The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	0	21140	2883314	head,tail,terminase,holin,protease,capsid,portal	Staphylococcus_phage(100.0%)	23	NA	NA
WP_000568449.1|0_1695_+|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	90.6	3.4e-301
WP_001052526.1|1708_1912_+	hypothetical protein	NA	D2JLE5	Staphylococcus_phage	75.4	4.3e-17
WP_160190091.1|1974_3171_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	87.7	6.5e-198
WP_025173991.1|3589_4174_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	95.9	3.0e-103
WP_000849953.1|4260_5496_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	79.5	1.0e-169
WP_001240639.1|5532_5691_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	88.5	3.9e-18
WP_001177664.1|5699_6032_+|head,tail	phage head-tail adapter protein	head,tail	A7TWQ4	Staphylococcus_phage	80.9	4.6e-45
WP_000671501.1|6021_6354_+|head,tail	head-tail adaptor protein	head,tail	D2JLF1	Staphylococcus_phage	83.6	3.3e-51
WP_000501001.1|6353_6731_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	86.4	6.2e-54
WP_000608369.1|6727_7108_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	81.7	8.7e-56
WP_000570645.1|7108_8062_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	95.0	6.9e-166
WP_000442604.1|8126_8573_+	hypothetical protein	NA	O80053	Staphylococcus_phage	93.9	8.7e-71
WP_000570353.1|8632_8755_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	100.0	6.9e-15
WP_160189988.1|8810_13460_+|tail	phage tail tape measure protein	tail	R9QSQ8	Staphylococcus_phage	99.5	0.0e+00
WP_001154327.1|13459_14950_+|tail	phage tail protein	tail	D2JLF8	Staphylococcus_phage	100.0	8.2e-299
WP_031783569.1|14965_18751_+	phage minor structural protein	NA	A0EX05	Staphylococcus_phage	99.8	0.0e+00
WP_001153681.1|18740_18893_+	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_001040254.1|18939_19227_+	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	98.9	4.9e-43
WP_000539688.1|19284_19581_+	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_011447039.1|19730_19907_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031790389.1|19959_20067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20118_20373_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20384_21140_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
>prophage 2
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	25811	28546	2883314		Tupanvirus(50.0%)	3	NA	NA
WP_000449073.1|25811_26612_+	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	44.4	1.5e-41
WP_001191936.1|26601_27546_+	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000280814.1|27523_28546_+	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	28.1	6.7e-10
>prophage 3
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	49955	50798	2883314		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_160189989.1|49955_50798_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.7	7.7e-12
>prophage 4
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	60719	81724	2883314	coat,terminase,integrase	Staphylococcus_phage(81.82%)	30	67330:67347	82431:82448
WP_000655687.1|60719_61823_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
WP_001573568.1|62486_63332_+	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000373076.1|63485_64367_+	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_000157348.1|64396_64600_+	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_001218732.1|64611_65709_+	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_001052483.1|65794_65986_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	4.9e-23
WP_001261460.1|66229_66526_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|66546_67050_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|67101_67344_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
67330:67347	attL	AAAGAAGAACAATAATAT	NA	NA	NA	NA
WP_000400841.1|67575_68295_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_000270135.1|68407_69622_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	97.3	3.3e-221
WP_000230361.1|69782_70406_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001611932.1|70554_70719_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_001138305.1|70719_70992_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	1.2e-43
WP_000784892.1|71003_71177_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001231376.1|71143_71347_+	hypothetical protein	NA	A0A1W6JQF4	Staphylococcus_phage	98.5	2.0e-30
WP_000403837.1|71348_71732_+	hypothetical protein	NA	A0A1W6JQI7	Staphylococcus_phage	96.1	4.8e-62
WP_001103967.1|71732_72059_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	96.3	3.5e-53
WP_001002709.1|72123_72993_+	hypothetical protein	NA	Q4ZE74	Staphylococcus_phage	96.2	5.3e-165
WP_000447468.1|73006_74716_+	DUF927 domain-containing protein	NA	Q4ZE73	Staphylococcus_phage	92.8	8.2e-303
WP_000356942.1|75025_75406_+	hypothetical protein	NA	Q4ZE71	Staphylococcus_phage	96.8	1.7e-67
WP_001019762.1|75402_76044_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	92.5	4.7e-110
WP_001288442.1|76751_77096_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	91.7	1.3e-50
WP_073409541.1|77126_77780_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.1	2.9e-115
WP_000771361.1|77832_78360_+|coat	spore coat protein	coat	Q4ZE87	Staphylococcus_phage	100.0	6.8e-91
WP_001656917.1|78491_78704_+	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	97.1	5.4e-31
WP_001293071.1|78700_79270_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801980.1|79546_80515_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_073392942.1|80656_81094_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|81211_81724_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
82431:82448	attR	AAAGAAGAACAATAATAT	NA	NA	NA	NA
>prophage 5
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	90876	92400	2883314		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930503.1|90876_92400_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.2	5.5e-40
>prophage 6
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	101500	104533	2883314		Klosneuvirus(50.0%)	2	NA	NA
WP_000264071.1|101500_102967_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424963.1|102991_104533_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
>prophage 7
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	107839	108166	2883314	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001799349.1|107839_108166_-|transposase	IS3 family transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	85.4	4.3e-11
>prophage 8
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	119596	122378	2883314		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000028598.1|119596_121153_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.5	1.7e-286
WP_000072632.1|121145_122378_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.9	2.7e-45
>prophage 9
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	145915	152152	2883314		Lactococcus_phage(33.33%)	5	NA	NA
WP_000634110.1|145915_146821_+	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.4	7.2e-48
WP_000569267.1|148246_149272_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.3	1.4e-31
WP_000467992.1|149275_149935_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000825534.1|149971_150814_+	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA	NA
WP_001170274.1|151147_152152_+	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.1	1.4e-23
>prophage 10
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	168789	170487	2883314		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109044.1|168789_170487_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 11
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	179331	179949	2883314		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|179331_179949_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 12
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	183855	186953	2883314	tRNA	Streptococcus_phage(50.0%)	2	NA	NA
WP_064284605.1|183855_184695_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	3.5e-57
WP_001051120.1|184979_186953_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SEZ7	Hokovirus	32.6	3.2e-93
>prophage 13
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	192837	195302	2883314		Tupanvirus(50.0%)	2	NA	NA
WP_001252534.1|192837_194190_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
WP_000933774.1|194336_195302_+	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
>prophage 14
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	204558	215016	2883314	tRNA	Klosneuvirus(16.67%)	10	NA	NA
WP_001176721.1|204558_205854_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.3	8.2e-13
WP_000551283.1|205858_206398_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001167888.1|206655_208749_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000148605.1|209162_210044_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_000057594.1|210222_211155_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000167936.1|211370_212174_+	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	6.7e-21
WP_001154303.1|212151_212517_+	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000613720.1|212513_212990_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_016186812.1|213383_213476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001288202.1|213528_215016_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
>prophage 15
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	234099	236556	2883314	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_001587503.1|234099_236556_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 16
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	242567	247350	2883314	tRNA	Catovirus(50.0%)	8	NA	NA
WP_000631982.1|242567_243968_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	32.0	2.5e-55
WP_000370181.1|243960_244365_+	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000390332.1|244372_245119_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000664740.1|245118_245643_+	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000872867.1|245723_246293_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_001791441.1|246407_246551_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001074473.1|246606_246789_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001288302.1|246801_247350_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
>prophage 17
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	251033	261987	2883314		uncultured_Mediterranean_phage(33.33%)	6	NA	NA
WP_160189995.1|251033_254585_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.2	2.1e-50
WP_001819727.1|254748_258345_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	4.3e-67
WP_000031892.1|258481_258736_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001142337.1|258833_259247_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_001137495.1|259312_259783_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_160189996.1|259905_261987_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.5	1.6e-66
>prophage 18
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	265014	266202	2883314		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250820.1|265014_266202_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	1.5e-45
>prophage 19
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	272790	273453	2883314		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|272790_273453_-	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 20
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	292145	295467	2883314		Burkholderia_virus(50.0%)	2	NA	NA
WP_160189998.1|292145_293546_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	4.7e-54
WP_000382588.1|294090_295467_+	AMP-binding protein	NA	A0A2H4PQM9	Staphylococcus_phage	23.9	6.7e-21
>prophage 21
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	299134	299791	2883314		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_000455258.1|299134_299791_+	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	6.4e-46
>prophage 22
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	311095	312418	2883314		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860607.1|311095_312418_-	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	8.2e-109
>prophage 23
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	319949	323303	2883314		Cafeteria_roenbergensis_virus(50.0%)	3	NA	NA
WP_000180233.1|319949_321245_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
WP_001788287.1|321272_321794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200748.1|322292_323303_+	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
>prophage 24
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	336398	336959	2883314	integrase	Streptococcus_phage(100.0%)	1	329000:329014	341640:341654
329000:329014	attL	TATTATCATTGCATT	NA	NA	NA	NA
WP_001044966.1|336398_336959_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
WP_001044966.1|336398_336959_+|integrase	tyrosine-type recombinase/integrase	integrase	Q7Y4J2	Streptococcus_phage	31.3	1.3e-18
341640:341654	attR	TATTATCATTGCATT	NA	NA	NA	NA
>prophage 25
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	349824	350568	2883314		Indivirus(100.0%)	1	NA	NA
WP_000894458.1|349824_350568_-	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-12
>prophage 26
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	357501	361460	2883314		Streptomyces_phage(33.33%)	3	NA	NA
WP_000832260.1|357501_357900_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
WP_000793055.1|358016_359312_-	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000817954.1|359732_361460_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	9.7e-110
>prophage 27
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	364687	365485	2883314		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|364687_365485_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 28
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	372007	373051	2883314		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_001030763.1|372007_373051_+	alpha/beta hydrolase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.1	3.8e-16
>prophage 29
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	377417	378179	2883314		Planktothrix_phage(100.0%)	1	NA	NA
WP_000153733.1|377417_378179_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.0	3.2e-33
>prophage 30
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	382900	383698	2883314		Lactobacillus_virus(100.0%)	1	NA	NA
WP_000731642.1|382900_383698_-	LysM peptidoglycan-binding domain-containing protein	NA	C1KFN7	Lactobacillus_virus	35.8	2.1e-06
>prophage 31
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	388951	389425	2883314		Pandoravirus(100.0%)	1	NA	NA
WP_000833480.1|388951_389425_+	cupin	NA	A0A291AU44	Pandoravirus	38.7	4.6e-14
>prophage 32
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	394729	424663	2883314	transposase,bacteriocin	Staphylococcus_phage(41.67%)	30	NA	NA
WP_001105942.1|394729_395404_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|395438_395651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|396366_396681_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153633.1|396680_397970_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.1	5.6e-187
WP_000358995.1|397987_398383_+	thioredoxin-dependent arsenate reductase	NA	A0A2H4PQT9	Staphylococcus_phage	86.3	8.5e-62
