The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	0	62499	2744945	head,portal,holin,tail,capsid,protease,terminase	Staphylococcus_phage(80.56%)	64	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642727.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	99.6	4.0e-129
WP_000154559.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_160181579.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	98.9	6.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000565498.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000268735.1|6484_7129_+|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_000504557.1|8039_12584_+|tail	phage tail tape measure protein	tail	A0A075M036	Staphylococcus_phage	99.4	0.0e+00
WP_000567393.1|12580_14065_+|tail	phage tail protein	tail	A0A075LZV5	Staphylococcus_phage	100.0	5.3e-298
WP_145338041.1|14080_17866_+	hypothetical protein	NA	D2JLF9	Staphylococcus_phage	97.7	0.0e+00
WP_000654329.1|17855_18008_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	98.0	1.2e-19
WP_001040255.1|18054_18342_+	hypothetical protein	NA	A0A075LZJ6	Staphylococcus_phage	100.0	5.8e-44
WP_000340977.1|18397_18772_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034842.1|19183_19966_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.2	1.1e-148
WP_011447039.1|20168_20345_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20397_20505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20556_20811_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20822_21578_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|21768_22260_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_001110820.1|22949_23246_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
WP_000702263.1|23756_24107_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24159_24420_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669791.1|24730_24910_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_001823221.1|25867_27613_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_160181581.1|28241_29528_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|29727_29826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|30068_30245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|30503_30884_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991301.1|30880_31777_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645727.1|31777_32458_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763045.1|32454_33327_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|33326_34067_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|34132_34696_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|34816_35341_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|35400_35958_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713071.1|35954_36797_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001188074.1|36853_37894_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|38344_38518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|39090_39492_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181326.1|39761_40790_+	lactonase family protein	NA	NA	NA	NA	NA
WP_001021212.1|40909_42289_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001792184.1|42340_42514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|42706_43636_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|43688_44249_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275707.1|44620_45718_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.9	2.5e-47
WP_064626821.1|45921_47484_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|47494_47602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001177828.1|47673_48468_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_000897635.1|48487_49564_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284433.1|49747_51217_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000040866.1|51209_52031_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000011542.1|52301_52904_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|52884_53058_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|53348_53675_-	staphostatin A	NA	NA	NA	NA	NA
WP_000827762.1|53705_54872_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000572878.1|55732_57028_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_001165363.1|57136_57439_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272070.1|57610_58303_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_064626819.1|58299_60492_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.7e-135
WP_000774568.1|60495_62499_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
>prophage 2
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	69615	74643	2744945		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|69615_70563_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147869.1|70643_72005_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.8	1.1e-103
WP_000548775.1|72174_72705_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140176.1|72951_74022_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|74088_74643_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 3
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	78095	78509	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001670387.1|78095_78509_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	39.1	5.1e-17
>prophage 4
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	83622	84252	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|83622_84252_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 5
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	99734	101471	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|99734_101471_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 6
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	118005	170283	2744945	tRNA,protease	Staphylococcus_phage(76.47%)	50	NA	NA
WP_001144055.1|118005_118734_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001789049.1|118869_120012_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|120016_120487_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|120645_121245_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|121269_121422_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|121967_122363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116230.1|122558_123944_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669373.1|124396_125218_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437970.1|125380_126493_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045131.1|126514_127138_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|127493_127958_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992523.1|128136_129261_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|129329_129674_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|130167_130266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|130556_131753_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584624.1|131742_134679_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|134675_135617_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|135737_136700_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|136904_137462_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|138194_138560_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|138701_139124_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|139257_139998_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551840.1|139990_141214_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737978.1|141337_141841_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|142003_142114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|142103_143141_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|143198_144122_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167541.1|144145_145546_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|145868_146423_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_001253316.1|148854_149349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000848323.1|149746_150523_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617705.1|150543_150780_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000711493.1|151366_152713_-	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	50.8	9.6e-65
WP_000595637.1|152879_153476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000473597.1|155083_156019_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	3.0e-174
WP_000782446.1|156020_157004_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000543855.1|157373_158165_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000469595.1|158897_159116_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_044033807.1|159589_160162_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	62.1	3.8e-55
WP_145337971.1|161125_161833_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	95.3	6.9e-123
WP_001039455.1|161957_162680_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	1.2e-130
WP_001038866.1|162737_163457_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	3.5e-130
WP_049307651.1|163577_164294_+|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	59.2	1.1e-78
WP_103144115.1|164215_164350_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038757.1|164451_165168_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	2.4e-131
WP_001038690.1|165318_166038_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001791797.1|166102_166237_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072433081.1|166217_167957_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.0	1.3e-287
WP_000072588.1|167949_169179_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	34.8	3.3e-43
WP_001044446.1|169428_170283_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	39.7	4.9e-06
>prophage 7
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	177089	223576	2744945	tRNA,protease	Staphylococcus_phage(94.59%)	44	NA	NA
WP_000414224.1|177089_177662_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	96.6	1.9e-25
WP_000627538.1|177762_178104_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	93.8	8.1e-53
WP_000669015.1|178144_178771_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	91.8	8.4e-88
WP_000070646.1|178846_179842_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	5.8e-67
WP_001789021.1|179922_180573_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	98.6	5.2e-56
WP_012840523.1|180875_181331_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348379.1|181489_182968_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	100.0	1.5e-289
WP_000778515.1|182972_183974_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.9	6.3e-186
WP_000718107.1|183970_184228_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|184293_184767_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016169057.1|184771_185518_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000109906.1|185895_187488_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|187858_189052_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366165.1|189176_190085_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000453314.1|190297_191131_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000623478.1|191380_191734_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_001200542.1|191730_192096_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|192351_192654_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|192913_193627_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|194066_194702_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|194997_195441_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153745.1|195427_195871_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671057.1|195983_196454_-	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	8.8e-82
WP_000384171.1|196652_196877_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|197152_198007_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163236.1|198301_198697_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	99.2	3.1e-72
