2776423		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1357880_1358624_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 111
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1369710	1370271	2776423	integrase	Streptococcus_phage(100.0%)	1	1363864:1363878	1373858:1373872
1363864:1363878	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044966.1|1369710_1370271_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|1369710_1370271_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
1373858:1373872	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 112
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1383582	1386936	2776423		Tupanvirus(50.0%)	3	NA	NA
WP_001200749.1|1383582_1384593_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.6	1.5e-33
WP_001796423.1|1385091_1385613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1385640_1386936_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 113
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1395123	1396446	2776423		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860583.1|1395123_1396446_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.3	9.7e-110
>prophage 114
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1407749	1408406	2776423		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|1407749_1408406_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 115
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1412073	1415394	2776423		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100830.1|1412073_1413450_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	1.8e-21
WP_000347068.1|1413993_1415394_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	2.1e-54
>prophage 116
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1438696	1439359	2776423		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067257.1|1438696_1439359_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	36.9	3.1e-24
>prophage 117
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1445905	1447093	2776423		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250816.1|1445905_1447093_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.8	8.8e-46
>prophage 118
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1450123	1461077	2776423		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1450123_1452205_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1452327_1452798_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1452863_1453277_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1453374_1453629_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001827373.1|1453765_1457362_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	1.9e-67
WP_000918680.1|1457525_1461077_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 119
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1464760	1469543	2776423	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1464760_1465309_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1465321_1465504_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1465559_1465703_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872878.1|1465817_1466387_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664731.1|1466467_1466992_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1466991_1467738_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370179.1|1467745_1468150_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631980.1|1468142_1469543_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
>prophage 120
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1475554	1478011	2776423	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897128.1|1475554_1478011_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.3	4.7e-134
>prophage 121
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1496973	1507246	2776423	tRNA,protease	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1496973_1498461_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_031785444.1|1498513_1498606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613718.1|1498999_1499476_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154303.1|1499472_1499838_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167941.1|1499815_1500619_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	30.8	5.1e-21
WP_000057594.1|1500834_1501767_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1501945_1502827_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167886.1|1503055_1505149_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1505406_1505946_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176731.1|1505950_1507246_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.2	1.4e-12
>prophage 122
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1516502	1518967	2776423		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1516502_1517468_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252527.1|1517614_1518967_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 123
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1524851	1527949	2776423	tRNA	Hokovirus(50.0%)	2	NA	NA
WP_001051142.1|1524851_1526825_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
WP_000279924.1|1527109_1527949_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.4	1.3e-56
>prophage 124
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1531855	1532473	2776423		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272125.1|1531855_1532473_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	7.1e-47
>prophage 125
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1541586	1543284	2776423		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109055.1|1541586_1543284_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.1	8.7e-55
>prophage 126
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1559933	1566158	2776423		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170274.1|1559933_1560938_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
WP_000825537.1|1561271_1562114_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000467994.1|1562150_1562810_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569277.1|1562813_1563839_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.7	6.3e-32
WP_001036647.1|1564117_1565260_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634103.1|1565252_1566158_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	3.2e-48
>prophage 127
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1588926	1591735	2776423		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072579.1|1588926_1590186_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.1	2.2e-47
WP_000028601.1|1590178_1591735_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.7	1.1e-282
>prophage 128
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1602073	1603807	2776423	transposase	Paenibacillus_phage(50.0%)	2	NA	NA
WP_000159788.1|1602073_1602400_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	2.5e-11
WP_000041875.1|1603102_1603807_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	1.5e-29
>prophage 129
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1609786	1612819	2776423		Hokovirus(50.0%)	2	NA	NA