WP_000726502.1|398762_399056_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_103246187.1|399130_401065_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000831610.1|401068_401380_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593106.1|401391_402018_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
WP_000277741.1|402379_404026_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001643491.1|404180_404558_+	recombinase	NA	NA	NA	NA	NA
WP_001582045.1|404497_404824_+	recombinase	NA	NA	NA	NA	NA
WP_000273007.1|404890_405391_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000145511.1|405755_406616_+	replication initiation protein	NA	NA	NA	NA	NA
WP_000761344.1|406702_407044_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001002795.1|407258_407354_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_160190002.1|408953_409469_+	replication protein A	NA	NA	NA	NA	NA
WP_000998976.1|409465_409891_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000397995.1|411107_411431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791613.1|411659_411752_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000377738.1|412053_412875_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000838599.1|412999_413995_+	YeiH family protein	NA	NA	NA	NA	NA
WP_160190003.1|414329_414905_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.9e-41
WP_000069452.1|415171_417217_+	copper-translocating P-type ATPase CopB	NA	E4ZFI9	Streptococcus_phage	29.2	2.3e-65
WP_000277154.1|417231_418665_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000277738.1|418731_420378_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000378396.1|420740_422921_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|422913_423279_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|423516_423894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|423988_424663_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
>prophage 33
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	428194	434474	2883314		Enterococcus_phage(33.33%)	6	NA	NA
WP_000820892.1|428194_428761_-	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	6.1e-21
WP_000148821.1|428762_429221_-	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000358501.1|429223_429907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469883.1|430078_430954_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000737163.1|431172_432804_+	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	28.2	2.3e-12
WP_000857616.1|432800_434474_+	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	24.2	2.0e-11
>prophage 34
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	439451	440825	2883314		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952030.1|439451_440825_+	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	34.1	1.2e-46
>prophage 35
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	452430	462276	2883314		Staphylococcus_phage(12.5%)	12	NA	NA
WP_000931237.1|452430_453270_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	42.3	5.1e-56
WP_000702776.1|453401_454385_+	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.0	7.3e-62
WP_000244416.1|454456_455512_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|455511_456198_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|456172_456646_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093552.1|456987_457428_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637686.1|457707_458292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062968.1|458390_459104_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|459107_459527_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|459528_460197_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604508.1|460547_461141_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	44.0	6.8e-39
WP_001217804.1|461124_462276_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 36
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	465415	488386	2883314		uncultured_Caudovirales_phage(35.71%)	18	NA	NA
WP_000098285.1|465415_467356_+	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
WP_000525101.1|467627_469511_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	8.8e-56
WP_000983677.1|469522_471304_+	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000589241.1|471524_472502_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.8	1.1e-25
WP_000180987.1|472494_474009_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000663016.1|474248_475307_+	histidinol-phosphate transaminase	NA	A0A0H3TLT9	Faustovirus	26.5	5.7e-20
WP_000197262.1|475465_476008_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429002.1|476559_477477_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	8.2e-07
WP_031788440.1|477567_477669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193750.1|477746_479252_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930016.1|479591_480092_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	66.2	2.7e-52
WP_001068491.1|480111_480978_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|481779_482178_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|482140_484246_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|484365_485337_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000876311.1|485713_486685_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	80.2	7.8e-141
WP_001245566.1|486671_487628_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	60.0	5.5e-06
WP_000616865.1|487624_488386_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	30.1	7.2e-17
>prophage 37
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	497663	503368	2883314		Streptococcus_phage(66.67%)	5	NA	NA
WP_000460983.1|497663_498734_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
WP_000258151.1|499051_500107_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000192947.1|500270_500912_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	48.3	4.0e-37
WP_000686342.1|501055_501922_+	DegV family protein	NA	NA	NA	NA	NA
WP_000370984.1|502285_503368_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.8	1.2e-44
>prophage 38
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	509806	512334	2883314	transposase	uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_000749385.1|509806_510646_+	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
WP_000277741.1|510687_512334_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 39
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	515873	518720	2883314		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662687.1|515873_518720_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 40
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	523117	528933	2883314		Streptococcus_phage(40.0%)	5	NA	NA
WP_000134960.1|523117_524053_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	8.4e-84
WP_000369719.1|524820_525732_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_001248939.1|525728_526724_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000006551.1|526832_527777_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001049165.1|528345_528933_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
>prophage 41
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	539621	548378	2883314		Staphylococcus_phage(50.0%)	8	NA	NA
WP_001121760.1|539621_540926_+	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
WP_000785248.1|541262_541721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000556760.1|541787_542021_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_001165967.1|542149_542890_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_160190004.1|542923_545296_+	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	8.7e-93
WP_001085185.1|545317_545782_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	100.0	1.5e-81
WP_000999096.1|546747_547362_+	stage II sporulation protein M	NA	NA	NA	NA	NA
WP_001574560.1|547649_548378_-	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	36.8	4.8e-18
>prophage 42
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	557762	559006	2883314		Bacillus_phage(50.0%)	2	NA	NA
WP_001574556.1|557762_558449_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	3.8e-33
WP_001059082.1|558805_559006_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
>prophage 43
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	562411	571271	2883314		Streptococcus_phage(40.0%)	13	NA	NA
WP_016187137.1|562411_562972_+	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.9	3.8e-31
WP_000255545.1|563044_563662_-	amino acid transporter	NA	NA	NA	NA	NA
WP_000569884.1|563817_564312_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000974455.1|564710_565133_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000150036.1|565280_565997_+	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	29.7	6.8e-17
WP_000422908.1|566079_566619_+	nitroreductase	NA	NA	NA	NA	NA
WP_160190006.1|566768_567089_-	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	4.1e-06
WP_000589549.1|567232_567589_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_000290491.1|567746_568127_+	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_160190086.1|568304_569111_+	DUF1963 domain-containing protein	NA	NA	NA	NA	NA
WP_001018965.1|569320_569707_+	topiosmerase	NA	NA	NA	NA	NA
WP_001065804.1|569699_569996_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000571209.1|570245_571271_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	7.2e-28
>prophage 44
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	575219	578742	2883314		Indivirus(50.0%)	3	NA	NA
WP_000168845.1|575219_575981_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
WP_000205572.1|576078_577386_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000807671.1|577500_578742_+	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.1e-110
>prophage 45
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	591953	594622	2883314		Tupanvirus(50.0%)	2	NA	NA
WP_000129645.1|591953_593411_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.3	4.4e-39
WP_000613541.1|593407_594622_+	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
>prophage 46
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	598665	602293	2883314		Lake_Baikal_phage(50.0%)	3	NA	NA
WP_001143497.1|598665_599025_+	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.1e-14
WP_000046076.1|599478_600687_+	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001009683.1|600817_602293_+	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	1.2e-47
>prophage 47
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	612227	619277	2883314		Aureococcus_anophage(33.33%)	6	NA	NA
WP_000035058.1|612227_612821_+	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
WP_001067294.1|613235_613613_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000838047.1|613974_615102_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_000167321.1|615409_616600_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	30.0	1.3e-33
WP_000138487.1|616708_617953_+	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000185311.1|618347_619277_-	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.5	1.8e-38
>prophage 48
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	629432	636892	2883314	transposase	Bacillus_phage(50.0%)	4	NA	NA
WP_000154949.1|629432_633086_+	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.3	7.7e-24
WP_000670753.1|633251_634154_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA	NA
WP_000902813.1|634479_634869_+	YisL family protein	NA	NA	NA	NA	NA
WP_045178729.1|635245_636892_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	99.3	2.4e-291
>prophage 49
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	640157	644784	2883314		Pseudomonas_phage(50.0%)	2	NA	NA
WP_001044234.1|640157_641972_+	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	8.8e-37
WP_160190008.1|642174_644784_+	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	7.2e-117
>prophage 50
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	655505	708486	2883314	protease,transposase,tRNA,holin	Bacillus_virus(18.18%)	48	NA	NA
WP_000140043.1|655505_656588_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.4e-18
WP_000786746.1|656577_657519_+	ABC transporter ATP-binding protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	9.3e-06
WP_160190010.1|657537_659193_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000517177.1|659404_659671_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000121211.1|659662_660610_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_073392975.1|660724_662194_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067041.1|662244_663231_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.0	1.8e-15
WP_000427776.1|663233_664214_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_001574526.1|664206_664857_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180271.1|664868_665750_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_094409958.1|665838_667406_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_001794171.1|667701_669348_+|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.7e-289
WP_000448933.1|669374_670364_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|670658_671054_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217728.1|671424_672144_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959276.1|672264_673251_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082722.1|673298_675107_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	9.3e-47
WP_000896691.1|675566_676373_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214067.1|676395_676761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224620.1|676864_677458_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|677643_677991_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|678007_678643_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|678659_679469_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669938.1|679465_680320_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062404.1|680340_681726_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395156.1|681735_683580_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|683857_684628_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|684823_685909_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570704.1|686250_687819_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_000889176.1|687961_688720_+	esterase family protein	NA	NA	NA	NA	NA
WP_001060545.1|688885_689611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000355329.1|689612_690464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600387.1|691205_691715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001794241.1|691827_693036_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258649.1|692995_694171_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340133.1|694602_696087_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001794242.1|696067_696328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049957.1|696327_697890_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_000928413.1|698191_698995_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001794169.1|699213_701538_+|protease	serine protease	protease	W5SAB9	Pithovirus	26.8	4.0e-10
