bac_id	bac_def	spacer_id	hit_contig_id	hit_contig_def	identity	alignment_length	mismatch	gapopen	query_start	query_end	hit_start	hit_end	crispr_array_of_hit_genome	evalue	bitscore	coverage	spacer_sequence	hit_contig_region	hit_contig_sequence	hmm_mismatch
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	1.1|175918|30|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	93.333	30	2	0	1	30	1060693	1060664	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.82e-06	42.8	1.0	CTTGTAGAATTTCTTGTTGAAATTCTCTGT	1060664-1060693	ACAGAGAATTTCGAAAAGAAATTCTACAAG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	2.1|1080994|26|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	92.308	26	2	0	1	26	1211484	1211459	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.18e-04	36.5	1.0	CCACCAGCTTCTGTGTTGGGGCCCCG	1211459-1211484	CGGGGCCCCAACATAGAAGCTGGCGG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	2.1|1080994|26|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	92.308	26	2	0	1	26	1775607	1775632	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.18e-04	36.5	1.0	CCACCAGCTTCTGTGTTGGGGCCCCG	1775607-1775632	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	2.1|1080994|26|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	92.308	26	2	0	1	26	2444138	2444163	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.18e-04	36.5	1.0	CCACCAGCTTCTGTGTTGGGGCCCCG	2444138-2444163	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	2.1|1080994|26|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	92.308	26	2	0	1	26	2444194	2444219	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.18e-04	36.5	1.0	CCACCAGCTTCTGTGTTGGGGCCCCG	2444194-2444219	CCGCCAGCTTCTATGTTGGGGCCCCG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.1|1264006|32|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	93.750	32	2	0	1	32	967844	967813	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	2.42e-07	46.0	1.0	TTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	967813-967844	AAGAGAATTTCGAAAAGAAATTCTACAGGCAA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.1|1264006|32|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	93.750	32	2	0	1	32	967902	967871	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	2.42e-07	46.0	1.0	TTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	967871-967902	AAGAGAATTTCGAAAAGAAATTCTACAGGCAA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.1|1264006|32|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	93.750	32	2	0	1	32	967960	967929	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	2.42e-07	46.0	1.0	TTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	967929-967960	AAGAGAATTTCGAAAAGAAATTCTACAGGCAA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.1|1264006|32|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	93.750	32	2	0	1	32	2489609	2489578	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	2.42e-07	46.0	1.0	TTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	2489578-2489609	AAGAGAATTTCGAAAAGAAATTCTACAGGCAA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.2|1264063|33|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	96.970	33	1	0	1	33	941534	941502	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.05e-08	50.7	1.0	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTT	941502-941534	AAGAAGCTGACGAAAAGTCAGCTTACGATAATG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.2|1264063|33|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	96.970	33	1	0	1	33	941593	941561	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.05e-08	50.7	1.0	CATTATTGTAAGCTGACTTTTCGTCAGCTTCTT	941561-941593	AAGAAGCTGACGAAAAGTCAGCTTACGATAATG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.3|1264002|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.444	36	2	0	1	36	967848	967813	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.48e-09	52.3	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	967813-967848	AAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.3|1264002|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.444	36	2	0	1	36	967906	967871	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.48e-09	52.3	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	967871-967906	AAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.3|1264002|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.444	36	2	0	1	36	967964	967929	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.48e-09	52.3	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	967929-967964	AAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.3|1264002|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.444	36	2	0	1	36	2489613	2489578	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.48e-09	52.3	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTT	2489578-2489613	AAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.5|1264117|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.222	36	1	0	1	36	1060700	1060665	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.98e-10	55.5	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTG	1060665-1060700	CAGAGAATTTCGAAAAGAAATTCTACAAGCAATGCA	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.5|1264117|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.444	36	2	0	1	36	1966520	1966485	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.48e-09	52.3	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTG	1966485-1966520	CAGAGAATTTCGAAAAGAAATTCTACAGGCAATGCA	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3.5|1264117|36|NZ_CP047828|CRT	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.444	36	2	0	1	36	1626935	1626970	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	4.48e-09	52.3	1.0	TGCATTGTTTGTAGAATTTCTTTTCGAAATTCTCTG	1626935-1626970	TGCATTGTCTGTAGAATTTCTTTTCGAAATCCTCTG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	5.2|2244550|37|NZ_CP047828|PILER-CR	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.297	37	1	0	1	37	2240980	2241016	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.84e-10	57.1	1.0	TTCCAAAAGTAAGCGGTCAAAATGAAGGTCAACAAAC	2240980-2241016	TTCCAAAAGTAAGCGGTCAAAACGAAGGTCAACAAAC	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	100.000	35	0	0	1	35	2478715	2478749	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.66e-10	57.1	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	2478715-2478749	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	0
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.143	35	1	0	1	35	967987	968021	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.49e-09	53.9	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	967987-968021	CAGAAGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.143	35	1	0	1	35	1172919	1172953	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.49e-09	53.9	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	1172919-1172953	CAGAAGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.143	35	1	0	1	35	2489520	2489554	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.49e-09	53.9	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	2489520-2489554	CAGAAGCTGACGAAAAGTCAGCTTACAATAATGTG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.143	35	1	0	1	35	867465	867431	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.49e-09	53.9	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	867431-867465	CACATTATTGTAAGCTGACTTTTCGTCAGCTTCTG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	97.143	35	1	0	1	35	2701122	2701088	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.49e-09	53.9	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	2701088-2701122	CACATTATTGTATGCTGACTTTTCGTCACCTTCTG	1
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.286	35	2	0	1	35	78661	78695	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.34e-08	50.7	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	78661-78695	CAGAAGCTGACGAAAAGTCAGCTTACGATAATGTG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.286	35	2	0	1	35	1217925	1217959	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.34e-08	50.7	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	1217925-1217959	CAGAAGCTGACGTAAAGTCAGCTTACAATAATGTG	2
NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7.1|2478601|35|NZ_CP047828|CRISPRCasFinder	NZ_CP047828.1	Staphylococcus aureus strain UP_1073 chromosome, complete genome	94.286	35	2	0	1	35	1081062	1081028	175889-175976|1080964-1081049|1263981-1264173|1316735-1316836|2244470-2244603|2326182-2326275|2478576-2478660|2517226-2517358|2596815-2596903	1.34e-08	50.7	1.0	CAGAAGGTGACGAAAAGTCAGCTTACAATAATGTG	1081028-1081062	CACATTATTGTAAGCTGACTTTTCGCCAGCTTCTG	2