WP_000989121.1|198714_200007_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221179.1|200006_200321_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261670.1|200843_202346_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_072433084.1|202838_203870_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.5e-195
WP_000493886.1|203876_204509_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_001159035.1|204519_205701_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	100.0	1.7e-227
WP_001008551.1|205713_206178_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|206299_207301_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001790712.1|207412_207532_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266092.1|207534_208362_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|208935_209337_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_064626812.1|209456_210020_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	98.9	5.4e-102
WP_000526539.1|210016_210970_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|211079_212261_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108725.1|212551_214972_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.7	0.0e+00
WP_000836465.1|214993_215305_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_064626810.1|215630_222191_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	95.1	1.7e-300
WP_000285019.1|222307_223576_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	100.0	4.1e-57
>prophage 8
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	235113	240441	2744945		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|235113_235971_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|235999_236596_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118280.1|236616_240441_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 9
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	249193	250900	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862084.1|249193_250900_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 10
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	257513	260144	2744945	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186030.1|257513_258776_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.1e-85
WP_001279338.1|258869_260144_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 11
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	263914	268049	2744945		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808849.1|263914_265519_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291419.1|265505_266666_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553926.1|266779_267226_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174283.1|267305_268049_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.4	9.8e-19
>prophage 12
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	285584	288782	2744945		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226912.1|285584_288782_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	3.8e-136
>prophage 13
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	293715	295473	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|293715_295473_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 14
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	300357	308521	2744945		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|300357_301062_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_015445861.1|301061_302723_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	5.8e-35
WP_049307702.1|303221_304709_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038308.1|305002_307633_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114452.1|307648_308521_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.0e-42
>prophage 15
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	314401	325553	2744945	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808624.1|314401_315322_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.7	2.8e-31
WP_001790562.1|315414_315537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|315733_317671_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049154.1|318096_319590_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|319818_320346_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|320374_320575_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|320621_320978_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|321119_321728_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280022.1|321746_322676_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|322680_322791_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|322838_324140_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|324290_325553_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 16
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	335120	337751	2744945	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425353.1|335120_337751_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
>prophage 17
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	348083	383692	2744945	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005767.1|348083_349088_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|349089_350115_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_160181588.1|350137_351277_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	7.1e-85
WP_001160682.1|351295_351556_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|351830_354110_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595009.1|354312_356586_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	6.8e-63
WP_000364542.1|356607_357126_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058591.1|357553_359743_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|359754_360207_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|360203_361079_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|361539_362802_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|362817_364584_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|364916_365045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|365044_365818_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102729.1|365978_367253_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.4e-105
WP_000704122.1|367337_367760_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_049307776.1|367859_368042_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|368081_368228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985878.1|368464_369478_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409167.1|369789_370932_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000066097.1|370932_372051_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567030.1|372741_373410_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283315.1|373411_375889_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734080.1|376231_378862_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|378924_379185_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|379188_379617_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|379631_379940_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342266.1|380224_380863_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000137775.1|380865_381789_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|381800_383069_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|383068_383692_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 18
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	390362	391583	2744945		Lactococcus_phage(100.0%)	1	NA	NA
WP_000542320.1|390362_391583_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	2.2e-52
>prophage 19
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	400152	406316	2744945		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|400152_400614_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_072433092.1|400672_402820_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282561.1|402876_403851_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|403895_404147_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368345.1|404492_406316_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	8.0e-22
>prophage 20
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	409864	412972	2744945		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|409864_411697_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|411832_412972_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 21
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	419442	420390	2744945		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|419442_420390_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 22
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	423443	437189	2744945	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_001030080.1|423443_424835_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001794939.1|425169_425793_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|425803_426622_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217245.1|426682_428500_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.6e-54
WP_001283055.1|428723_429830_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624570.1|429960_430638_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|430640_431741_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|431854_433201_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|433210_434101_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|434226_435012_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564316.1|435053_435917_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|435903_436314_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|436589_437189_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 23
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	443362	443986	2744945		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|443362_443986_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 24
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	449530	452342	2744945		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_000019692.1|449530_450877_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.2	1.7e-61
WP_000202188.1|450869_452342_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 25
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	459842	466413	2744945		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|459842_461180_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|461172_461403_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183375.1|461380_462262_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.1	8.9e-11
WP_001124985.1|462693_463146_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942211.1|463161_464841_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|464991_466413_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 26
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	473243	474650	2744945		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|473243_474650_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 27
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	485683	487168	2744945		Cyanophage(100.0%)	1	NA	NA
WP_031924346.1|485683_487168_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	3.1e-80
>prophage 28
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	492830	502321	2744945		Brevibacillus_phage(20.0%)	9	NA	NA
WP_000447733.1|492830_493718_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183425.1|493795_494302_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273369.1|494393_495125_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	4.7e-05
WP_000368657.1|495117_495660_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159574.1|495652_496390_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|496522_497248_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987769.1|497228_498980_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_064626800.1|499224_500157_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_064626798.1|500143_502321_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	49.8	2.1e-45