WP_160190011.1|701554_702913_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414169.1|703051_704563_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|705051_705621_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876825.1|705830_706049_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|706129_707116_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|707314_707491_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|707505_708108_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_099119695.1|708408_708486_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 51
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	711735	712377	2883314		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571191.1|711735_712377_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	5.0e-19
>prophage 52
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	717006	717297	2883314		Enterococcus_phage(100.0%)	1	NA	NA
WP_001794164.1|717006_717297_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	2.6e-07
>prophage 53
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	725600	726674	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676568.1|725600_726674_-	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	31.7	1.1e-15
>prophage 54
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	730340	734114	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074519.1|730340_734114_-	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	38.0	1.1e-54
>prophage 55
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	744351	759114	2883314		Synechococcus_phage(22.22%)	14	NA	NA
WP_000225845.1|744351_745212_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	1.2e-39
WP_000861576.1|745412_745895_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	8.0e-22
WP_001010391.1|745881_747006_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174050.1|747009_747714_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	41.6	7.3e-48
WP_000848351.1|747713_747977_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666808.1|747978_748650_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032734.1|748642_750832_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.2	5.1e-140
WP_000483716.1|750810_752295_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.4	8.5e-46
WP_000030814.1|752287_753316_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	7.6e-62
WP_000238673.1|753318_753885_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	3.6e-29
WP_000709288.1|753899_755378_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.5	9.2e-77
WP_001101912.1|755399_756647_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000273254.1|756914_757721_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_000921981.1|757713_759114_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.7	1.4e-10
>prophage 56
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	762293	766673	2883314		Streptococcus_phage(50.0%)	5	NA	NA
WP_000685075.1|762293_763466_+	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.6	1.5e-74
WP_000505964.1|763519_764062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000437472.1|764215_764482_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000040041.1|764484_766203_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_001289622.1|766439_766673_-	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	1.3e-09
>prophage 57
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	772787	773339	2883314		Synechococcus_phage(100.0%)	1	NA	NA
WP_000957036.1|772787_773339_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.2	1.6e-13
>prophage 58
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	777980	781623	2883314		Erysipelothrix_phage(50.0%)	4	NA	NA
WP_000260117.1|777980_779387_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000455584.1|779557_779833_+	UPF0223 family protein	NA	NA	NA	NA	NA
WP_001020627.1|779976_780516_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000433551.1|780528_781623_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
>prophage 59
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	803264	806175	2883314		Paramecium_bursaria_Chlorella_virus(50.0%)	5	NA	NA
WP_000757584.1|803264_804194_-	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	6.5e-12
WP_001049150.1|804432_804687_+	YlbG family protein	NA	NA	NA	NA	NA
WP_000814565.1|804689_805079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001263793.1|805148_805691_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000401377.1|805692_806175_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
>prophage 60
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	818154	819213	2883314	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|818154_819213_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 61
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	824091	828649	2883314		Bodo_saltans_virus(33.33%)	3	NA	NA
WP_000161937.1|824091_825804_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
WP_001249264.1|825813_828162_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	7.2e-15
WP_001018928.1|828334_828649_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
>prophage 62
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	840083	840434	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000669541.1|840083_840434_+	complement inhibitor SCIN-C	NA	A7TWS0	Staphylococcus_phage	50.0	1.9e-20
>prophage 63
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	843894	846070	2883314	transposase	Staphylococcus_virus(100.0%)	2	NA	NA
WP_001801391.1|843894_844122_+	hypothetical protein	NA	Q4ZBW5	Staphylococcus_virus	67.7	1.9e-18
WP_000277741.1|844423_846070_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 64
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	854981	855179	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245800.1|854981_855179_+	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	1.2e-19
>prophage 65
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	874535	878347	2883314	transposase,tRNA	Orpheovirus(50.0%)	2	NA	NA
WP_000384706.1|874535_877289_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	2.1e-90
WP_000121211.1|877399_878347_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
>prophage 66
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	882221	886832	2883314		Enterobacteria_phage(33.33%)	4	NA	NA
WP_001178615.1|882221_883529_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
WP_001016166.1|883556_884438_+	aspartate carbamoyltransferase	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.9	4.6e-31
WP_000767018.1|884455_885730_+	dihydroorotase	NA	NA	NA	NA	NA
WP_001190910.1|885731_886832_+	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	9.6e-63
>prophage 67
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	890799	891411	2883314		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|890799_891411_+	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 68
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	894725	896982	2883314		Abalone_herpesvirus(50.0%)	3	NA	NA
WP_000368225.1|894725_895349_+	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	6.1e-22
WP_000933956.1|895348_895567_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000722165.1|895782_896982_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
>prophage 69
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	901991	902927	2883314	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|901991_902927_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 70
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	906074	908069	2883314		Moumouvirus(100.0%)	1	NA	NA
WP_000579564.1|906074_908069_+	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 71
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	918439	920560	2883314		Trichoplusia_ni_ascovirus(33.33%)	3	NA	NA
WP_000167269.1|918439_919174_+	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
WP_000426914.1|919479_919713_+	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000043237.1|919828_920560_+	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
>prophage 72
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	933944	947615	2883314	protease,tRNA	Emiliania_huxleyi_virus(16.67%)	11	NA	NA
WP_000176401.1|933944_934712_+	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
WP_001020801.1|934820_935987_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000110252.1|936008_936917_+	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	2.3e-17
WP_001041658.1|937143_938262_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000672864.1|938289_939534_+	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_000620184.1|939705_940578_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_001557331.1|940751_942827_+	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000195263.1|942982_944290_+|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001015609.1|944707_945604_+	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	6.1e-31
WP_000072681.1|945600_946146_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_000379051.1|946211_947615_+|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	6.4e-27
>prophage 73
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	952389	953160	2883314		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473705.1|952389_953160_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 74
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	957433	969248	2883314	tRNA	Clostridium_phage(33.33%)	9	NA	NA
WP_000139497.1|957433_961744_+	PolC-type DNA polymerase III	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
WP_000036631.1|962033_962501_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_000097463.1|962521_963697_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000727423.1|963717_964002_+	YlxR family protein	NA	NA	NA	NA	NA
WP_000020856.1|963998_964316_+	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000043642.1|964320_966438_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000097322.1|966824_967175_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000282296.1|967344_968262_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000864182.1|968276_969248_+	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
>prophage 75
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	974388	979932	2883314		Mycobacterium_phage(33.33%)	4	NA	NA
WP_042907377.1|974388_976632_+	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
WP_001293307.1|976636_977350_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000089941.1|977380_978646_+	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_000664777.1|978645_979932_+	insulinase family protein	NA	G3MBJ8	Bacillus_virus	27.9	6.7e-15
>prophage 76
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	984131	985175	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|984131_985175_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 77
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	994589	1001071	2883314		Cafeteria_roenbergensis_virus(33.33%)	4	NA	NA
WP_000073334.1|994589_997208_+	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
WP_000516249.1|997220_999230_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.2	4.1e-59
WP_001077635.1|999235_999778_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_001103747.1|1000252_1001071_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	3.1e-26
>prophage 78
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1005609	1062809	2883314	head,transposase,tRNA,capsid	Staphylococcus_phage(38.89%)	66	NA	NA
WP_001574397.1|1005609_1006545_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_000561357.1|1006559_1006793_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_000448078.1|1007014_1007491_-	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
WP_000068622.1|1007602_1008841_+	GTPase HflX	NA	NA	NA	NA	NA
WP_000652040.1|1008859_1010098_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000624945.1|1010341_1010710_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001126604.1|1010728_1012069_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001659797.1|1012562_1012760_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_078367270.1|1013051_1013588_-|transposase	IS30 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	43.6	1.3e-28
WP_000746372.1|1013568_1014072_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001255381.1|1014180_1014537_-	cystatin-like fold lipoprotein	NA	NA	NA	NA	NA
WP_000810443.1|1014592_1015183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000247474.1|1015189_1016236_-	CHAP domain-containing protein	NA	A0A1X9I9L1	Staphylococcus_phage	36.9	8.1e-19
WP_001251205.1|1018078_1019437_-	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	29.9	4.0e-42
WP_001049264.1|1019490_1021986_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_000358146.1|1022020_1022404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000015642.1|1022415_1022676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000386891.1|1025063_1025366_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000805733.1|1025379_1025700_-	DUF961 domain-containing protein	NA	NA	NA	NA	NA
WP_000134547.1|1025850_1026135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001071312.1|1026820_1027033_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	3.6e-19
WP_001002343.1|1027329_1027536_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	56.7	1.9e-12
WP_031788482.1|1028237_1028348_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1028740_1028926_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000121213.1|1029137_1030085_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	1.6e-183
WP_000477487.1|1030511_1030928_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000585095.1|1032448_1032700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077670290.1|1032760_1033426_+|capsid	phage capsid protein	capsid	A0A1J0MF61	Staphylococcus_phage	53.0	4.6e-60
WP_000905625.1|1033427_1033625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791415.1|1033689_1033818_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000414196.1|1033784_1034369_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791418.1|1035036_1035210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217295.1|1035220_1035415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000906224.1|1035591_1035840_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000429703.1|1035990_1036269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001574384.1|1036314_1036581_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000600810.1|1036577_1036715_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077670291.1|1036782_1037118_+|head	phage head morphogenesis protein	head	A0A1J0MFV1	Staphylococcus_phage	60.4	2.6e-27
WP_001053369.1|1037124_1037322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_054105079.1|1037868_1038894_-	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_000435074.1|1039163_1039361_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001160617.1|1039417_1040899_+	cardiolipin synthase	NA	NA	NA	NA	NA
WP_001794121.1|1041072_1041981_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.6	9.8e-21
WP_000603961.1|1041949_1042681_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_160190017.1|1042684_1043782_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000624452.1|1043778_1044381_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001027143.1|1044493_1044682_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000841344.1|1044820_1045354_+	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_000011827.1|1045496_1046351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001819878.1|1046681_1047257_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000868645.1|1047310_1048693_-	aspartate kinase	NA	NA	NA	NA	NA
