assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	1	175889-175976	1	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGTTGGGGCCCGTACCCCAACGCGCATTG	29	1	1	175918-175947	NZ_CP047828.1_1060693-1060664	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|101aa|up_1|NZ_CP047828.1_174449_174752_-,NA|148aa|down_2|NZ_CP047828.1_178001_178445_+,NA|75aa|down_5|NZ_CP047828.1_179656_179881_+	NA|158aa|up_9|NZ_CP047828.1_166389_166863_+	TIGR02705, conserved_hypothetical_protein, nucleoside triphosphatase YtkD	NA|249aa|up_8|NZ_CP047828.1_166867_167614_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|531aa|up_7|NZ_CP047828.1_167993_169586_-	cd00484, PEPCK_ATP, Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis	NA|398aa|up_6|NZ_CP047828.1_169957_171151_+	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|303aa|up_5|NZ_CP047828.1_171275_172184_+	pfam08378, NERD, Nuclease-related domain	NA|278aa|up_4|NZ_CP047828.1_172395_173229_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|118aa|up_3|NZ_CP047828.1_173478_173832_-	COG0239, CrcB, Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]	NA|122aa|up_2|NZ_CP047828.1_173828_174194_-	PRK14201, PRK14201, fluoride efflux transporter CrcB	NA|101aa|up_1|NZ_CP047828.1_174449_174752_-	NA	NA|238aa|up_0|NZ_CP047828.1_175010_175724_+	PRK12376, PRK12376, putative translaldolase; Provisional	NA|207aa|down_0|NZ_CP047828.1_176282_176903_-	pfam02517, Abi, CAAX protease self-immunity	NA|212aa|down_1|NZ_CP047828.1_177069_177705_-	pfam02517, Abi, CAAX protease self-immunity	NA|148aa|down_2|NZ_CP047828.1_178001_178445_+	NA	NA|148aa|down_3|NZ_CP047828.1_178431_178875_-	pfam06338, ComK, ComK protein	NA|157aa|down_4|NZ_CP047828.1_178987_179458_-	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|75aa|down_5|NZ_CP047828.1_179656_179881_+	NA	NA|285aa|down_6|NZ_CP047828.1_180155_181010_+	COG4193, LytD, Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism]	NA|431aa|down_7|NZ_CP047828.1_181096_182389_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	csa3|105aa|down_8|NZ_CP047828.1_182388_182703_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|501aa|down_9|NZ_CP047828.1_183345_184848_+	COG4529, COG4529, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	2	1080964-1081049	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCAACTTGCACATTATTGTAAGCTGGCTTT	30	1	4	1080994-1081019|1080994-1081019|1080994-1081019|1080994-1081019	NZ_CP047828.1_1211484-1211459|NZ_CP047828.1_1775607-1775632|NZ_CP047828.1_2444138-2444163|NZ_CP047828.1_2444194-2444219	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA	NA|301aa|up_9|NZ_CP047828.1_1064400_1065303_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP047828.1_1065468_1069122_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP047828.1_1069122_1072599_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP047828.1_1072758_1073334_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP047828.1_1073349_1073874_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP047828.1_1073878_1074454_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP047828.1_1075379_1076711_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP047828.1_1077061_1078267_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP047828.1_1078256_1079636_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP047828.1_1079877_1080807_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP047828.1_1081255_1082500_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP047828.1_1082608_1083799_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP047828.1_1084106_1085234_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP047828.1_1085594_1085972_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP047828.1_1086387_1086981_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP047828.1_1087044_1087428_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP047828.1_1087558_1089964_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP047828.1_1089956_1090385_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP047828.1_1090396_1090726_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP047828.1_1090718_1092215_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	3	1263981-1264173	3,1	CRISPRCasFinder,CRT	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TGTTGGGGCCCCACCCCAACTTGCA,TGTTGGGGCCCCACCCCAACT	25,21	4	13	1264006-1264037|1264006-1264037|1264006-1264037|1264006-1264037|1264063-1264095|1264063-1264095|1264002-1264037|1264002-1264037|1264002-1264037|1264002-1264037|1264117-1264152|1264117-1264152|1264117-1264152	