>prophage 29
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	506674	509353	2744945		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|506674_506923_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163797.1|507030_507984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902119.1|507973_509353_+	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
>prophage 30
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	518763	524230	2744945		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|518763_519036_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|519466_520039_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|520041_520767_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_016169114.1|520783_521728_+	heptaprenyl diphosphate synthase component II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|521819_522269_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|522477_522678_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269931.1|523063_524230_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	2.6e-34
>prophage 31
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	527892	528468	2744945		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|527892_528468_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 32
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	531838	539344	2744945	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361556.1|531838_533041_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	2.4e-35
WP_000049918.1|533027_533999_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525081.1|534022_536716_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858789.1|537037_538330_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000362220.1|538657_539344_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
>prophage 33
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	543085	543712	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|543085_543712_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 34
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	553037	553916	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_001133022.1|553037_553916_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 35
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	592876	602259	2744945		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|592876_593581_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|593825_594020_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|594031_594283_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404645.1|594320_595445_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|595460_595898_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934894.1|596321_597278_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|597477_597957_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|597971_598811_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159902.1|598896_599430_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913315.1|599422_599851_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473652.1|599862_600363_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|600362_600584_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342146.1|600768_602259_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.3e-22
>prophage 36
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	606454	608466	2744945		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|606454_607114_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|607110_608466_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 37
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	614631	615423	2744945		Halovirus(100.0%)	1	NA	NA
WP_064626794.1|614631_615423_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 38
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	619903	624934	2744945	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|619903_621040_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|621071_621701_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|621719_621989_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|622151_622460_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|622630_622831_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876202.1|623027_623429_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|623668_624934_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 39
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	632786	634388	2744945		Klosneuvirus(100.0%)	1	NA	NA
WP_000942300.1|632786_634388_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 40
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	639477	642930	2744945		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|639477_640329_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|640335_640977_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077576.1|641115_642930_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.0	1.5e-153
>prophage 41
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	646344	647046	2744945		Tupanvirus(100.0%)	1	NA	NA
WP_000571247.1|646344_647046_+	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	28.8	1.2e-13
>prophage 42
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	654563	656918	2744945		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000154119.1|654563_655346_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	1.2e-27
WP_000173839.1|655347_656346_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.5	1.5e-33
WP_000604817.1|656351_656918_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 43
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	661237	662500	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|661237_662500_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 44
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	672159	676553	2744945		Bacillus_phage(50.0%)	2	NA	NA
WP_001289582.1|672159_674562_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.5	5.5e-95
WP_001548666.1|674561_676553_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 45
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	682490	684137	2744945		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|682490_684137_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 46
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	687806	688928	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691303.1|687806_688928_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 47
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	693078	698751	2744945		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|693078_693702_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380734.1|694081_694945_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	40.7	9.1e-16
WP_001791425.1|695018_695123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688120.1|695119_696097_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|696253_696523_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|696993_697143_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|697233_698751_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 48
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	708891	713167	2744945		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|708891_709425_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027139.1|709563_709752_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|709864_710467_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670309.1|710463_711555_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603963.1|711558_712290_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_072384901.1|712258_713167_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	3.4e-21
>prophage 49
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	717114	724910	2744945	head	Staphylococcus_phage(100.0%)	15	NA	NA
WP_000572947.1|717114_717468_-	hypothetical protein	NA	A0A1J0MF61	Staphylococcus_phage	44.4	1.1e-20
WP_000780596.1|717570_717765_-	hypothetical protein	NA	A0A1J0MG79	Staphylococcus_phage	71.4	3.7e-18
WP_001217295.1|718024_718219_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001788723.1|718229_718403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001566611.1|719470_719683_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031835011.1|719649_719778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072384902.1|719970_720810_-|head	head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	51.4	1.1e-29
WP_000956747.1|720879_721131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791646.1|721131_721305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|721259_721364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|721874_722060_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|722487_722598_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|723298_723505_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001789892.1|723798_724023_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001788714.1|724712_724910_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	2.9e-10
>prophage 50
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	729990	730467	2744945		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448085.1|729990_730467_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.6e-22
>prophage 51
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	736409	742891	2744945		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|736409_737228_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|737702_738245_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516263.1|738250_740260_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.8	2.2e-60
WP_049307606.1|740272_742891_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	1.4e-40
>prophage 52
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	752305	753349	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|752305_753349_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 53
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	757548	763092	2744945		Bacillus_virus(33.33%)	4	NA	NA
WP_064626784.1|757548_758835_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
WP_000089942.1|758834_760100_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	9.1e-41
WP_001293306.1|760130_760844_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_072384908.1|760848_763092_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 54
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	768233	780047	2744945	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|768233_769205_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282304.1|769219_770137_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|770306_770657_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|771042_773160_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|773164_773482_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|773478_773763_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097457.1|773783_774959_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_064626780.1|774979_775447_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001820550.1|775736_780047_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 55
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	784345	785116	2744945		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|784345_785116_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 56
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	789890	803561	2744945	tRNA,protease	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|789890_791294_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|791359_791905_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015597.1|791901_792798_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.5	3.6e-31