WP_000735863.1|1048883_1050164_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_001255454.1|1050169_1051231_+	threonine synthase	NA	NA	NA	NA	NA
WP_000073177.1|1051232_1052147_+	homoserine kinase	NA	NA	NA	NA	NA
WP_000186306.1|1052204_1053008_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_094409958.1|1053081_1054648_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000580201.1|1054962_1055277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001791424.1|1055251_1055356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000389946.1|1055495_1056950_-	amino acid permease	NA	NA	NA	NA	NA
WP_000089857.1|1057153_1058671_+	catalase	NA	A0A2K9L0T1	Tupanvirus	43.8	2.7e-92
WP_001265708.1|1058761_1058911_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_001085657.1|1059364_1059634_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_000688127.1|1059790_1060768_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001791425.1|1060764_1060869_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000380738.1|1060942_1061806_+	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	1.2e-15
WP_001208760.1|1062185_1062809_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	3.5e-17
>prophage 79
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1066958	1068080	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691309.1|1066958_1068080_+	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.1	2.1e-09
>prophage 80
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1071749	1073396	2883314		Vibrio_phage(100.0%)	1	NA	NA
WP_001088983.1|1071749_1073396_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.5	1.9e-22
>prophage 81
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1079014	1083408	2883314		Bacillus_virus(50.0%)	2	NA	NA
WP_160190087.1|1079014_1081006_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	1.0e-115
WP_001289586.1|1081005_1083408_+	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.2	1.1e-92
>prophage 82
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1092677	1096243	2883314	transposase	Staphylococcus_virus(50.0%)	3	NA	NA
WP_000277741.1|1092677_1094324_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_001123276.1|1094647_1094833_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA	NA
WP_000283027.1|1094980_1096243_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	1.7e-95
>prophage 83
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1100561	1102914	2883314		Acinetobacter_phage(100.0%)	2	NA	NA
WP_000604802.1|1100561_1101128_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	31.8	1.7e-23
WP_000153717.1|1102131_1102914_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	36.7	1.2e-27
>prophage 84
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1110395	1111097	2883314		Tupanvirus(100.0%)	1	NA	NA
WP_000571253.1|1110395_1111097_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.0e-13
>prophage 85
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1114511	1117965	2883314		Streptococcus_phage(50.0%)	3	NA	NA
WP_000077549.1|1114511_1116326_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.3	2.3e-154
WP_000974850.1|1116465_1117107_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000079448.1|1117113_1117965_-	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	6.8e-16
>prophage 86
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1122390	1123992	2883314		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|1122390_1123992_+	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 87
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1131834	1136860	2883314	lysis	Yellowstone_lake_phycodnavirus(33.33%)	7	NA	NA
WP_000216956.1|1131834_1133100_+	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.0	4.0e-12
WP_000876206.1|1133335_1133737_-	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000809131.1|1133933_1134134_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000269923.1|1134304_1134613_-	DUF1033 family protein	NA	NA	NA	NA	NA
WP_001215907.1|1134774_1135044_+	acylphosphatase	NA	NA	NA	NA	NA
WP_001794103.1|1135062_1135692_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_000138413.1|1135723_1136860_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
>prophage 88
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1140395	1141187	2883314		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|1140395_1141187_-	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 89
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1147555	1149567	2883314		Hokovirus(50.0%)	2	NA	NA
WP_000166793.1|1147555_1148911_-	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
WP_000192137.1|1148907_1149567_-	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
>prophage 90
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1152975	1163432	2883314	transposase	Staphylococcus_phage(50.0%)	14	NA	NA
WP_000342154.1|1152975_1154466_-	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	1.7e-22
WP_160190018.1|1154704_1155652_+|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	99.7	3.3e-184
WP_000801007.1|1155724_1155946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000473654.1|1155945_1156446_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000913317.1|1156457_1156886_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000159899.1|1156878_1157412_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000166055.1|1157497_1158337_-	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	76.5	5.1e-48
WP_000175746.1|1158351_1158831_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000934885.1|1159030_1159987_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000995290.1|1160410_1160848_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000404628.1|1160863_1161988_-	virulence factor C	NA	NA	NA	NA	NA
WP_001165814.1|1162025_1162277_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001814377.1|1162288_1162483_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000282169.1|1162727_1163432_+	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.3	1.9e-11
>prophage 91
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1202024	1202903	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_001133021.1|1202024_1202903_-	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	1.4e-19
>prophage 92
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1212367	1212994	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_001108885.1|1212367_1212994_+	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 93
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1216685	1224192	2883314	tRNA	Temperate_phage(25.0%)	5	NA	NA
WP_000362222.1|1216685_1217372_-	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	5.5e-08
WP_000858795.1|1217700_1218993_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	4.3e-54
WP_000525060.1|1219314_1222008_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049917.1|1222031_1223003_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361536.1|1222989_1224192_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	1.4e-35
>prophage 94
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1227564	1228140	2883314		Bacillus_virus(100.0%)	1	NA	NA
WP_000005208.1|1227564_1228140_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	4.6e-08
>prophage 95
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1231802	1236943	2883314		Pandoravirus(25.0%)	6	NA	NA
WP_001269937.1|1231802_1232969_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.3	1.5e-34
WP_160190021.1|1233437_1233887_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	4.1e-28
WP_160190088.1|1233978_1234923_-	heptaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	24.8	1.1e-11
WP_000774679.1|1234939_1235665_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450555.1|1235667_1236240_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1236670_1236943_-	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
>prophage 96
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1246350	1249029	2883314		Acanthamoeba_polyphaga_moumouvirus(50.0%)	3	NA	NA
WP_000902107.1|1246350_1247730_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.3	2.9e-56
WP_001163814.1|1247719_1248673_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1248780_1249029_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
>prophage 97
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1252288	1261785	2883314		Staphylococcus_phage(25.0%)	10	NA	NA
WP_073409321.1|1252288_1253191_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	40.0	8.0e-31
WP_001662878.1|1253205_1254465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001574168.1|1254451_1255384_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987777.1|1255635_1257387_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
WP_000064078.1|1257367_1258093_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000159577.1|1258225_1258963_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000368652.1|1258955_1259498_-	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000273367.1|1259490_1260222_-	segregation and condensation protein A	NA	NA	NA	NA	NA
WP_001183424.1|1260313_1260820_+	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000447733.1|1260897_1261785_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
>prophage 98
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1267449	1268934	2883314		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|1267449_1268934_+	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 99
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1276280	1277687	2883314		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|1276280_1277687_-	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 100
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1284515	1291085	2883314		Indivirus(66.67%)	6	NA	NA
WP_001291540.1|1284515_1285937_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	6.6e-40
WP_000942216.1|1286087_1287767_-	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001124985.1|1287782_1288235_-	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_160190023.1|1288665_1289547_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	26.5	4.4e-10
WP_000159866.1|1289524_1289755_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_001286928.1|1289747_1291085_-	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
>prophage 101
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1298584	1301396	2883314		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_160190024.1|1298584_1300057_-	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.1	1.1e-80
WP_000019697.1|1300049_1301396_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	39.9	2.1e-64
>prophage 102
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1306940	1307564	2883314		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|1306940_1307564_-	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 103
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1313736	1327464	2883314	tRNA	Klosneuvirus(25.0%)	13	NA	NA
WP_000863556.1|1313736_1314336_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
WP_001095260.1|1314611_1315022_-	transcriptional repressor	NA	NA	NA	NA	NA
WP_000564316.1|1315008_1315872_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001213908.1|1315913_1316699_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924211.1|1316824_1317715_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062173.1|1317724_1319071_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	1.4e-55
WP_000683921.1|1319184_1320285_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	30.6	3.0e-08
WP_000624581.1|1320287_1320965_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1321095_1322202_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217253.1|1322425_1324225_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	3.5e-54
WP_160190026.1|1324285_1325104_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001794939.1|1325114_1325738_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001030080.1|1326072_1327464_+|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
>prophage 104
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1330518	1331466	2883314		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117769.1|1330518_1331466_-	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	4.9e-47
>prophage 105
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1337935	1341043	2883314		Catovirus(50.0%)	2	NA	NA
WP_001119020.1|1337935_1339075_-	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	26.5	6.8e-27
WP_000034716.1|1339210_1341043_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
>prophage 106
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1344478	1350642	2883314		Streptococcus_phage(33.33%)	5	NA	NA
WP_000368338.1|1344478_1346302_-	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
WP_001274017.1|1346647_1346899_+	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_001282570.1|1346943_1347918_-	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_160190089.1|1347974_1350122_-	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	9.1e-33
WP_000439692.1|1350180_1350642_-	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
>prophage 107
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1367106	1402704	2883314	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_000648617.1|1367106_1367730_-	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
WP_000848304.1|1367729_1368998_-	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000137775.1|1369009_1369933_-	U32 family peptidase	NA	NA	NA	NA	NA
WP_000342267.1|1369935_1370574_-	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	1.6e-09
WP_000134779.1|1370858_1371167_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000939059.1|1371181_1371610_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000426912.1|1371613_1371874_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000734077.1|1371936_1374567_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_001283316.1|1374909_1377387_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_160190029.1|1377388_1378057_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000066097.1|1378738_1379857_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000409167.1|1379857_1381000_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000985898.1|1381309_1382323_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000008061.1|1382559_1382706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752909.1|1382745_1382928_-	CsbD family protein	NA	NA	NA	NA	NA
WP_000704122.1|1383027_1383450_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000102741.1|1383534_1384809_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.9	6.3e-106
WP_000682640.1|1384969_1385743_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_001791215.1|1385742_1385871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000044796.1|1386203_1387970_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_000590826.1|1387985_1389248_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000717800.1|1389708_1390584_-	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000869979.1|1390580_1391033_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_001058583.1|1391044_1393234_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000364542.1|1393661_1394180_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000595001.1|1394201_1396475_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	6.2e-64