WP_000424959.1|1609786_1611328_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	33.2	9.5e-24
WP_000264071.1|1611352_1612819_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 130
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1621775	1623299	2776423		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930500.1|1621775_1623299_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 131
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1629782	1638217	2776423		Staphylococcus_phage(60.0%)	10	NA	NA
WP_000237578.1|1629782_1629920_+	hypothetical protein	NA	Q4ZE80	Staphylococcus_phage	64.4	9.8e-10
WP_000897044.1|1631594_1631837_-	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000934799.1|1631888_1632392_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1632412_1632709_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1632952_1633144_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218729.1|1633229_1634327_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1634338_1634542_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373079.1|1634571_1635453_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001621659.1|1635606_1636452_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655695.1|1637113_1638217_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.1	1.1e-10
>prophage 132
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1648137	1648980	2776423		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_160199759.1|1648137_1648980_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	2.9e-11
>prophage 133
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1668759	1671494	2776423		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_160199761.1|1668759_1669782_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191950.1|1669759_1670704_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000854324.1|1670693_1671494_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	41.9	6.8e-42
>prophage 134
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1689734	1690412	2776423		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911015.1|1689734_1690412_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.1	1.0e-30
>prophage 135
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1698422	1714985	2776423	transposase	Streptococcus_phage(71.43%)	21	NA	NA
WP_001105991.1|1698422_1699097_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_049287895.1|1700033_1700351_-	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	79.4	4.6e-26
WP_075100294.1|1700792_1701656_-	toxin zeta	NA	NA	NA	NA	NA
WP_002331065.1|1701657_1701930_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	96.7	5.4e-07
WP_000527318.1|1701946_1702156_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	98.6	1.4e-31
WP_002334978.1|1702254_1703151_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	97.2	9.0e-152
WP_157135214.1|1703413_1703581_-	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	98.2	3.0e-24
WP_001096887.1|1704261_1705056_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_000627289.1|1705148_1705679_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_160199765.1|1705675_1706584_-	aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	99.7	8.2e-177
WP_000662263.1|1706616_1707351_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000228166.1|1707331_1708201_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000084169.1|1708303_1708510_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_001070743.1|1708570_1709221_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001086633.1|1709230_1710361_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000573642.1|1710362_1711067_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.0	1.3e-25
WP_011251346.1|1711317_1712211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106019.1|1712254_1712929_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	100.0	8.1e-129
WP_160199766.1|1713190_1714165_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_001791613.1|1714376_1714469_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000119691.1|1714637_1714985_-	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	36.8	6.4e-13
>prophage 136
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1722929	1723556	2776423		Bacillus_virus(100.0%)	1	NA	NA
WP_000593103.1|1722929_1723556_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	8.0e-22
>prophage 137
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1726598	1732912	2776423	transposase	Clostridium_phage(25.0%)	8	NA	NA
WP_001566953.1|1726598_1727207_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.5	3.4e-17
WP_000733289.1|1727575_1728421_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	NA	A0A1B0VBP7	Salmonella_phage	34.4	1.2e-31
WP_001096385.1|1728527_1730285_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284653.1|1730274_1730655_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690637.1|1730918_1731497_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
WP_001037130.1|1731719_1731905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032603369.1|1731897_1732158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105991.1|1732237_1732912_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
>prophage 138
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1743283	1747723	2776423		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549268.1|1743283_1747723_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 139
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1759685	1761347	2776423		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570084.1|1759685_1760345_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	36.6	3.4e-23
WP_000736796.1|1760396_1761347_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	2.6e-16
>prophage 140
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1769873	1771310	2776423		Pandoravirus(100.0%)	1	NA	NA
WP_000164000.1|1769873_1771310_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.8	4.8e-30
>prophage 141
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1775067	1779607	2776423		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925389.1|1775067_1776807_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.6e-62
WP_000608820.1|1777067_1777742_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_160199770.1|1777885_1779607_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.7e-11
>prophage 142
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1788934	1789978	2776423		Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000645598.1|1788934_1789978_-	galactitol-1-phosphate 5-dehydrogenase	NA	A0A0K0KVL7	Prochlorococcus_phage	27.7	2.7e-14
>prophage 143
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1797194	1798724	2776423		Vibrio_phage(100.0%)	1	NA	NA
WP_160199771.1|1797194_1798724_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	49.4	1.1e-11
>prophage 144
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1811247	1812753	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008393.1|1811247_1812753_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	26.1	3.5e-39
