The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	712997	720817	2709643		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|712997_714053_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|714052_714739_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|714713_715187_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093561.1|715528_715969_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|716248_716833_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|716931_717645_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|717648_718068_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|718069_718738_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604515.1|719088_719682_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	1.2e-38
WP_001217794.1|719665_720817_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	3.5e-23
>prophage 2
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	732788	747463	2709643		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663026.1|732788_733847_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000197275.1|734197_734740_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429006.1|735419_736337_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_031835073.1|736427_736529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|736606_738112_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|738452_738953_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|738972_739839_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|740639_741038_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|741000_743106_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|743223_744195_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|744596_744752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|744790_745762_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_042909103.1|745748_746705_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|746701_747463_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	990851	999324	2709643		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|990851_991334_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010406.1|991320_992445_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|992448_993153_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|993152_993416_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|993417_994089_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032727.1|994081_996271_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|996249_997734_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_042909150.1|997726_998755_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	42.0	1.2e-62
WP_000238664.1|998757_999324_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	1570671	1578983	2709643	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1570671_1571457_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924220.1|1571582_1572473_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001062183.1|1572482_1573829_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.8e-55
WP_000683933.1|1573942_1575043_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1575045_1575723_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1575853_1576960_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_160188382.1|1577183_1578983_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
>prophage 5
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	1646837	1655880	2709643	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1646837_1647356_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1647377_1649651_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749789.1|1649853_1652133_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1652407_1652668_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1652686_1653826_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1653848_1654874_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005769.1|1654875_1655880_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	1780396	1851387	2709643	tRNA,protease	Staphylococcus_phage(95.92%)	69	NA	NA
WP_001641584.1|1780396_1786957_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.1	1.3e-300
WP_000836465.1|1787282_1787594_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108730.1|1787615_1790030_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025061.1|1790320_1791502_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1791611_1792565_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1792561_1793125_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1793244_1793646_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1794217_1795045_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1795047_1795167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196360.1|1795278_1796280_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	7.7e-184
WP_001008551.1|1796401_1796866_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001175484.1|1796878_1798060_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	1.5e-226
WP_000493886.1|1798070_1798703_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000384181.1|1798709_1799741_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261679.1|1800233_1801736_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1802258_1802573_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1802572_1803865_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163236.1|1803882_1804278_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_001032833.1|1804572_1805427_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1805702_1805927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671057.1|1806125_1806596_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_001153745.1|1806708_1807152_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1807138_1807582_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168904.1|1807877_1808513_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1808952_1809666_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1809925_1810228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1810483_1810849_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1810845_1811199_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453317.1|1813296_1814130_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.6	3.5e-158
WP_000366155.1|1814341_1815250_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.0	1.7e-137
WP_000933822.1|1815374_1816568_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1816939_1818532_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_001834463.1|1818909_1819656_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000672015.1|1819660_1820134_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	99.4	5.5e-84
WP_000718107.1|1820199_1820457_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778538.1|1820453_1821455_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.0	9.0e-185
WP_000348365.1|1821459_1822938_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_072414246.1|1823096_1823552_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	1.5e-78
WP_001795535.1|1823854_1824505_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070655.1|1824585_1825581_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	98.8	6.2e-77
WP_000669027.1|1825656_1826283_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	93.8	5.3e-90
WP_000627537.1|1826323_1826665_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	95.6	3.0e-55
WP_000414214.1|1826765_1827338_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.1e-25
WP_000864136.1|1827535_1828093_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	96.8	3.7e-79
WP_000375476.1|1828463_1828640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000731412.1|1829747_1830191_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000731418.1|1830190_1830634_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000745473.1|1830633_1831077_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_160188387.1|1831615_1834039_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_072414244.1|1834162_1834522_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000759947.1|1834745_1835186_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000926706.1|1835230_1836844_+	lipase	NA	NA	NA	NA	NA
WP_000095395.1|1836858_1837158_+	secretion protein	NA	NA	NA	NA	NA
WP_000072556.1|1837284_1838520_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	37.2	6.4e-47
WP_000028658.1|1838512_1840069_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	3.4e-287
WP_031835054.1|1840232_1840367_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038693.1|1840433_1841153_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.2	1.2e-130
WP_001038760.1|1841303_1842020_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.6	3.2e-131
WP_103150108.1|1842121_1842229_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038723.1|1842177_1842897_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.9	4.3e-128
WP_001038866.1|1843017_1843737_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_001039455.1|1843794_1844517_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_025174851.1|1844641_1845349_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.7	2.4e-123
WP_001092783.1|1846312_1846882_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.6	2.6e-51
WP_025174387.1|1847353_1847572_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	9.2e-26
WP_000550254.1|1847827_1848301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543848.1|1848305_1849097_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1849466_1850450_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|1850451_1851387_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
>prophage 7
NZ_CP047815	Staphylococcus aureus strain UP_1484 chromosome, complete genome	2709643	1978039	1983718	2709643		Staphylococcus_phage(100.0%)	6	NA	NA
WP_000669789.1|1978039_1978219_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1978529_1978790_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702262.1|1978842_1979193_-	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_000727643.1|1979875_1980325_+	chemotaxis-inhibiting protein CHIPS	NA	A7TWR9	Staphylococcus_phage	100.0	1.5e-78
WP_000595392.1|1981624_1982641_-	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
WP_000791411.1|1982662_1983718_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