WP_000749802.1|1396677_1398957_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1399231_1399492_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1399510_1400650_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1400672_1401698_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1401699_1402704_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 108
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1412819	1415450	2883314	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425358.1|1412819_1415450_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.4	3.7e-153
>prophage 109
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1425016	1436171	2883314	protease,tRNA	Bacillus_virus(20.0%)	12	NA	NA
WP_000472293.1|1425016_1426279_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	61.7	1.1e-139
WP_000127572.1|1426429_1427731_-	trigger factor	NA	NA	NA	NA	NA
WP_001790560.1|1427778_1427889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001280014.1|1427893_1428823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000032653.1|1428841_1429450_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	36.4	1.7e-21
WP_001138360.1|1429591_1429948_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001125540.1|1429994_1430195_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001791219.1|1430223_1430751_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	5.3e-11
WP_000049150.1|1430980_1432474_-	amino acid permease	NA	NA	NA	NA	NA
WP_000435132.1|1432900_1434838_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_016186894.1|1435062_1435158_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000808621.1|1435250_1436171_-	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
>prophage 110
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1440085	1448250	2883314		Bacillus_virus(25.0%)	5	NA	NA
WP_001114454.1|1440085_1440958_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
WP_160190030.1|1440973_1443604_-	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	32.7	1.8e-46
WP_000849445.1|1443896_1445384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_073392727.1|1445884_1447546_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.0	1.7e-34
WP_000080025.1|1447548_1448250_-	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
>prophage 111
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1453133	1454891	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232655.1|1453133_1454891_-	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	3.3e-41
>prophage 112
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1459823	1463021	2883314		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226930.1|1459823_1463021_-	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.7	5.5e-135
>prophage 113
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1480603	1484739	2883314		Paramecium_bursaria_Chlorella_virus(50.0%)	4	NA	NA
WP_000174275.1|1480603_1481347_-	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	29.9	8.3e-18
WP_000553919.1|1481426_1481873_+	OsmC family protein	NA	NA	NA	NA	NA
WP_000291426.1|1481987_1483148_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000808837.1|1483134_1484739_+	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
>prophage 114
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1488507	1491138	2883314	protease,tRNA	uncultured_Mediterranean_phage(50.0%)	2	NA	NA
WP_001279341.1|1488507_1489782_+|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
WP_000186029.1|1489875_1491138_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
>prophage 115
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1497742	1499449	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160190031.1|1497742_1499449_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.6	1.8e-273
>prophage 116
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1508021	1513391	2883314		Mycobacterium_phage(50.0%)	3	NA	NA
WP_160190033.1|1508021_1511846_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
WP_001048374.1|1511866_1512505_-	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_001091387.1|1512533_1513391_-	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
>prophage 117
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1518974	1522911	2883314		Enterobacteria_phage(50.0%)	4	NA	NA
WP_000690628.1|1518974_1519568_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	1.1e-41
WP_001284656.1|1519831_1520212_-	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_001096374.1|1520201_1521959_-	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_000733283.1|1522065_1522911_+	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	NA	A0A1B0VBP7	Salmonella_phage	34.0	1.5e-31
>prophage 118
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1531048	1601338	2883314	protease,tRNA	Staphylococcus_phage(93.18%)	64	NA	NA
WP_000284993.1|1531048_1532317_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	5.9e-56
WP_160190034.1|1532433_1539003_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	88.6	1.7e-295
WP_000836472.1|1539326_1539638_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	96.1	4.5e-50
WP_160190035.1|1539659_1542074_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	98.7	0.0e+00
WP_001025064.1|1542365_1543547_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	9.6e-218
WP_000526541.1|1543656_1544610_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	99.3	6.4e-79
WP_000764425.1|1544606_1545170_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	95.7	1.1e-99
WP_000757543.1|1545288_1545690_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266099.1|1546262_1547090_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_014937042.1|1547092_1547212_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196351.1|1547323_1548325_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	5.0e-183
WP_001008556.1|1548446_1548911_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	97.4	1.9e-68
WP_001159032.1|1548923_1550105_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493891.1|1550115_1550748_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	8.4e-112
WP_001819953.1|1550754_1551786_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.3	5.8e-195
WP_001261683.1|1552278_1553781_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	5.0e-30
WP_000221181.1|1554423_1554738_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	97.1	1.7e-52
WP_000989104.1|1554737_1556030_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	95.1	2.6e-216
WP_001032833.1|1556116_1556971_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1557246_1557471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671059.1|1557669_1558140_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	85.8	7.7e-70
WP_001152695.1|1558252_1558696_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030476.1|1558682_1559126_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	77.4	2.4e-49
WP_001168914.1|1559423_1560059_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000492901.1|1560225_1560846_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001096494.1|1561303_1562017_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091444.1|1562275_1562578_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1562832_1563198_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623481.1|1563194_1563548_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	97.4	4.2e-20
WP_064284457.1|1563797_1564631_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	2.1e-158
WP_000366165.1|1564842_1565751_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	99.7	9.8e-138
WP_000933819.1|1565875_1567069_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000109909.1|1567440_1569033_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_001801476.1|1569325_1570072_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	97.2	3.3e-139
WP_000672010.1|1570076_1570550_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	9.5e-84
WP_000718107.1|1570615_1570873_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778539.1|1570869_1571871_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	96.7	8.5e-183
WP_000348372.1|1571875_1573354_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.2	2.4e-282
WP_016186903.1|1573512_1573968_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	94.5	3.5e-75
WP_001794016.1|1574269_1574920_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	1.0e-51
WP_000070654.1|1575000_1575996_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.2	3.8e-74
WP_000669038.1|1576071_1576698_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	84.1	4.5e-81
WP_000627550.1|1576738_1577083_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	5.1e-55
WP_000414222.1|1577180_1577753_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_160190036.1|1577901_1579269_-	FRG domain-containing protein	NA	NA	NA	NA	NA
WP_000125075.1|1579268_1579838_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	54.8	2.2e-39
WP_000747804.1|1580030_1580477_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001801861.1|1580927_1581023_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1581145_1581247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000731421.1|1581863_1582307_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000182553.1|1583273_1585694_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_001819963.1|1585819_1586179_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000619920.1|1586406_1586856_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001053714.1|1586898_1588509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000095390.1|1588523_1588823_+	secretion protein	NA	NA	NA	NA	NA
WP_000413389.1|1589084_1590902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000072622.1|1590938_1592093_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	36.3	7.8e-39
WP_001794363.1|1592085_1593825_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	3.2e-286
WP_001038742.1|1594004_1594724_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	1.0e-129
WP_001038734.1|1594893_1595610_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	97.1	6.6e-129
WP_001038766.1|1596655_1597372_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.6	5.5e-83
WP_001039022.1|1597495_1598215_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	93.7	6.4e-124
WP_000595635.1|1599229_1599745_+	membrane protein	NA	NA	NA	NA	NA
WP_000711499.1|1599991_1601338_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	51.1	2.5e-65
>prophage 119
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1604592	1608872	2883314		Staphylococcus_phage(80.0%)	5	NA	NA
WP_001235656.1|1604592_1605348_-	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	40.8	2.3e-39
WP_000764684.1|1605386_1606172_-	staphylococcal enterotoxin type C1/U	NA	A0A097PAT7	Streptococcus_pyogenes_phage	42.7	2.9e-45
WP_000721567.1|1606325_1607054_-	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.8	1.3e-28
WP_000821649.1|1607088_1607808_-	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	34.6	4.9e-23
WP_147612242.1|1608089_1608872_-	exotoxin	NA	A0A1X9H080	Staphylococcus_phage	38.6	8.7e-34
>prophage 120
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1616735	1617476	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000216874.1|1616735_1617476_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
>prophage 121
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1627064	1627409	2883314		Streptococcus_phage(100.0%)	1	NA	NA
WP_000290301.1|1627064_1627409_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
>prophage 122
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1636311	1709939	2883314	plate,tail,head,tRNA,terminase,holin,integrase,capsid,portal	Staphylococcus_phage(71.88%)	84	1694730:1694745	1717209:1717224
WP_000181394.1|1636311_1636782_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001793998.1|1636786_1637929_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|1638064_1638793_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649898.1|1638779_1640237_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063551.1|1640495_1641557_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000110011.1|1650385_1650832_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869463.1|1650928_1651879_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939530.1|1651884_1652340_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001011603.1|1652420_1653710_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|1654002_1655097_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000597238.1|1655287_1657024_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251252.1|1657314_1657857_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284755.1|1658159_1659197_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379091.1|1659348_1660326_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886472.1|1660586_1661423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000535849.1|1661431_1662949_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_000435806.1|1662963_1663278_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124422.1|1663255_1664074_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|1664334_1665144_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163281.1|1665484_1666000_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|1666129_1666291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|1666637_1666718_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000051376.1|1666830_1667445_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	100.0	1.0e-109
WP_001148137.1|1668100_1669546_-	CHAP domain-containing protein	NA	Q4ZAM7	Staphylococcus_virus	100.0	1.8e-295
WP_000354132.1|1669526_1669964_-|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_000398878.1|1670019_1670415_-	hypothetical protein	NA	Q4ZBP5	Staphylococcus_phage	100.0	2.7e-68
WP_061389060.1|1670420_1671593_-|plate	BppU family phage baseplate upper protein	plate	Q4ZBH2	Staphylococcus_virus	99.0	1.7e-195
WP_064272851.1|1671605_1673504_-	CHAP domain-containing protein	NA	B2ZZ02	Staphylococcus_phage	98.7	0.0e+00
WP_000466779.1|1673640_1673940_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	99.0	1.3e-46
WP_001800921.1|1673980_1674154_-	XkdX family protein	NA	A0A059T7K6	Staphylococcus_phage	100.0	1.3e-27
WP_000705907.1|1674157_1674535_-	DUF2977 domain-containing protein	NA	Q4ZDT8	Staphylococcus_virus	99.2	8.1e-54
WP_103246176.1|1674534_1676358_-|plate	BppU family phage baseplate upper protein	plate	A0A0H3U4S6	Staphylococcus_phage	99.3	0.0e+00
WP_000369020.1|1676357_1678268_-	hypothetical protein	NA	Q4ZDD6	Staphylococcus_virus	99.2	0.0e+00
WP_160190037.1|1678282_1680184_-	peptidase	NA	I1W634	Staphylococcus_phage	99.5	0.0e+00
WP_001557971.1|1680192_1681140_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
WP_160190038.1|1681152_1684620_-	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	99.2	1.4e-280
WP_064272848.1|1684636_1684981_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	99.1	9.4e-57
WP_001100163.1|1685010_1685376_-	hypothetical protein	NA	Q8SDT9	Staphylococcus_phage	100.0	2.8e-59
WP_000002583.1|1685437_1686019_-|tail	phage major tail protein, TP901-1 family	tail	Q8SDU0	Staphylococcus_phage	100.0	4.9e-106