WP_000195259.1|793214_794522_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_072433106.1|794677_796753_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000593192.1|796926_797799_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672869.1|797971_799216_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041673.1|799243_800362_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110251.1|800588_801497_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020799.1|801518_802685_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176400.1|802793_803561_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	1.9e-25
>prophage 57
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	816945	819194	2744945		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|816945_817677_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|817792_818026_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167263.1|818459_819194_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 58
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	829564	831559	2744945		Moumouvirus(100.0%)	1	NA	NA
WP_049307612.1|829564_831559_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 59
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	834706	835642	2744945	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|834706_835642_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 60
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	840652	842909	2744945		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|840652_841852_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|842067_842286_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|842285_842909_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 61
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	846223	846835	2744945		Pandoravirus(100.0%)	1	NA	NA
WP_001040245.1|846223_846835_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	6.2e-27
>prophage 62
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	850802	855413	2744945		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|850802_851903_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|851904_853179_-	dihydroorotase	NA	NA	NA	NA	NA
WP_001016166.1|853196_854078_-	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_001178619.1|854105_855413_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 63
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	859877	862631	2744945	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|859877_862631_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 64
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	883734	883923	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245802.1|883734_883923_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	86.9	3.8e-20
>prophage 65
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	892894	894854	2744945		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|892894_893119_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|893075_893222_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857489.1|893894_894854_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.5	1.5e-35
>prophage 66
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	909013	913571	2744945		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|909013_909328_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_064626769.1|909500_911849_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.5	1.1e-15
WP_000161946.1|911858_913571_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
>prophage 67
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	918512	919571	2744945	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003559.1|918512_919571_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 68
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	931598	934506	2744945		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|931598_932081_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|932082_932625_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814567.1|932694_933084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|933086_933341_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757570.1|933579_934506_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	1.7e-12
>prophage 69
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	946024	947872	2744945		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|946024_947872_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 70
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	956007	964840	2744945		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|956007_957102_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|957114_957654_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455589.1|957797_958073_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|958240_959647_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863440.1|959650_960943_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|961033_962011_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|962014_963127_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668339.1|963297_963924_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957036.1|964288_964840_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 71
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	970955	975335	2744945		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|970955_971189_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040052.1|971425_973144_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|973146_973413_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|973566_974109_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685073.1|974162_975335_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	2.4e-75
>prophage 72
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	978892	993652	2744945		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921973.1|978892_980293_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273256.1|980285_981092_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101908.1|981356_982604_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709279.1|982625_984104_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.2	4.6e-76
WP_064626766.1|984103_984685_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	2.2e-29
WP_000030815.1|984687_985716_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.1	2.9e-61
WP_000483713.1|985708_987193_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032745.1|987171_989361_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	4.6e-141
WP_049307747.1|989353_990025_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|990026_990290_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|990289_990994_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010406.1|990997_992122_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|992108_992591_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000225837.1|992791_993652_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	39.2	5.3e-40
>prophage 73
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1004003	1007774	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074539.1|1004003_1007774_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 74
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1011441	1012407	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_110166321.1|1011441_1012407_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	5.9e-16
>prophage 75
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1020713	1024433	2744945		Enterococcus_phage(50.0%)	7	NA	NA
WP_001788574.1|1020713_1021004_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_072353879.1|1021067_1021199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081345.1|1021244_1022204_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1022690_1023047_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001788572.1|1023135_1023273_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_072361064.1|1023413_1023704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1023791_1024433_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
>prophage 76
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1034628	1039839	2744945	protease	Pithovirus(33.33%)	3	NA	NA
WP_072433115.1|1034628_1036953_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.1	1.4e-10
WP_000928413.1|1037171_1037975_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049951.1|1038276_1039839_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 77
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1058771	1060580	2744945		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082731.1|1058771_1060580_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
>prophage 78
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1066393	1068363	2744945		Bacillus_virus(100.0%)	2	NA	NA
WP_000427765.1|1066393_1067374_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.4	1.8e-15
WP_001067043.1|1067376_1068363_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
>prophage 79
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1072014	1074028	2744945		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786740.1|1072014_1072956_-	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.2e-05
WP_000140050.1|1072945_1074028_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 80
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1084804	1089431	2744945		Agrobacterium_phage(50.0%)	2	NA	NA
WP_000353955.1|1084804_1087414_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_160181622.1|1087616_1089431_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	8.8e-37
>prophage 81
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1096179	1099833	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_064626751.1|1096179_1099833_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.3	7.7e-24
>prophage 82
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1109987	1117094	2744945		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|1109987_1110917_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_000138487.1|1111367_1112612_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1112720_1113911_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838040.1|1114218_1115346_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1115707_1116085_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|1116500_1117094_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 83
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1127013	1130640	2744945		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009690.1|1127013_1128489_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	35.2	1.5e-47
WP_000046076.1|1128619_1129828_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143499.1|1130280_1130640_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	3.5e-14
>prophage 84
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1134683	1137352	2744945		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1134683_1135898_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129656.1|1135894_1137352_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
>prophage 85
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1150633	1154156	2744945		environmental_halophage(50.0%)	3	NA	NA
WP_000807670.1|1150633_1151875_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205572.1|1151989_1153297_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1153394_1154156_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 86
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1157643	1158669	2744945		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571218.1|1157643_1158669_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
>prophage 87
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1162210	1167386	2744945		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1162210_1162567_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001190695.1|1162710_1163031_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1163180_1163720_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150021.1|1163802_1164519_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	31.0	4.0e-17