NZ_CP047828.1_967844-967813|NZ_CP047828.1_967902-967871|NZ_CP047828.1_967960-967929|NZ_CP047828.1_2489609-2489578|NZ_CP047828.1_941534-941502|NZ_CP047828.1_941593-941561|NZ_CP047828.1_967848-967813|NZ_CP047828.1_967906-967871|NZ_CP047828.1_967964-967929|NZ_CP047828.1_2489613-2489578|NZ_CP047828.1_1060700-1060665|NZ_CP047828.1_1966520-1966485|NZ_CP047828.1_1626935-1626970	NA:NA	2,3	3	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|34aa|up_1|NZ_CP047828.1_1262294_1262396_-,NA|69aa|down_9|NZ_CP047828.1_1277067_1277274_-	NA|319aa|up_9|NZ_CP047828.1_1252338_1253295_-	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_8|NZ_CP047828.1_1253281_1254253_-	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|up_7|NZ_CP047828.1_1254627_1255599_-	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|702aa|up_6|NZ_CP047828.1_1255716_1257822_-	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|133aa|up_5|NZ_CP047828.1_1257784_1258183_-	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|289aa|up_4|NZ_CP047828.1_1258984_1259851_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|167aa|up_3|NZ_CP047828.1_1259870_1260371_+	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|502aa|up_2|NZ_CP047828.1_1260711_1262217_+	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|34aa|up_1|NZ_CP047828.1_1262294_1262396_-	NA	NA|306aa|up_0|NZ_CP047828.1_1262486_1263404_+	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|183aa|down_0|NZ_CP047828.1_1264206_1264755_-	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|353aa|down_1|NZ_CP047828.1_1264912_1265971_-	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|505aa|down_2|NZ_CP047828.1_1266210_1267725_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|326aa|down_3|NZ_CP047828.1_1267717_1268695_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|594aa|down_4|NZ_CP047828.1_1268915_1270697_-	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|628aa|down_5|NZ_CP047828.1_1270708_1272592_-	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|647aa|down_6|NZ_CP047828.1_1272862_1274803_-	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|335aa|down_7|NZ_CP047828.1_1275276_1276281_-	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|237aa|down_8|NZ_CP047828.1_1276264_1276975_-	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|69aa|down_9|NZ_CP047828.1_1277067_1277274_-	NA
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	4	1316735-1316836	4	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCCCTTTTAATTTATTAATTAGGGGTTCTTATG	33	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|100aa|up_5|NZ_CP047828.1_1312759_1313059_-,NA|230aa|up_2|NZ_CP047828.1_1314223_1314913_+,NA|39aa|down_2|NZ_CP047828.1_1318780_1318897_-	NA|228aa|up_9|NZ_CP047828.1_1310330_1311014_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|up_8|NZ_CP047828.1_1311016_1311475_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|NZ_CP047828.1_1311476_1312043_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|NZ_CP047828.1_1312137_1312680_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|NZ_CP047828.1_1312759_1313059_-	NA	NA|130aa|up_4|NZ_CP047828.1_1313196_1313586_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|148aa|up_3|NZ_CP047828.1_1313652_1314096_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|NZ_CP047828.1_1314223_1314913_+	NA	NA|163aa|up_1|NZ_CP047828.1_1315011_1315500_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|NZ_CP047828.1_1315496_1316717_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|NZ_CP047828.1_1317009_1317876_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_CP047828.1_1317991_1318636_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|NZ_CP047828.1_1318780_1318897_-	NA	NA|158aa|down_3|NZ_CP047828.1_1318988_1319462_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|NZ_CP047828.1_1319461_1320178_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|NZ_CP047828.1_1320367_1320727_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|NZ_CP047828.1_1320872_1323023_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|NZ_CP047828.1_1323719_1324364_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|NZ_CP047828.1_1324724_1325522_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|NZ_CP047828.1_1326107_1327115_-	pfam01384, PHO4, Phosphate transporter family