>prophage 145
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1823899	1829255	2776423		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1823899_1826149_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_160199778.1|1826736_1827702_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_160199779.1|1827698_1829255_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	30.1	2.2e-12
>prophage 146
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1839658	1841720	2776423		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818909.1|1839658_1840756_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166909.1|1841141_1841720_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	1.3e-13
>prophage 147
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1850271	1851864	2776423		Planktothrix_phage(100.0%)	1	NA	NA
WP_160199783.1|1850271_1851864_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.9	3.0e-17
>prophage 148
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1868458	1869643	2776423		Klosneuvirus(100.0%)	1	NA	NA
WP_160199784.1|1868458_1869643_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.1	3.1e-35
>prophage 149
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1874501	1881677	2776423		Tupanvirus(100.0%)	1	NA	NA
WP_001656945.1|1874501_1881677_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.9	1.3e-67
>prophage 150
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1886525	1889524	2776423		Bacillus_virus(50.0%)	4	NA	NA
WP_000590842.1|1886525_1887266_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	1.7e-39
WP_000171926.1|1887607_1888120_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356967.1|1888299_1888503_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013475.1|1888564_1889524_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 151
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1892864	1895349	2776423		Catovirus(50.0%)	2	NA	NA
WP_000723456.1|1892864_1894010_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	4.1e-24
WP_000779511.1|1894086_1895349_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	1.2e-21
>prophage 152
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1902367	1908932	2776423		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1902367_1903492_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_160199786.1|1903495_1904605_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1904617_1905646_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940779.1|1905635_1907459_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.9	6.1e-30
WP_000565293.1|1907478_1908243_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037324.1|1908245_1908932_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
>prophage 153
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1917763	1918537	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1917763_1918537_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 154
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1926572	1927172	2776423		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1926572_1927172_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 155
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1932120	1933101	2776423		Catovirus(100.0%)	1	NA	NA
WP_001796610.1|1932120_1933101_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.4	2.7e-48
>prophage 156
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1936953	1938156	2776423		Tupanvirus(100.0%)	1	NA	NA
WP_001223695.1|1936953_1938156_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	6.7e-09
>prophage 157
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1946422	1950632	2776423		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570806.1|1946422_1947403_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.4	1.6e-40
WP_001045124.1|1947633_1948626_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924996.1|1948641_1949637_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136627.1|1949633_1950632_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	26.9	2.0e-14
>prophage 158
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	1980986	1982116	2776423	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|1980986_1982116_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 159
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2000011	2010007	2776423		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2000011_2000812_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104170.1|2001199_2001988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060151.1|2001988_2003323_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2003315_2005142_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2005154_2005856_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095327.1|2007045_2008329_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000375647.1|2008606_2010007_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 160
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2016693	2025732	2776423	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884335.1|2016693_2017980_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177475.1|2018357_2019872_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.0	2.6e-90
WP_000449218.1|2020197_2021010_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_001656967.1|2021097_2023761_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	1.3e-118
WP_160199792.1|2023797_2025732_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.7	9.7e-143
>prophage 161
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2035820	2038949	2776423		Faecalibacterium_phage(33.33%)	5	NA	NA
WP_000742837.1|2035820_2036660_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2036976_2037330_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2037397_2037793_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054109.1|2038052_2038622_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2038748_2038949_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
>prophage 162
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2042262	2043021	2776423		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2042262_2043021_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 163
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2062139	2063153	2776423		Faustovirus(100.0%)	1	NA	NA
WP_000639196.1|2062139_2063153_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	21.9	1.4e-07
>prophage 164
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2075548	2076241	2776423		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185857.1|2075548_2076241_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	37.6	1.7e-28
>prophage 165
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2105599	2107459	2776423		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125632.1|2105599_2107459_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	1.3e-14
>prophage 166
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2134519	2135275	2776423		Planktothrix_phage(100.0%)	1	NA	NA
WP_160199801.1|2134519_2135275_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.4	1.8e-31