WP_000974447.1|1164666_1165089_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_064626748.1|1165487_1165982_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255561.1|1166135_1166753_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001788423.1|1166825_1167386_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	39.9	6.5e-31
>prophage 88
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1170788	1172032	2744945		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1170788_1170989_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_001641381.1|1171345_1172032_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
>prophage 89
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1181297	1190186	2744945		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757397.1|1181297_1182026_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001057759.1|1182217_1182364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|1182379_1182703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085183.1|1184024_1184489_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050057.1|1184510_1186883_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	39.0	3.0e-93
WP_001165957.1|1186916_1187657_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|1187772_1188006_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1188072_1188531_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1188881_1190186_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 90
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1199304	1205123	2744945		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1199304_1199892_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1200465_1201410_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1201519_1202515_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1202511_1203423_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1204187_1205123_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 91
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1209568	1212415	2744945		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662681.1|1209568_1212415_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.1	0.0e+00
>prophage 92
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1215733	1216573	2744945		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000753321.1|1215733_1216573_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 93
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1222788	1228494	2744945		Streptococcus_phage(66.67%)	5	NA	NA
WP_001548033.1|1222788_1223871_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	1.3e-43
WP_000686348.1|1224234_1225101_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1225244_1225886_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258150.1|1226050_1227106_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1227423_1228494_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 94
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1237771	1261222	2744945		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1237771_1238533_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|1238529_1239486_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1239472_1240444_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1240482_1240638_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1241039_1242011_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1242128_1244234_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1244196_1244595_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1245395_1246262_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1246281_1246782_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_160181625.1|1247122_1248628_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.0	5.7e-58
WP_001790641.1|1248705_1248807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429010.1|1248897_1249815_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.4	1.3e-07
WP_000197271.1|1250494_1251037_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663037.1|1251331_1252390_-	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	27.3	1.5e-20
WP_000180991.1|1252629_1254144_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_160181627.1|1254136_1255114_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000983677.1|1255335_1257117_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525103.1|1257128_1259012_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	6.7e-56
WP_000098285.1|1259281_1261222_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 95
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1264361	1274207	2744945		Pandoravirus(12.5%)	12	NA	NA
WP_001217808.1|1264361_1265513_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.7e-23
WP_000604514.1|1265496_1266090_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1266440_1267109_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941340.1|1267110_1267530_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1267533_1268247_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|1268345_1268930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093557.1|1269209_1269650_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1269991_1270465_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1270439_1271126_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1271125_1272181_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702770.1|1272252_1273236_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.9e-62
WP_000931239.1|1273367_1274207_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.9	2.5e-55
>prophage 96
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1285819	1287193	2744945		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952045.1|1285819_1287193_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	34.1	1.7e-45
>prophage 97
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1292170	1298450	2744945		Bacillus_phage(33.33%)	6	NA	NA
WP_000857600.1|1292170_1293844_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.4	5.3e-12
WP_000737158.1|1293840_1295472_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	5.2e-12
WP_000469890.1|1295690_1296566_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1296737_1297421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148828.1|1297423_1297882_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820892.1|1297883_1298450_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
>prophage 98
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1305240	1305714	2744945		Pandoravirus(100.0%)	1	NA	NA
WP_000833486.1|1305240_1305714_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	1.6e-14
>prophage 99
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1310976	1311774	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1310976_1311774_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 100
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1316605	1317367	2744945		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1316605_1317367_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 101
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1321741	1322785	2744945		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030771.1|1321741_1322785_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 102
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1329308	1330106	2744945		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1329308_1330106_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 103
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1333331	1337290	2744945		Bacillus_phage(33.33%)	3	NA	NA
WP_000817954.1|1333331_1335059_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
WP_000793073.1|1335479_1336775_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.6	5.7e-14
WP_000832260.1|1336891_1337290_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 104
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1344224	1344968	2744945		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1344224_1344968_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 105
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1356119	1356680	2744945	integrase	Streptococcus_phage(100.0%)	1	1350273:1350287	1360276:1360290
1350273:1350287	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1356119_1356680_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1356119_1356680_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1360276:1360290	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 106
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1369576	1372930	2744945		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1369576_1370587_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001788287.1|1371085_1371607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180230.1|1371634_1372930_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	2.1e-24
>prophage 107
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1386332	1387655	2744945		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860590.1|1386332_1387655_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	47.1	1.1e-108
>prophage 108
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1398960	1399617	2744945		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455256.1|1398960_1399617_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 109
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1403258	1406579	2744945		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100838.1|1403258_1404635_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.1	8.7e-21
WP_000347061.1|1405178_1406579_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 110
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1430282	1430945	2744945		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067262.1|1430282_1430945_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 111
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1437522	1452658	2744945		Emiliania_huxleyi_virus(25.0%)	9	NA	NA
WP_000250823.1|1437522_1438710_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
WP_000887920.1|1438880_1440056_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001040568.1|1440303_1441488_-	elongation factor Tu	NA	NA	NA	NA	NA
WP_000090315.1|1441704_1443786_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1443908_1444379_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_160181632.1|1444444_1444858_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1444955_1445210_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|1445346_1448943_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1449106_1452658_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 112
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1456341	1461124	2744945	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1456341_1456890_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1456902_1457085_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1457140_1457284_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000872883.1|1457398_1457968_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664732.1|1458048_1458573_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1458572_1459319_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1459326_1459731_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631962.1|1459723_1461124_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	3.2e-55
>prophage 113
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1467135	1469592	2744945	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1467135_1469592_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 114
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1488884	1499156	2744945	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1488884_1490372_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1490424_1490517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613717.1|1490910_1491387_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1491383_1491749_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167927.1|1491726_1492530_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.3	6.7e-21