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	5	2244470-2244603	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA	17	1	1	2244550-2244586	NZ_CP047828.1_2240980-2241016	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|103aa|down_1|NZ_CP047828.1_2246236_2246545_-,NA|89aa|down_2|NZ_CP047828.1_2246684_2246951_-,NA|109aa|down_7|NZ_CP047828.1_2256730_2257057_+,NA|96aa|down_8|NZ_CP047828.1_2257059_2257347_+	NA|204aa|up_9|NZ_CP047828.1_2226367_2226979_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047828.1_2227525_2228803_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047828.1_2229714_2231538_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047828.1_2231676_2232093_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047828.1_2232323_2233016_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP047828.1_2233180_2233945_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047828.1_2234098_2234779_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047828.1_2234802_2236356_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047828.1_2236472_2237831_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1054aa|up_0|NZ_CP047828.1_2238299_2241461_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047828.1_2245243_2246110_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047828.1_2246236_2246545_-	NA	NA|89aa|down_2|NZ_CP047828.1_2246684_2246951_-	NA	NA|603aa|down_3|NZ_CP047828.1_2247234_2249043_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047828.1_2249174_2249567_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047828.1_2249568_2252430_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|258aa|down_6|NZ_CP047828.1_2253604_2254378_+	pfam04507, DUF576, Csa1 family	NA|109aa|down_7|NZ_CP047828.1_2256730_2257057_+	NA	NA|96aa|down_8|NZ_CP047828.1_2257059_2257347_+	NA	NA|262aa|down_9|NZ_CP047828.1_2257882_2258668_+	pfam04507, DUF576, Csa1 family
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	6	2326182-2326275	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTTTCTAACAAATAAATTTGAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047828.1_2325882_2325987_+,NA|35aa|down_2|NZ_CP047828.1_2328448_2328553_-	NA|453aa|up_9|NZ_CP047828.1_2315840_2317199_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047828.1_2317200_2318208_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047828.1_2318185_2319301_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047828.1_2319311_2320004_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047828.1_2320014_2320482_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047828.1_2320540_2321518_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047828.1_2321519_2322467_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047828.1_2323009_2323939_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047828.1_2324474_2325788_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047828.1_2325882_2325987_+	NA	NA|289aa|down_0|NZ_CP047828.1_2326415_2327282_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047828.1_2327608_2328295_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047828.1_2328448_2328553_-	NA	NA|480aa|down_3|NZ_CP047828.1_2328726_2330166_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047828.1_2330286_2331066_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047828.1_2331046_2331766_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047828.1_2331762_2332494_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047828.1_2332590_2333841_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047828.1_2334095_2334458_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047828.1_2334476_2335076_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	7	2478576-2478660	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAGTTGGGGAACGGGGCCCCAACA	25	1	9	2478601-2478635|2478601-2478635|2478601-2478635|2478601-2478635|2478601-2478635|2478601-2478635|2478601-2478635|2478601-2478635|2478601-2478635	NZ_CP047828.1_2478715-2478749|NZ_CP047828.1_967987-968021|NZ_CP047828.1_1172919-1172953|NZ_CP047828.1_2489520-2489554|NZ_CP047828.1_867465-867431|NZ_CP047828.1_2701122-2701088|NZ_CP047828.1_78661-78695|NZ_CP047828.1_1217925-1217959|NZ_CP047828.1_1081062-1081028	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP047828.1_2478834_2479005_-,NA|84aa|down_5|NZ_CP047828.1_2482144_2482396_-,NA|106aa|down_8|NZ_CP047828.1_2487517_2487835_-,NA|55aa|down_9|NZ_CP047828.1_2488079_2488244_-	NA|202aa|up_9|NZ_CP047828.1_2471415_2472021_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047828.1_2472188_2473193_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047828.1_2473222_2473729_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047828.1_2473730_2474225_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047828.1_2474287_2475547_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047828.1_2475543_2476029_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047828.1_2476042_2476489_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047828.1_2476494_2476728_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047828.1_2476734_2477334_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047828.1_2477353_2478376_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047828.1_2478834_2479005_-	