WP_000188649.1|1686037_1686421_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_001017811.1|1686432_1686780_-	HK97 gp10 family phage protein	NA	I1W643	Staphylococcus_phage	100.0	5.3e-60
WP_001268304.1|1686779_1687082_-	hypothetical protein	NA	E0Y3L3	Staphylococcus_virus	96.0	2.8e-49
WP_000208959.1|1687078_1687411_-|head,tail	phage head-tail connector protein	head,tail	E0Y3L2	Staphylococcus_virus	100.0	7.1e-54
WP_001114085.1|1687419_1687707_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_000438512.1|1687728_1688703_-|capsid	phage major capsid protein	capsid	S4SVE6	Staphylococcus_phage	100.0	2.2e-183
WP_000354309.1|1688716_1689331_-	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	100.0	2.9e-40
WP_000072206.1|1689465_1689636_-	hypothetical protein	NA	Q4ZDV7	Staphylococcus_virus	100.0	3.3e-23
WP_064272847.1|1689708_1690704_-|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	99.7	2.9e-183
WP_050957632.1|1690710_1692249_-|portal	phage portal protein	portal	S4V6D8	Staphylococcus_phage	99.4	3.8e-291
WP_046377028.1|1692259_1693549_-|terminase	PBSX family phage terminase large subunit	terminase	B7T0C6	Staphylococcus_virus	98.6	9.0e-254
WP_043856039.1|1693551_1694046_-|terminase	terminase small subunit	terminase	B7T0C5	Staphylococcus_virus	98.2	8.6e-88
WP_000162699.1|1694232_1694655_-	RinA family phage transcriptional activator	NA	Q8SDV1	Staphylococcus_phage	100.0	1.6e-74
WP_000989973.1|1694678_1694825_-	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	97.9	9.8e-16
1694730:1694745	attL	TTTAACTTTCACATCA	NA	NA	NA	NA
WP_160190039.1|1694825_1694999_-	transcriptional regulator	NA	S4SVE4	Staphylococcus_phage	96.5	2.4e-21
WP_000483477.1|1694991_1695228_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_103246174.1|1695252_1695489_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
WP_000185653.1|1695525_1696056_-	dUTP pyrophosphatase	NA	C8CH05	Staphylococcus_phage	100.0	1.7e-94
WP_160190040.1|1696048_1696297_-	DUF1024 family protein	NA	A0A2K9VBU0	Staphylococcus_phage	98.8	1.2e-37
WP_064272844.1|1696311_1696560_-	hypothetical protein	NA	A0A1W6JPX8	Staphylococcus_phage	96.3	8.0e-42
WP_000029373.1|1696560_1696920_-	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	100.0	3.5e-62
WP_001187256.1|1696920_1697106_-	DUF3113 family protein	NA	B2ZYW2	Staphylococcus_phage	100.0	3.2e-27
WP_000049798.1|1697110_1697515_-	DUF1064 domain-containing protein	NA	G4KNP2	Staphylococcus_phage	100.0	1.6e-68
WP_001123688.1|1697524_1697746_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	100.0	1.3e-35
WP_000803056.1|1697913_1698693_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
WP_000031113.1|1698704_1699427_-	helix-turn-helix domain-containing protein	NA	A7TWN2	Staphylococcus_phage	100.0	1.6e-106
WP_001816890.1|1699419_1699827_-	HNH endonuclease	NA	A7TWN1	Staphylococcus_phage	100.0	7.1e-72
WP_000414755.1|1699953_1700235_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_038806018.1|1700373_1701045_-	phi PV83 orf 19-like protein	NA	A7TWM9	Staphylococcus_phage	99.6	2.6e-127
WP_000704705.1|1701057_1701609_-	single-stranded DNA-binding protein	NA	Q4ZBM4	Staphylococcus_phage	100.0	3.4e-101
WP_000134097.1|1701637_1702426_-	ATP-binding protein	NA	Q4ZBM5	Staphylococcus_phage	100.0	2.6e-142
WP_000815403.1|1702418_1702640_-	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000291090.1|1702649_1702910_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000066017.1|1703004_1703166_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_000594789.1|1703158_1703380_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_160190041.1|1703451_1704117_+	hypothetical protein	NA	Q9G033	Staphylococcus_virus	97.3	1.0e-115
WP_000187184.1|1704245_1704470_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001002754.1|1704470_1705238_-	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	98.4	1.8e-140
WP_000108121.1|1705237_1705432_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	96.9	6.9e-25
WP_160190042.1|1705694_1706027_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	97.3	1.3e-55
WP_160190043.1|1706043_1706718_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	94.2	2.9e-118
WP_000661378.1|1706746_1707472_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	95.4	7.4e-120
WP_000392183.1|1707688_1708621_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|1708600_1708780_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_064272841.1|1708892_1709939_+|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	99.1	1.4e-199
1717209:1717224	attR	TTTAACTTTCACATCA	NA	NA	NA	NA
>prophage 123
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1715968	1716598	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|1715968_1716598_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 124
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1721579	1721993	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001643743.1|1721579_1721993_-	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.5	3.0e-17
>prophage 125
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1725446	1831367	2883314	tail,head,tRNA,terminase,holin,protease,integrase,capsid,transposase,portal	Staphylococcus_phage(85.37%)	123	1730624:1730643	1825021:1825040
WP_000613738.1|1725446_1726001_+	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
WP_000140179.1|1726067_1727138_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000548777.1|1727384_1727915_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_001147874.1|1728084_1729446_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	43.0	1.5e-102
WP_001231458.1|1729526_1730474_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.5e-16
1730624:1730643	attL	TTGGGGCCCCACCCCAACTT	NA	NA	NA	NA
WP_001791535.1|1731111_1731258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000545373.1|1731296_1732724_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027924.1|1732736_1734194_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1734195_1734498_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957023.1|1734864_1736403_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831695.1|1736491_1737691_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774552.1|1737703_1739707_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	9.8e-114
WP_000992924.1|1739710_1741903_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272063.1|1741899_1742592_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1742774_1743077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1743185_1744481_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827736.1|1745331_1746498_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434532.1|1746528_1746852_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669861.1|1747145_1747319_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1747299_1747902_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040861.1|1748171_1748993_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_000284434.1|1748985_1750455_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.5	8.5e-107
WP_000897633.1|1750638_1751715_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177832.1|1751734_1752529_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_031788442.1|1752600_1752708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323171.1|1752718_1754281_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275719.1|1754485_1755583_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	8.7e-48
WP_000149686.1|1755955_1756516_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1756568_1757498_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1757689_1757863_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021224.1|1757914_1759294_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|1759413_1760442_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1760712_1761114_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1761170_1761344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188074.1|1761794_1762835_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713064.1|1762891_1763734_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033968.1|1763730_1764288_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1764347_1764872_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1764992_1765556_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221650.1|1765619_1766360_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1766359_1767232_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645732.1|1767228_1767909_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991315.1|1767909_1768806_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1768802_1769183_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681966.1|1769440_1769617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1769858_1769957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160190044.1|1770156_1771443_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000277741.1|1771690_1773337_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_000669728.1|1773634_1775704_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1776661_1776841_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1777151_1777412_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1777464_1777815_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|1778500_1778950_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1779044_1779503_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|1780029_1780521_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1780711_1781467_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1781478_1781733_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1781784_1781892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1781944_1782121_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750406.1|1782229_1783003_-	staphylococcal enterotoxin type A	NA	A0EX09	Staphylococcus_phage	100.0	2.2e-146
WP_000340977.1|1783423_1783798_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1783853_1784141_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1784187_1784340_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_031783569.1|1784329_1788115_-	phage minor structural protein	NA	A0EX05	Staphylococcus_phage	99.8	0.0e+00
WP_000567408.1|1788130_1789615_-|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	100.0	1.2e-297
WP_160190045.1|1789611_1794141_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	99.9	0.0e+00
WP_001096355.1|1794385_1794736_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1794785_1795010_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268735.1|1795051_1795696_-|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_000565498.1|1795696_1796104_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1796100_1796505_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1796501_1796864_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1796847_1797132_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1797121_1797406_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1797425_1798571_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|1798594_1799332_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|1799315_1800503_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1800518_1802180_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1802176_1802521_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1802650_1802950_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1803181_1803598_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1803625_1803826_-	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|1803825_1803975_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|1803971_1804358_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|1804354_1804561_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000185659.1|1804597_1805140_-	dUTP pyrophosphatase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
WP_000028422.1|1805132_1805315_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
WP_001065091.1|1805304_1805556_-	DUF1024 family protein	NA	A0EWY0	Staphylococcus_phage	100.0	1.9e-38
WP_000131366.1|1805727_1805970_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|1805973_1806342_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000338531.1|1806672_1806891_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	98.6	1.2e-36
WP_000934764.1|1807800_1808271_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_071621397.1|1808271_1808889_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|1808969_1809890_-	recombinase	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_000700577.1|1809891_1811835_-	AAA family ATPase	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1811843_1812107_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291503.1|1812115_1812376_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_000165375.1|1812356_1812683_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
WP_000066017.1|1812777_1812939_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_001120197.1|1812935_1813256_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|1813314_1813947_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|1813961_1814102_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148855.1|1814132_1814330_-	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_001148605.1|1814345_1815098_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_000128907.1|1815148_1815478_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	100.0	2.7e-53
WP_001025874.1|1815466_1815682_-	DUF2829 domain-containing protein	NA	A0EWV9	Staphylococcus_phage	100.0	6.3e-35
WP_160190046.1|1815746_1815896_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_160190047.1|1815858_1816572_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	99.6	4.5e-130
WP_000759682.1|1816587_1817520_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1817525_1817867_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_048517765.1|1818070_1818217_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	2.9e-20
WP_000825947.1|1818352_1818817_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_000857191.1|1818875_1819913_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	100.0	9.1e-180
WP_000595617.1|1821052_1822072_-	beta-channel forming cytolysin	NA	A0A2I6PEU3	Staphylococcus_phage	39.6	3.4e-54
WP_000791402.1|1822093_1823149_-	succinyl-diaminopimelate desuccinylase	NA	A0A2I6PER8	Staphylococcus_phage	34.6	7.9e-38
WP_000206618.1|1823580_1824804_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_001045073.1|1825242_1826550_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
1825021:1825040	attR	TTGGGGCCCCACCCCAACTT	NA	NA	NA	NA
WP_001573771.1|1827127_1827469_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	46.0	4.1e-20
WP_001573769.1|1827458_1827755_-	hypothetical protein	NA	C8CH40	Staphylococcus_phage	40.4	6.7e-11
WP_000201397.1|1827751_1827931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000240651.1|1828472_1830089_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	2.6e-157
WP_000917289.1|1830164_1830449_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197638.1|1830623_1831367_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 126
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1837589	1851664	2883314	tRNA	uncultured_Caudovirales_phage(16.67%)	11	NA	NA
WP_000688492.1|1837589_1838306_+	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
WP_001253292.1|1838679_1839639_-	carbohydrate kinase	NA	NA	NA	NA	NA