WP_000057594.1|1492745_1493678_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148605.1|1493856_1494738_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1494966_1497060_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1497316_1497856_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176713.1|1497860_1499156_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 115
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1508412	1510877	2744945		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1508412_1509378_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252522.1|1509524_1510877_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	1.4e-23
>prophage 116
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1516761	1519859	2744945	tRNA	Hokovirus(50.0%)	2	NA	NA
WP_001051134.1|1516761_1518735_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	33.0	5.0e-94
WP_000279931.1|1519019_1519859_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.1e-57
>prophage 117
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1523765	1524383	2744945		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1523765_1524383_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 118
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1533838	1535536	2744945		Streptococcus_virus(100.0%)	1	NA	NA
WP_145337958.1|1533838_1535536_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 119
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1552183	1558422	2744945		Lactobacillus_phage(33.33%)	6	NA	NA
WP_001170264.1|1552183_1553188_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
WP_000825530.1|1553519_1554362_-	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_000468003.1|1554398_1555058_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_064136642.1|1555061_1556087_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	3.7e-32
WP_001036648.1|1556381_1557524_-	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA	NA
WP_000634096.1|1557516_1558422_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	4.2e-48
>prophage 120
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1582844	1585563	2744945		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072573.1|1582844_1584014_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	46.4	4.6e-79
WP_000028661.1|1584006_1585563_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	97.9	9.8e-287
>prophage 121
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1601181	1605960	2744945		Staphylococcus_phage(33.33%)	3	NA	NA
WP_000041875.1|1601181_1601886_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	1.5e-29
WP_000424963.1|1602927_1604469_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1604493_1605960_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 122
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1614919	1616443	2744945		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930489.1|1614919_1616443_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 123
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1626105	1632437	2744945		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1626105_1626609_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1626629_1626926_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052483.1|1627169_1627361_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001218732.1|1627446_1628544_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1628555_1628759_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001077600.1|1628788_1629670_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001566903.1|1629826_1630672_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655707.1|1631333_1632437_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	29.0	4.6e-12
>prophage 124
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1642371	1643214	2744945		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209567.1|1642371_1643214_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	4.5e-12
>prophage 125
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1664523	1667258	2744945		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280802.1|1664523_1665546_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	29.7	1.1e-09
WP_001191952.1|1665523_1666468_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449067.1|1666457_1667258_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.9	6.8e-42
>prophage 126
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1685489	1686167	2744945		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911019.1|1685489_1686167_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	9.2e-32
>prophage 127
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1708115	1712555	2744945		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549279.1|1708115_1712555_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	24.3	8.2e-28
>prophage 128
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1725190	1726849	2744945		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570070.1|1725190_1725850_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736803.1|1725901_1726849_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 129
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1736193	1737630	2744945		Pandoravirus(100.0%)	1	NA	NA
WP_049307755.1|1736193_1737630_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.9	1.1e-29
>prophage 130
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1741390	1745929	2744945		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1741390_1743130_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608821.1|1743389_1744064_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975346.1|1744207_1745929_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 131
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1755498	1756542	2744945		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645606.1|1755498_1756542_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	1.6e-14
>prophage 132
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1763756	1765286	2744945		Vibrio_phage(100.0%)	1	NA	NA
WP_000838204.1|1763756_1765286_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 133
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1774160	1775666	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008401.1|1774160_1775666_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	3.5e-39
>prophage 134
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1786881	1792240	2744945		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1786881_1789131_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1789718_1790687_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127984.1|1790683_1792240_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 135
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1802450	1804510	2744945		Planktothrix_phage(50.0%)	2	NA	NA
WP_000818914.1|1802450_1803548_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166919.1|1803931_1804510_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.4	9.7e-14
>prophage 136
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1813044	1814637	2744945		Planktothrix_phage(100.0%)	1	NA	NA
WP_000067370.1|1813044_1814637_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
>prophage 137
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1830735	1831920	2744945		Klosneuvirus(100.0%)	1	NA	NA
WP_145337995.1|1830735_1831920_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.4	1.2e-34
>prophage 138
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1836754	1847038	2744945		Tupanvirus(50.0%)	3	NA	NA
WP_111228651.1|1836754_1843930_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.5	2.9e-67
WP_000826862.1|1844376_1845627_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706138.1|1846012_1847038_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
>prophage 139
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1850576	1853862	2744945		Bacillus_virus(50.0%)	4	NA	NA
WP_000590844.1|1850576_1851317_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.1	2.2e-39
WP_064626696.1|1851658_1852171_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1852349_1852553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013481.1|1852902_1853862_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 140
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1857203	1859688	2744945		Catovirus(50.0%)	2	NA	NA
WP_000723452.1|1857203_1858349_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.1	3.2e-24
WP_000779488.1|1858425_1859688_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	3.3e-22
>prophage 141
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1866705	1873270	2744945		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1866705_1867830_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028293.1|1867833_1868943_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1868955_1869984_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940781.1|1869973_1871797_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	31.3	5.2e-29
WP_000565293.1|1871816_1872581_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037328.1|1872583_1873270_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 142
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1877291	1878467	2744945		Clostridium_phage(100.0%)	1	NA	NA
WP_000469834.1|1877291_1878467_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.6	3.3e-29
>prophage 143
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1883906	1884680	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078094.1|1883906_1884680_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 144
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1892715	1893315	2744945		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1892715_1893315_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 145
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1898251	1899232	2744945		Catovirus(100.0%)	1	NA	NA
WP_001789408.1|1898251_1899232_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
>prophage 146
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1902601	1903804	2744945		Tupanvirus(100.0%)	1	NA	NA
WP_001223709.1|1902601_1903804_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 147
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1912070	1916280	2744945		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1912070_1913051_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045113.1|1913281_1914274_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924989.1|1914289_1915285_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136629.1|1915281_1916280_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.5	2.0e-14
>prophage 148
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1951189	1952257	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816132.1|1951189_1952257_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.5	3.5e-09
>prophage 149
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1958169	1974769	2744945		Bacillus_phage(28.57%)	10	NA	NA
WP_049307657.1|1958169_1960899_-	AAA family ATPase	NA	A0A2K5B264	Erysipelothrix_phage	39.8	6.5e-169
WP_000704775.1|1961241_1961721_-	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_160181640.1|1962088_1964407_-	LPXTG-anchored adenosine synthase AdsA	NA	A0A285PXS3	Cedratvirus	24.7	3.1e-10
WP_044033815.1|1964634_1965435_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.3e-37
WP_001104167.1|1965823_1966612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|1966612_1967947_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|1967939_1969766_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|1969778_1970480_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|1971806_1973090_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|1973368_1974769_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 150