NA	NA|117aa|down_1|NZ_CP047828.1_2479130_2479481_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047828.1_2479582_2480794_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047828.1_2480786_2481227_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047828.1_2481388_2482153_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047828.1_2482144_2482396_-	NA	NA|422aa|down_6|NZ_CP047828.1_2482784_2484050_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047828.1_2484166_2487334_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047828.1_2487517_2487835_-	NA	NA|55aa|down_9|NZ_CP047828.1_2488079_2488244_-	NA
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	8	2517226-2517358	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_0|NZ_CP047828.1_2518257_2518440_+,NA|67aa|down_1|NZ_CP047828.1_2518421_2518622_-,NA|93aa|down_7|NZ_CP047828.1_2524977_2525256_-	NA|130aa|up_9|NZ_CP047828.1_2508701_2509091_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|315aa|up_8|NZ_CP047828.1_2509165_2510110_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_7|NZ_CP047828.1_2510126_2510495_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|270aa|up_6|NZ_CP047828.1_2511032_2511842_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047828.1_2511838_2512699_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047828.1_2512688_2513495_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|268aa|up_3|NZ_CP047828.1_2513499_2514303_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047828.1_2514542_2514980_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047828.1_2514993_2515392_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047828.1_2515740_2517177_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|61aa|down_0|NZ_CP047828.1_2518257_2518440_+	NA	NA|67aa|down_1|NZ_CP047828.1_2518421_2518622_-	NA	NA|555aa|down_2|NZ_CP047828.1_2518910_2520575_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047828.1_2520611_2521316_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047828.1_2521691_2522117_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047828.1_2522410_2523226_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|506aa|down_6|NZ_CP047828.1_2523450_2524968_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|93aa|down_7|NZ_CP047828.1_2524977_2525256_-	NA	NA|285aa|down_8|NZ_CP047828.1_2526130_2526985_+	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|807aa|down_9|NZ_CP047828.1_2527183_2529604_-	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family
GCF_009912375.1_ASM991237v1	NZ_CP047828	Staphylococcus aureus strain UP_1073 chromosome, complete genome	9	2596815-2596903	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_0|NZ_CP047828.1_2596602_2596695_-,NA|364aa|down_0|NZ_CP047828.1_2596916_2598008_-,NA|77aa|down_5|NZ_CP047828.1_2601794_2602025_+	NA|452aa|up_9|NZ_CP047828.1_2577419_2578775_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|2460aa|up_8|NZ_CP047828.1_2579058_2586438_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_7|NZ_CP047828.1_2586760_2587867_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|NZ_CP047828.1_2587866_2588301_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|NZ_CP047828.1_2588312_2590445_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|517aa|up_4|NZ_CP047828.1_2590479_2592030_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_3|NZ_CP047828.1_2592710_2594516_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_2|NZ_CP047828.1_2594748_2595531_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_1|NZ_CP047828.1_2595598_2596456_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_0|NZ_CP047828.1_2596602_2596695_-	NA	NA|364aa|down_0|NZ_CP047828.1_2596916_2598008_-	NA	NA|326aa|down_1|NZ_CP047828.1_2598273_2599251_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047828.1_2599252_2599573_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047828.1_2599724_2600390_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047828.1_2600825_2601764_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047828.1_2601794_2602025_+	NA	NA|458aa|down_6|NZ_CP047828.1_2602698_2604072_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047828.1_2604529_2604943_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047828.1_2605142_2605586_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047828.1_2605706_2606417_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