>prophage 167
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2138711	2139209	2776423		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|2138711_2139209_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 168
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2144243	2146627	2776423		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071717.1|2144243_2146094_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
WP_000173331.1|2146090_2146627_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 169
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2151503	2161615	2776423	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000038850.1|2151503_2153213_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	2.9e-58
WP_000011688.1|2153490_2153703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001028779.1|2153982_2154426_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172328.1|2154619_2156215_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	37.0	6.9e-78
WP_001796575.1|2156277_2156607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2156902_2158399_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031407.1|2158594_2159485_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237623.1|2159607_2160024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160199803.1|2160277_2161615_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.7	8.5e-21
>prophage 170
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2189787	2194669	2776423		Staphylococcus_phage(66.67%)	4	NA	NA
WP_000751266.1|2189787_2190489_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	3.1e-38
WP_000996740.1|2190764_2191253_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379831.1|2191758_2193570_+	acetyltransferase	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.7e-35
WP_000725216.1|2193931_2194669_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.7	6.1e-05
>prophage 171
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2201974	2206165	2776423		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161365.1|2201974_2202973_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	3.5e-35
WP_000076662.1|2203062_2203269_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024132.1|2203756_2206165_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.7	4.9e-128
>prophage 172
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2215408	2218401	2776423	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_029549251.1|2215408_2217517_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.6	1.2e-117
WP_000262599.1|2217879_2218401_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
>prophage 173
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2224826	2231209	2776423		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062662.1|2224826_2226566_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473692.1|2226865_2228932_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206034.1|2229311_2229722_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240665.1|2229763_2230108_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228154.1|2230240_2231209_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.9	1.2e-11
>prophage 174
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2240504	2241497	2776423		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161536.1|2240504_2241497_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 175
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2250911	2251607	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382895.1|2250911_2251607_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	38.0	8.8e-38
>prophage 176
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2270773	2277960	2776423		Bacillus_phage(66.67%)	6	NA	NA
WP_000721337.1|2270773_2271640_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
WP_000217713.1|2271766_2272075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000678763.1|2272214_2272481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072468810.1|2272764_2274573_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.7	2.4e-95
WP_000755944.1|2274704_2275097_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_160199808.1|2275098_2277960_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	4.0e-28
>prophage 177
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2285790	2286486	2776423		Bacillus_phage(100.0%)	1	NA	NA
WP_000217460.1|2285790_2286486_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	6.6e-09
>prophage 178
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2291923	2292742	2776423		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824951.1|2291923_2292742_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	29.5	3.2e-10
>prophage 179
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2300681	2302239	2776423		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173856.1|2300681_2301497_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	4.7e-14
WP_000590515.1|2301489_2302239_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
>prophage 180
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2308471	2312898	2776423		Bacillus_virus(50.0%)	4	NA	NA
WP_000923514.1|2308471_2309134_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.0	2.7e-20
WP_000072159.1|2309126_2309903_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026186.1|2310296_2311484_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700906.1|2311545_2312898_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	35.8	6.6e-13
>prophage 181
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2316533	2317760	2776423		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948985.1|2316533_2317760_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	39.6	8.6e-20
>prophage 182
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2336132	2342263	2776423		Bacillus_phage(66.67%)	6	NA	NA
WP_001176860.1|2336132_2337275_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	6.9e-56
WP_000779354.1|2337542_2337929_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482647.1|2338062_2338170_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000301894.1|2338196_2338364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001064831.1|2338741_2340481_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.9	8.7e-34
WP_000488492.1|2340529_2342263_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	2.1e-32
>prophage 183
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2345724	2351503	2776423		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971558.1|2345724_2346840_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	25.0	1.2e-20
WP_000286884.1|2346850_2347543_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200952.1|2347553_2348021_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_001056918.1|2348079_2349057_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	1.4e-142
WP_000916696.1|2349058_2350006_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	78.7	4.0e-142
WP_000594516.1|2350573_2351503_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
>prophage 184