WP_001791588.1|1839635_1841120_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.8	5.2e-19
WP_000790325.1|1841268_1842219_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_001052261.1|1842402_1843653_-	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	9.0e-41
WP_000581078.1|1843861_1844086_-	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_073392939.1|1844145_1845174_-	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_001283612.1|1845530_1846166_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_000602046.1|1846418_1848347_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	30.1	3.2e-53
WP_000106312.1|1848714_1850325_+	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	27.4	5.1e-20
WP_000159047.1|1850638_1851664_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.9	3.1e-63
>prophage 127
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1855424	1860148	2883314		Yellowstone_lake_phycodnavirus(50.0%)	4	NA	NA
WP_000047828.1|1855424_1857194_+	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.1	4.1e-63
WP_000196911.1|1857193_1857448_+	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_072399972.1|1857569_1858589_+	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000094572.1|1858618_1860148_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.6	9.4e-08
>prophage 128
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1874261	1877645	2883314		Bacillus_phage(50.0%)	5	NA	NA
WP_001041107.1|1874261_1875032_-	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	1.3e-21
WP_001190825.1|1875006_1875486_-	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001052491.1|1875487_1875814_-	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_000390829.1|1875932_1876934_-	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_000621176.1|1877282_1877645_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
>prophage 129
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1882795	1884823	2883314		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546609.1|1882795_1884823_-	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	3.9e-25
>prophage 130
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1890497	1892018	2883314		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178940.1|1890497_1892018_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 131
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1900210	1900858	2883314		Moumouvirus(100.0%)	1	NA	NA
WP_001187612.1|1900210_1900858_+	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	4.7e-09
>prophage 132
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1906940	1907336	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_000932696.1|1906940_1907336_-	single-stranded DNA-binding protein	NA	A0A1B1PAE7	Bacillus_phage	36.8	3.0e-14
>prophage 133
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1918055	1925808	2883314		Catovirus(25.0%)	9	NA	NA
WP_000723407.1|1918055_1919186_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	31.1	1.0e-27
WP_000048712.1|1919209_1919839_-	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000120494.1|1919866_1921105_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000654191.1|1921131_1921656_-	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000697334.1|1921762_1922182_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_001801520.1|1922178_1923276_-	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.6	3.6e-41
WP_000248730.1|1923308_1924145_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_000460244.1|1924131_1925208_-	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000273356.1|1925208_1925808_-	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
>prophage 134
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1933611	1935222	2883314		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|1933611_1935222_-	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 135
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1943155	1946988	2883314		Geobacillus_virus(50.0%)	4	NA	NA
WP_001242308.1|1943155_1944457_-	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.7	1.4e-132
WP_001083335.1|1944736_1945399_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_000160304.1|1945713_1946424_+	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_000070866.1|1946544_1946988_-	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
>prophage 136
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1955494	1962912	2883314	transposase	Staphylococcus_virus(33.33%)	6	NA	NA
WP_000277741.1|1955494_1957141_+|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
WP_073392962.1|1957566_1957671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001792784.1|1958350_1958509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103246171.1|1959167_1960025_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_000908186.1|1960092_1960875_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	5.7e-09
WP_000334466.1|1961106_1962912_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.6	2.6e-97
>prophage 137
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1980154	1981063	2883314		Klosneuvirus(100.0%)	1	NA	NA
WP_000162591.1|1980154_1981063_-	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.7	1.2e-26
>prophage 138
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	1996863	1997832	2883314		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|1996863_1997832_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 139
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2008035	2009598	2883314		Vibrio_phage(100.0%)	1	NA	NA
WP_000792332.1|2008035_2009598_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	3.5e-18
>prophage 140
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2013566	2014979	2883314		Pandoravirus(100.0%)	1	NA	NA
WP_000169223.1|2013566_2014979_-	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	5.0e-48
>prophage 141
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2021299	2024362	2883314		Orpheovirus(50.0%)	5	NA	NA
WP_001573518.1|2021299_2022040_+	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	30.3	7.3e-14
WP_000333457.1|2022297_2022906_-	DUF3885 domain-containing protein	NA	NA	NA	NA	NA
WP_001293423.1|2022919_2023213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001573519.1|2023167_2023293_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001015495.1|2023513_2024362_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.4	1.3e-43
>prophage 142
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2027740	2036303	2883314		Clostridium_phage(33.33%)	8	NA	NA
WP_001044451.1|2027740_2028595_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	34.8	1.3e-06
WP_000044369.1|2028805_2029621_-	hydrolase	NA	NA	NA	NA	NA
WP_000769709.1|2029915_2030341_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000179061.1|2030731_2031436_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000130145.1|2031472_2033137_-	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	4.7e-45
WP_001791584.1|2033606_2033789_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000136272.1|2034438_2034618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000204271.1|2034866_2036303_-	MarR family transcriptional regulator	NA	A0A088F7M4	Mycobacterium_phage	31.2	5.5e-58
>prophage 143
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2039344	2042953	2883314	transposase	Staphylococcus_phage(33.33%)	3	NA	NA
WP_000586768.1|2039344_2040205_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	7.4e-10
WP_000389651.1|2040201_2041011_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	30.8	1.4e-18
WP_094409958.1|2041386_2042953_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 144
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2066133	2069301	2883314		Leptospira_phage(100.0%)	1	NA	NA
WP_000592290.1|2066133_2069301_-	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	22.0	4.3e-63
>prophage 145
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2081268	2081874	2883314		Pithovirus(100.0%)	1	NA	NA
WP_000913006.1|2081268_2081874_-	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.6	3.8e-13
>prophage 146
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2100847	2101657	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717395.1|2100847_2101657_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.4e-07
>prophage 147
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2105577	2109844	2883314		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000737700.1|2105577_2106069_+	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
WP_000417008.1|2106427_2107381_+	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	29.2	5.8e-32
WP_000684154.1|2107472_2108597_-	NAD(P)-binding protein	NA	A0A2K9L3K5	Tupanvirus	22.8	1.6e-12
WP_072460394.1|2109205_2109844_-	autolysin	NA	A0A1W6JQU5	Staphylococcus_phage	47.4	4.5e-36
>prophage 148
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2122849	2123485	2883314		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285452.1|2122849_2123485_-	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.6	7.1e-10
>prophage 149
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2131364	2132246	2883314		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000730056.1|2131364_2132246_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	1.7e-62
>prophage 150
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2137877	2138297	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_000920241.1|2137877_2138297_+	FosB/FosD family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	7.7e-37
>prophage 151
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2145655	2146555	2883314		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524842.1|2145655_2146555_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	2.7e-15
>prophage 152
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2159211	2160420	2883314		Salmonella_phage(100.0%)	1	NA	NA
WP_000999130.1|2159211_2160420_-	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.5	3.0e-33
>prophage 153
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2164157	2170714	2883314		Planktothrix_phage(25.0%)	8	NA	NA
WP_001229922.1|2164157_2164823_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.3	7.2e-37
WP_000761409.1|2164822_2165878_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000249492.1|2166013_2166688_+	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	44.7	8.0e-52
WP_000477322.1|2166680_2168054_+	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.3	1.1e-12
WP_000977031.1|2168216_2168660_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000793166.1|2168656_2169112_+	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000372857.1|2169288_2169852_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000388431.1|2169985_2170714_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.2	6.7e-28
>prophage 154
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2181177	2182212	2883314		Bacillus_virus(100.0%)	1	NA	NA
WP_000655979.1|2181177_2182212_-	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.2	1.7e-16
>prophage 155
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2193153	2194800	2883314	transposase	Staphylococcus_virus(100.0%)	1	NA	NA
WP_000277741.1|2193153_2194800_-|transposase	IS1182-like element ISSau3 family transposase	transposase	A0ZS58	Staphylococcus_virus	100.0	3.5e-295
>prophage 156
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2205531	2207091	2883314		Escherichia_phage(100.0%)	1	NA	NA
WP_000692650.1|2205531_2207091_-	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	3.4e-21
>prophage 157
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2223955	2224687	2883314		Bacillus_virus(100.0%)	1	NA	NA
WP_000615467.1|2223955_2224687_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.3	1.3e-23
>prophage 158
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2232580	2238334	2883314		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000594516.1|2232580_2233510_+	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.4	1.5e-120
WP_000916697.1|2234059_2235007_+	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	2.1e-138
WP_001056917.1|2235008_2235986_+	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	2.4e-142
WP_000200947.1|2236037_2236505_-	QueT transporter family protein	NA	NA	NA	NA	NA
WP_000286868.1|2236515_2237208_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000971554.1|2237218_2238334_-	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.9	7.1e-21
>prophage 159
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2241795	2248001	2883314		Bacillus_phage(66.67%)	5	NA	NA
WP_000486505.1|2241795_2243529_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	1.5e-30
WP_001064829.1|2243553_2245317_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	1.6e-35
WP_000482647.1|2245963_2246071_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_000779351.1|2246204_2246591_-	GtrA family protein	NA	NA	NA	NA	NA
WP_001176855.1|2246858_2248001_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	43.9	2.6e-55
>prophage 160
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2266377	2267604	2883314		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000948990.1|2266377_2267604_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
>prophage 161
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2270997	2275424	2883314		Pandoravirus(50.0%)	4	NA	NA
WP_000700902.1|2270997_2272350_+	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	3.0e-13
WP_000026190.1|2272411_2273599_-	MFS transporter	NA	NA	NA	NA	NA
WP_000072154.1|2273992_2274769_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_160190061.1|2274761_2275424_-	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	34.5	2.8e-17
>prophage 162
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2281658	2283216	2883314		Bacillus_virus(50.0%)	2	NA	NA
WP_000590515.1|2281658_2282408_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	8.1e-21
WP_000173876.1|2282400_2283216_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	6.1e-14
>prophage 163
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2291281	2292100	2883314		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824929.1|2291281_2292100_-	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	26.8	1.9e-10
>prophage 164
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2297776	2298472	2883314		Bacillus_phage(100.0%)	1	NA	NA
WP_000217452.1|2297776_2298472_-	oxidoreductase	NA	W8CYX9	Bacillus_phage	36.5	5.1e-09
>prophage 165
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2302915	2310091	2883314		Bacillus_phage(66.67%)	6	NA	NA
WP_000088715.1|2302915_2305777_-	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	1.2e-27
WP_000755954.1|2305778_2306171_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_160190064.1|2306287_2308096_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.5	3.0e-93
WP_000678764.1|2308379_2308646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001573690.1|2308789_2309098_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000721330.1|2309224_2310091_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	4.4e-79
>prophage 166
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2328690	2329386	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000382892.1|2328690_2329386_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	2.0e-37
>prophage 167