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	1981462	1990493	2744945	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884334.1|1981462_1982749_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000177458.1|1983127_1984642_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.5e-90
WP_000449218.1|1984967_1985780_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819082.1|1985867_1988522_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	2.7e-119
WP_000255578.1|1988558_1990493_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 151
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2000575	2006999	2744945		Faecalibacterium_phage(25.0%)	8	NA	NA
WP_000742837.1|2000575_2001415_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491383.1|2001731_2002085_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779136.1|2002152_2002548_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054120.1|2002807_2003377_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2003494_2003695_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_000672034.1|2004087_2004279_-	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_000143653.1|2004370_2006251_-	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000154162.1|2006240_2006999_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 152
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2021261	2022974	2744945		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138653.1|2021261_2022974_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 153
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2028603	2029617	2744945		Faustovirus(100.0%)	1	NA	NA
WP_000639189.1|2028603_2029617_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	21.2	3.4e-06
>prophage 154
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2042059	2042752	2744945		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185864.1|2042059_2042752_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	1.7e-28
>prophage 155
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2068852	2070712	2744945		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125619.1|2068852_2070712_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 156
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2096484	2098235	2744945		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143419.1|2096484_2097372_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2097479_2098235_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 157
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2101655	2102153	2744945		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2101655_2102153_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 158
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2107204	2109588	2744945		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071717.1|2107204_2109055_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	1.2e-235
WP_000173328.1|2109051_2109588_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.6	1.0e-41
>prophage 159
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2115433	2125546	2744945	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066520.1|2115433_2117143_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.2	1.1e-57
WP_000011688.1|2117420_2117633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000708242.1|2117912_2118356_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001172340.1|2118549_2120148_+	acetyl-CoA synthetase	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	5.3e-78
WP_072433160.1|2120207_2120537_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2120832_2122329_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031400.1|2122521_2123412_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	7.2e-08
WP_001237629.1|2123534_2123951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_064626681.1|2124208_2125546_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	1.0e-18
>prophage 160
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2153201	2156990	2744945		Staphylococcus_phage(50.0%)	3	NA	NA
WP_000751269.1|2153201_2153903_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	6.8e-38
WP_000996738.1|2154178_2154667_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379821.1|2155178_2156990_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 161
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2165431	2169414	2744945		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_000161366.1|2165431_2166430_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
WP_000076661.1|2166519_2166726_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024147.1|2167005_2169414_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	41.0	6.4e-128
>prophage 162
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2178655	2181691	2744945	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058988.1|2178655_2180761_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455970.1|2181169_2181691_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	1.5e-26
>prophage 163
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2188120	2194490	2744945		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062652.1|2188120_2189860_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	1.3e-34
WP_000473688.1|2190160_2192227_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206033.1|2192592_2193003_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240662.1|2193044_2193389_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228171.1|2193521_2194490_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	5.2e-12
>prophage 164
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2204866	2205859	2744945		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161532.1|2204866_2205859_-	D-lactate dehydrogenase	NA	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	31.5	1.1e-36
>prophage 165
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2215141	2215837	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382901.1|2215141_2215837_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	1.5e-37
>prophage 166
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2234596	2235463	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000721337.1|2234596_2235463_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.9	3.4e-79
>prophage 167
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2245773	2250954	2744945		Streptococcus_phage(50.0%)	3	NA	NA
WP_001789229.1|2245773_2247582_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.3	1.7e-93
WP_000755944.1|2247698_2248091_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_049307688.1|2248092_2250954_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	4.0e-28
>prophage 168
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2255428	2256124	2744945		Bacillus_phage(100.0%)	1	NA	NA
WP_000217459.1|2255428_2256124_+	SDR family oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	8.6e-09
>prophage 169
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2268365	2269923	2744945		Planktothrix_phage(50.0%)	2	NA	NA
WP_160181648.1|2268365_2269181_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.3	1.8e-13
WP_000590517.1|2269173_2269923_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.8	3.1e-20
>prophage 170
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2277058	2281487	2744945		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923525.1|2277058_2277721_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	32.2	6.5e-22
WP_000072147.1|2277713_2278490_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_160181652.1|2278885_2280073_+	MFS transporter	NA	NA	NA	NA	NA
WP_000700926.1|2280134_2281487_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	33.3	2.8e-11
>prophage 171
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2285182	2287041	2744945		Mycoplasma_phage(50.0%)	2	NA	NA
WP_023914175.1|2285182_2286409_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2286405_2287041_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 172
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2304766	2311028	2744945		Bacillus_phage(66.67%)	5	NA	NA
WP_001176863.1|2304766_2305909_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779357.1|2306176_2306563_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482652.1|2306696_2306804_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064837.1|2307506_2309270_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.9	5.0e-37
WP_049307645.1|2309294_2311028_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	6.9e-31
>prophage 173
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2314489	2320260	2744945		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971552.1|2314489_2315605_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	D2TEZ5	Emiliania_huxleyi_virus	25.1	3.5e-20
WP_000286877.1|2315615_2316308_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200948.1|2316318_2316786_+	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000783435.1|2316837_2317815_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	75.9	2.7e-141
WP_000916707.1|2317816_2318764_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	78.4	2.6e-141
WP_000594519.1|2319330_2320260_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 174
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2328084	2328816	2744945		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2328084_2328816_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 175
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2345471	2347031	2744945		Escherichia_phage(100.0%)	1	NA	NA
WP_000692645.1|2345471_2347031_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 176
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2368301	2369336	2744945		Bacillus_virus(100.0%)	1	NA	NA
WP_000655972.1|2368301_2369336_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 177
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2379196	2383094	2744945		Hokovirus(33.33%)	4	NA	NA
WP_000477329.1|2379196_2380570_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	1.3e-13
WP_000249497.1|2380562_2381237_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2381373_2382429_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229911.1|2382428_2383094_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.2e-36
>prophage 178
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2386834	2391535	2744945		Salmonella_phage(50.0%)	4	NA	NA
WP_000999131.1|2386834_2388043_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
WP_000828570.1|2388271_2388823_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000738241.1|2388943_2389591_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_000213887.1|2389603_2391535_+	DHA2 family efflux MFS transporter permease subunit	NA	A0A2H4PQR6	Staphylococcus_phage	28.4	9.4e-05
>prophage 179
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2400136	2401036	2744945		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524832.1|2400136_2401036_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 180
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2413916	2414798	2744945		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730043.1|2413916_2414798_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	2.2e-62
>prophage 181
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2422676	2423312	2744945		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2422676_2423312_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 182
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2436877	2440858	2744945		Staphylococcus_phage(50.0%)	4	NA	NA
WP_011447058.1|2436877_2437516_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000684143.1|2437826_2438951_+	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	5.5e-13
WP_000417016.1|2439042_2439996_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	2.9e-31