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2359316	2360048	2776423		Bacillus_virus(100.0%)	1	NA	NA
WP_000615468.1|2359316_2360048_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	3.4e-24
>prophage 185
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2375889	2377449	2776423		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|2375889_2377449_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 186
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2410119	2416680	2776423		Staphylococcus_phage(25.0%)	8	NA	NA
WP_000340143.1|2410119_2410848_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	1.5e-27
WP_000372850.1|2410981_2411545_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160199817.1|2411721_2412177_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000977035.1|2412173_2412617_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000477342.1|2412783_2414157_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	6.7e-13
WP_000249501.1|2414149_2414824_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.6	1.2e-52
WP_000761401.1|2414959_2416015_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229907.1|2416014_2416680_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	7.2e-37
>prophage 187
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2420418	2421627	2776423		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2420418_2421627_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 188
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2433724	2434624	2776423		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524843.1|2433724_2434624_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	4.7e-15
>prophage 189
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2447430	2448312	2776423		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730049.1|2447430_2448312_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.9e-62
>prophage 190
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2456192	2456828	2776423		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285454.1|2456192_2456828_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	4.2e-10
>prophage 191
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2470577	2475085	2776423		Staphylococcus_phage(50.0%)	4	NA	NA
WP_160199848.1|2470577_2471216_+	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000684154.1|2472052_2473177_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	1.6e-12
WP_000417008.1|2473268_2474222_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000733941.1|2474584_2475085_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 192
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2479005	2479815	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717388.1|2479005_2479815_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 193
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2498792	2499398	2776423		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2498792_2499398_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 194
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2511604	2514772	2776423		Leptospira_phage(100.0%)	1	NA	NA
WP_000592293.1|2511604_2514772_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 195
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2538470	2540137	2776423		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389669.1|2538470_2539280_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	29.5	4.3e-20
WP_000027572.1|2539276_2540137_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.1e-10
>prophage 196
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2543178	2548024	2776423		Mycobacterium_phage(50.0%)	4	NA	NA
WP_000204279.1|2543178_2544615_+	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	3.5e-57
WP_000655242.1|2545706_2545889_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622005.1|2545870_2546071_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000130128.1|2546359_2548024_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	26.1	3.6e-45
>prophage 197
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2553579	2554434	2776423		Clostridium_phage(100.0%)	1	NA	NA
WP_001044440.1|2553579_2554434_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	39.7	2.2e-06
>prophage 198
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2557946	2559903	2776423		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001015496.1|2557946_2558795_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
WP_001622009.1|2559013_2559235_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001622010.1|2559162_2559903_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	2.3e-15
>prophage 199
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2566225	2567638	2776423		Pandoravirus(100.0%)	1	NA	NA
WP_000169213.1|2566225_2567638_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 200
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2573440	2575003	2776423		Vibrio_phage(100.0%)	1	NA	NA
WP_000792328.1|2573440_2575003_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.2	1.2e-18
>prophage 201
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2585208	2586177	2776423		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2585208_2586177_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 202
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2602004	2602913	2776423		Klosneuvirus(100.0%)	1	NA	NA
WP_000162593.1|2602004_2602913_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.3	1.2e-26
>prophage 203
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2606509	2613829	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160199832.1|2606509_2613829_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	25.4	1.4e-21
>prophage 204
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2620101	2622922	2776423		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2620101_2621907_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908197.1|2622139_2622922_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.5	1.7e-08
>prophage 205
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2632533	2636368	2776423		Clostridium_phage(50.0%)	3	NA	NA
WP_000070865.1|2632533_2632977_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2633097_2633808_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_160199834.1|2635066_2636368_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.7	1.4e-132
>prophage 206
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2644306	2645917	2776423		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159966.1|2644306_2645917_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.1e-146
>prophage 207
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2653721	2661474	2776423		Bacillus_virus(25.0%)	9	NA	NA
WP_000273353.1|2653721_2654321_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	4.8e-32
WP_000460243.1|2654321_2655398_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_029549343.1|2655384_2656221_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_072492072.1|2656253_2657351_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	6.1e-41
WP_000697337.1|2657347_2657767_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654179.1|2657873_2658398_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2658424_2659663_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2659690_2660320_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723406.1|2660343_2661474_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.4e-27
>prophage 208
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2671907	2672303	2776423		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160199836.1|2671907_2672303_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	2.7e-15
>prophage 209
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2678212	2678860	2776423		Moumouvirus(100.0%)	1	NA	NA
WP_001187625.1|2678212_2678860_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.5	9.5e-10
>prophage 210
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2686060	2687581	2776423		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178935.1|2686060_2687581_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 211
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2693255	2695283	2776423		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546588.1|2693255_2695283_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.1	1.5e-24
>prophage 212
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2700432	2703816	2776423		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2700432_2700795_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_160199840.1|2701143_2702145_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2702263_2702590_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190825.1|2702591_2703071_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041107.1|2703045_2703816_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 213
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2718798	2723522	2776423		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_072691924.1|2718798_2720328_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2720357_2721377_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2721498_2721753_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047819.1|2721752_2723522_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	7.0e-63
>prophage 214
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2727287	2741352	2776423	tRNA	Moraxella_phage(16.67%)	13	NA	NA
WP_000159047.1|2727287_2728313_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
WP_000106320.1|2728626_2730237_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.6	3.3e-19
WP_072468947.1|2730328_2730442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602061.1|2730601_2732530_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.2	7.1e-53
WP_160199842.1|2732782_2733418_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_073394851.1|2733772_2734801_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|2734860_2735085_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052281.1|2735293_2736544_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	3.4e-40
WP_029549347.1|2736727_2737678_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141419.1|2737826_2739311_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	4.0e-19
WP_001253295.1|2739307_2740267_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_031785433.1|2740456_2740564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000688492.1|2740635_2741352_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 215
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2745434	2746564	2776423	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_098686295.1|2745434_2746564_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.3	5.2e-80
>prophage 216
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2749628	2751605	2776423		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2749628_2749913_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2749988_2751605_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 217
NZ_CP047785	Staphylococcus aureus strain UP_1186 chromosome, complete genome	2776423	2755492	2775952	2776423	integrase	Staphylococcus_phage(97.22%)	37	2749876:2749891	2761145:2761160
2749876:2749891	attL	TTTTAAATGAAGAAGA	NA	NA	NA	NA
WP_000791399.1|2755492_2756548_+	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	6.0e-38
WP_000595616.1|2756569_2757589_+	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.8	2.6e-54
WP_000857191.1|2758726_2759764_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000825947.1|2759822_2760287_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|2760386_2760569_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2760772_2761114_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2761119_2762052_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
2761145:2761160	attR	TCTTCTTCATTTAAAA	NA	NA	NA	NA
WP_001031454.1|2762067_2762781_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2762743_2762917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001025404.1|2763190_2763406_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128907.1|2763394_2763724_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001148605.1|2763774_2764527_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|2764542_2764740_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762519.1|2764726_2765107_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	99.2	3.4e-68
WP_001120201.1|2765161_2765485_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2765481_2765643_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2765737_2766040_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2766044_2766305_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2766313_2766577_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|2766585_2768529_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138475.1|2768530_2769451_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_073394849.1|2769531_2770149_+	MBL fold metallo-hydrolase	NA	A0A2I6PDI9	Staphylococcus_phage	100.0	9.1e-87
WP_000610648.1|2770149_2770620_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	98.7	1.3e-80
WP_160199843.1|2770649_2771543_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	98.7	3.5e-140
WP_000338530.1|2771549_2771768_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|2771776_2772181_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|2772193_2772562_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|2772565_2772808_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065097.1|2772822_2773077_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_001066447.1|2773226_2773763_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2773799_2774045_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2774041_2774248_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2774244_2774631_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2774627_2774777_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001622114.1|2774776_2774977_+	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	98.5	4.0e-28
WP_000590122.1|2775004_2775421_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2775652_2775952_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