WP_000737705.1|2440357_2440858_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 183
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2444774	2445590	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717393.1|2444774_2445590_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.5e-07
>prophage 184
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2464572	2465178	2744945		Pithovirus(100.0%)	1	NA	NA
WP_000913019.1|2464572_2465178_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 185
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2477206	2480374	2744945		Leptospira_phage(100.0%)	1	NA	NA
WP_045173679.1|2477206_2480374_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	6.2e-62
>prophage 186
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2504057	2505724	2744945		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389653.1|2504057_2504867_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.5	9.7e-20
WP_000155392.1|2504863_2505724_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	5.7e-10
>prophage 187
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2508993	2518342	2744945		Bodo_saltans_virus(50.0%)	6	NA	NA
WP_072526264.1|2508993_2513712_+	DEAD/DEAH box helicase	NA	A0A2H4UTW8	Bodo_saltans_virus	26.6	9.9e-48
WP_000451335.1|2513773_2514661_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000835378.1|2514670_2515015_+	STAS-like domain-containing protein	NA	NA	NA	NA	NA
WP_000963455.1|2515004_2515529_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_000655238.1|2516027_2516210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130142.1|2516677_2518342_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	1.1e-44
>prophage 188
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2523413	2526507	2744945		Staphylococcus_phage(50.0%)	6	NA	NA
WP_001015493.1|2523413_2524262_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	2.9e-43
WP_001789089.1|2524482_2524608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001293424.1|2524562_2524856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000273451.1|2524869_2525478_+	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001789088.1|2525550_2525730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789087.1|2525766_2526507_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.4	7.3e-14
>prophage 189
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2532827	2534240	2744945		Pandoravirus(100.0%)	1	NA	NA
WP_000169215.1|2532827_2534240_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.9e-48
>prophage 190
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2538208	2539771	2744945		Vibrio_phage(100.0%)	1	NA	NA
WP_000792344.1|2538208_2539771_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.8	4.2e-19
>prophage 191
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2549972	2550941	2744945		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989091.1|2549972_2550941_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.3e-15
>prophage 192
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2566950	2567859	2744945		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2566950_2567859_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 193
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2571450	2578893	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001048291.1|2571450_2578893_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	23.9	1.8e-19
>prophage 194
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2585149	2587969	2744945		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334465.1|2585149_2586955_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.0e-97
WP_000908177.1|2587186_2587969_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	1.7e-08
>prophage 195
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2600575	2604407	2744945		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2600575_2601019_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2601139_2601850_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001568284.1|2602164_2602827_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242318.1|2603105_2604407_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	2.7e-133
>prophage 196
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2612345	2613956	2744945		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2612345_2613956_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 197
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2621758	2629508	2744945		Bacillus_virus(25.0%)	9	NA	NA
WP_000273356.1|2621758_2622358_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2622358_2623435_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248734.1|2623421_2624258_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_072362259.1|2624290_2625388_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
WP_000697334.1|2625384_2625804_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654185.1|2625910_2626435_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_049307779.1|2626461_2627700_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	52.7	3.1e-102
WP_000048712.1|2627727_2628357_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2628380_2629508_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 198
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2639910	2640306	2744945		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2639910_2640306_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 199
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2646513	2647161	2744945		Moumouvirus(100.0%)	1	NA	NA
WP_001187627.1|2646513_2647161_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.5	6.1e-09
>prophage 200
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2654360	2655881	2744945		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2654360_2655881_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 201
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2661552	2663580	2744945		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546594.1|2661552_2663580_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	7.8e-26
>prophage 202
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2668730	2672114	2744945		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2668730_2669093_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_061839378.1|2669441_2670443_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2670561_2670888_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2670889_2671369_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041102.1|2671343_2672114_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
>prophage 203
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2686070	2690794	2744945		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_000094576.1|2686070_2687600_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	5.5e-08
WP_072399972.1|2687629_2688649_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2688770_2689025_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_049307628.1|2689024_2690794_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	9.1e-63
>prophage 204
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2694554	2708935	2744945	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159036.1|2694554_2695580_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	3.4e-62
WP_000106316.1|2695681_2697292_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	26.9	4.3e-19
WP_001790685.1|2697913_2698042_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049307600.1|2698186_2700115_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.2e-53
WP_001283612.1|2700367_2701003_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072384915.1|2701357_2702386_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581077.1|2702445_2702670_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052271.1|2702877_2704128_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.5	1.2e-40
WP_000790325.1|2704310_2705261_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141416.1|2705409_2706894_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.4	1.5e-18
WP_001253310.1|2706890_2707850_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688498.1|2708218_2708935_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	3.0e-25
>prophage 205
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2716114	2718091	2744945		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2716114_2716399_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240645.1|2716474_2718091_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 206
NZ_CP047826	Staphylococcus aureus strain UP_1239 chromosome, complete genome	2744945	2723938	2744475	2744945	integrase	Staphylococcus_phage(97.3%)	38	2713697:2713712	2729289:2729304
2713697:2713712	attL	TCTTTTTTAAATAAGC	NA	NA	NA	NA
WP_000791404.1|2723938_2724991_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000595401.1|2725012_2726029_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000857191.1|2727410_2728448_-|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000825947.1|2728506_2728971_-	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000705248.1|2729070_2729253_-	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000591749.1|2729456_2729798_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
2729289:2729304	attR	TCTTTTTTAAATAAGC	NA	NA	NA	NA
WP_000759682.1|2729803_2730736_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2730751_2731465_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_001801500.1|2731427_2731601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000854072.1|2731597_2731861_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2731876_2732092_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128907.1|2732080_2732410_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001148605.1|2732460_2733213_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|2733228_2733426_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762521.1|2733412_2733793_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2733847_2734171_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2734167_2734329_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2734423_2734726_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2734730_2734991_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2734999_2735263_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_160181660.1|2735271_2737215_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	99.8	0.0e+00
WP_000138475.1|2737216_2738137_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|2738217_2738835_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934760.1|2738835_2739306_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
WP_000148321.1|2739335_2740229_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.3	5.5e-141
WP_000338530.1|2740235_2740454_+	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000401960.1|2740462_2740867_+	RusA family crossover junction endodeoxyribonuclease	NA	A0EWX6	Staphylococcus_phage	100.0	1.9e-72
WP_000101288.1|2740879_2741248_+	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000131370.1|2741251_2741494_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065094.1|2741508_2741757_+	DUF1024 family protein	NA	A0A075LYF1	Staphylococcus_phage	97.6	4.1e-38
WP_001066447.1|2741749_2742286_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2742322_2742568_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195803.1|2742564_2742771_+	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000592207.1|2742767_2743154_+	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000595265.1|2743150_2743300_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000265043.1|2743299_2743500_+	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000590122.1|2743527_2743944_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988336.1|2744175_2744475_+	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