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2338802	2339795	2883314		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161541.1|2338802_2339795_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	9.7e-38
>prophage 168
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2348619	2355002	2883314		Powai_lake_megavirus(33.33%)	5	NA	NA
WP_001228158.1|2348619_2349588_-	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	3.1e-12
WP_000240663.1|2349708_2350065_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000206033.1|2350106_2350517_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000473682.1|2350896_2352963_-	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_001062662.1|2353262_2355002_-	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
>prophage 169
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2361426	2364416	2883314	protease	Streptococcus_phage(50.0%)	2	NA	NA
WP_000262597.1|2361426_2361948_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	42.3	2.4e-27
WP_001063330.1|2362310_2364416_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.5	6.9e-118
>prophage 170
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2370220	2371788	2883314	transposase	Paenibacillus_phage(100.0%)	1	NA	NA
WP_094409958.1|2370220_2371788_-|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 171
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2375320	2379176	2883314		uncultured_virus(50.0%)	3	NA	NA
WP_000024137.1|2375320_2377729_+	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	2.9e-128
WP_000076662.1|2377881_2378088_+	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000161364.1|2378177_2379176_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	2.6e-35
>prophage 172
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2387615	2390815	2883314		Salmonella_virus(50.0%)	2	NA	NA
WP_000379825.1|2387615_2389427_-	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
WP_000751265.1|2390113_2390815_-	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.8	2.1e-39
>prophage 173
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2418970	2429081	2883314	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000030061.1|2418970_2420308_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	26.7	6.7e-18
WP_001237625.1|2420561_2420978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001031407.1|2421100_2421991_+	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001130051.1|2422183_2423680_-	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001793854.1|2424106_2424307_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001172333.1|2424366_2425965_-	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.6	2.6e-77
WP_001028789.1|2426158_2426602_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_000011688.1|2426881_2427094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000066521.1|2427371_2429081_-|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
>prophage 174
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2433957	2436341	2883314		Enterococcus_phage(100.0%)	2	NA	NA
WP_000173336.1|2433957_2434494_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	47.5	1.1e-40
WP_001071721.1|2434490_2436341_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	63.9	1.3e-234
>prophage 175
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2441391	2441889	2883314		Canarypox_virus(100.0%)	1	NA	NA
WP_001065267.1|2441391_2441889_-	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	2.4e-21
>prophage 176
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2445326	2447077	2883314		Planktothrix_phage(50.0%)	2	NA	NA
WP_000923764.1|2445326_2446082_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	1.8e-31
WP_000143418.1|2446189_2447077_-	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	7.4e-05
>prophage 177
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2472770	2476288	2883314	transposase	Enterococcus_phage(50.0%)	2	NA	NA
WP_001125631.1|2472770_2474630_+	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
WP_094409958.1|2474721_2476288_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
>prophage 178
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2500168	2500861	2883314		Streptococcus_phage(100.0%)	1	NA	NA
WP_000185860.1|2500168_2500861_-	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 179
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2512259	2513273	2883314		Faustovirus(100.0%)	1	NA	NA
WP_000639198.1|2512259_2513273_-	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	22.2	8.2e-08
>prophage 180
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2518901	2520614	2883314		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138663.1|2518901_2520614_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	5.4e-20
>prophage 181
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2537757	2538516	2883314		Planktothrix_phage(100.0%)	1	NA	NA
WP_000154162.1|2537757_2538516_+	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 182
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2544300	2547600	2883314		Lactococcus_phage(33.33%)	5	NA	NA
WP_001059079.1|2544300_2544501_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_001054111.1|2544627_2545197_-	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	34.8	2.8e-05
WP_000779134.1|2545449_2545845_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000491382.1|2545912_2546266_-	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000742840.1|2546760_2547600_-	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.4	1.4e-05
>prophage 183
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2557687	2566723	2883314	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000255583.1|2557687_2559622_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	4.4e-143
WP_000819098.1|2559658_2562319_+	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.8	4.6e-119
WP_000449218.1|2562406_2563219_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000177483.1|2563544_2565059_+	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	4.4e-90
WP_000884337.1|2565436_2566723_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
>prophage 184
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2573405	2583401	2883314		Bacillus_phage(40.0%)	7	NA	NA
WP_000375647.1|2573405_2574806_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
WP_000095328.1|2575083_2576367_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000101976.1|2577556_2578258_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000871610.1|2578270_2580097_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	2.1e-30
WP_001060146.1|2580089_2581424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104171.1|2581424_2582213_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088649.1|2582600_2583401_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
>prophage 185
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2589280	2594615	2883314	transposase	Paenibacillus_phage(33.33%)	5	NA	NA
WP_088356251.1|2589280_2590409_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.0	6.4e-78
WP_000370465.1|2590597_2591113_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000121211.1|2591117_2592065_-|transposase	IS30-like element ISSau1 family transposase	transposase	Q9MBM9	Staphylococcus_prophage	100.0	1.1e-184
WP_001794509.1|2592250_2592625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000649665.1|2592914_2594615_+	AAA domain-containing protein	NA	K4I1H4	Acidithiobacillus_phage	26.8	4.1e-20
>prophage 186
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2626638	2630848	2883314		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000136645.1|2626638_2627637_-	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.2	2.6e-14
WP_000925002.1|2627633_2628629_-	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_001045124.1|2628644_2629637_-	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000570808.1|2629867_2630848_+	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
>prophage 187
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2639114	2644209	2883314		Tupanvirus(50.0%)	5	NA	NA
WP_001223717.1|2639114_2640317_+	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.3	5.1e-09
WP_001015549.1|2640320_2641085_+	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_000414632.1|2641280_2641907_+	MFS transporter	NA	NA	NA	NA	NA
WP_000183771.1|2642117_2642894_+	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_001793810.1|2643228_2644209_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.3	1.3e-47
>prophage 188
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2649143	2649743	2883314		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|2649143_2649743_+	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 189
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2663861	2665037	2883314		Clostridium_phage(100.0%)	1	NA	NA
WP_000469818.1|2663861_2665037_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.9	5.2e-30
>prophage 190
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2668133	2677288	2883314	transposase	Catovirus(40.0%)	8	NA	NA
WP_094409958.1|2668133_2669700_+|transposase	IS3-like element ISSau2 family transposase	transposase	A0A0C5AEA5	Paenibacillus_phage	51.8	1.0e-49
WP_000446302.1|2670039_2670708_+	capsular polysaccharide type 5/8 biosynthesis protein CapA	NA	NA	NA	NA	NA
WP_000037317.1|2670723_2671410_+	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	8.2e-28
WP_000565301.1|2671412_2672177_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000940769.1|2672196_2674020_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.4	3.0e-29
WP_000459062.1|2674009_2675038_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_001028294.1|2675050_2676160_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000413167.1|2676163_2677288_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	3.9e-128
>prophage 191
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2684305	2686790	2883314		Bacillus_phage(50.0%)	2	NA	NA
WP_000779509.1|2684305_2685568_+	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	2.5e-22
WP_000723445.1|2685644_2686790_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	26.4	3.2e-24
>prophage 192
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2690131	2693130	2883314		Indivirus(50.0%)	4	NA	NA
WP_001013476.1|2690131_2691091_+	cation transporter	NA	A0A1V0SED0	Indivirus	33.6	2.8e-10
WP_000356967.1|2691152_2691356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000171926.1|2691535_2692048_+	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000590840.1|2692389_2693130_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.6	6.5e-39
>prophage 193
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2696666	2706950	2883314		Catovirus(50.0%)	3	NA	NA
WP_000706134.1|2696666_2697692_+	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.9	2.9e-29
WP_000826855.1|2698077_2699328_+	MFS transporter	NA	NA	NA	NA	NA
WP_000605273.1|2699774_2706950_+	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.9	3.4e-68
>prophage 194
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2711808	2712993	2883314		Klosneuvirus(100.0%)	1	NA	NA
WP_001084444.1|2711808_2712993_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.6	2.4e-35
>prophage 195
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2738490	2740549	2883314		Pontimonas_phage(50.0%)	2	NA	NA
WP_000166911.1|2738490_2739069_+	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	43.0	1.6e-13
WP_000818914.1|2739451_2740549_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
>prophage 196
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2750860	2756219	2883314		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000127979.1|2750860_2752417_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
WP_000837114.1|2752413_2753382_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000894660.1|2753969_2756219_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
>prophage 197
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2767180	2768686	2883314		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008395.1|2767180_2768686_-	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 198
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2778371	2779901	2883314		Vibrio_phage(100.0%)	1	NA	NA
WP_160190078.1|2778371_2779901_-	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	52.0	5.3e-11
>prophage 199
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2787117	2788161	2883314		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645611.1|2787117_2788161_+	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.6	6.0e-14
>prophage 200
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2798030	2802574	2883314		Catovirus(50.0%)	3	NA	NA
WP_000975347.1|2798030_2799755_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
WP_000608835.1|2799894_2800569_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000925396.1|2800834_2802574_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	2.0e-62
>prophage 201
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2809082	2810519	2883314		Pandoravirus(100.0%)	1	NA	NA
WP_000163995.1|2809082_2810519_+	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	26.0	1.3e-30
>prophage 202
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2819326	2820988	2883314		Arthrobacter_phage(50.0%)	2	NA	NA
WP_000736790.1|2819326_2820277_+	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
WP_000570080.1|2820328_2820988_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.0	5.8e-23
>prophage 203
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2831593	2836042	2883314		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549309.1|2831593_2836042_+	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	23.7	1.7e-28
>prophage 204
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2850094	2850772	2883314		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911024.1|2850094_2850772_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.4	1.2e-31
>prophage 205
NZ_CP047779	Staphylococcus aureus strain UP_1559 chromosome, complete genome	2883314	2864945	2882751	2883314	integrase	Staphylococcus_phage(81.82%)	44	2851846:2851861	2880556:2880571
2851846:2851861	attL	ATTTTTAGTAATGTTT	NA	NA	NA	NA
WP_000264185.1|2864945_2866151_-|integrase	site-specific integrase	integrase	A7YGM7	Staphylococcus_virus	99.8	2.9e-222
WP_000191459.1|2866260_2866875_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001795334.1|2866871_2867018_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	1.2e-16
WP_000705240.1|2867054_2867237_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_031783149.1|2867307_2868078_-	helix-turn-helix domain-containing protein	NA	A0A1X9H0P5	Staphylococcus_phage	95.7	1.7e-135
WP_000338187.1|2868237_2868459_+	DUF739 family protein	NA	A0A1X9H090	Staphylococcus_phage	100.0	7.6e-36
WP_000435345.1|2868482_2868929_+	hypothetical protein	NA	A0A1X9H091	Staphylococcus_phage	99.3	7.3e-78
WP_001156085.1|2868945_2869146_+	hypothetical protein	NA	A7TWL8	Staphylococcus_phage	51.8	2.2e-05
WP_120057019.1|2869129_2869384_-	hypothetical protein	NA	A7TWL9	Staphylococcus_phage	76.0	4.7e-29
WP_001148541.1|2869443_2870220_+	transcriptional regulator	NA	A0A2D1G5J2	Staphylococcus_phage	87.2	2.2e-122
WP_020807997.1|2870233_2870449_+	hypothetical protein	NA	Q4ZCA9	Staphylococcus_virus	58.6	6.7e-13
WP_160190082.1|2870501_2870642_+	hypothetical protein	NA	A0A2I6PDT8	Staphylococcus_phage	97.8	3.2e-16
WP_000772137.1|2870634_2870844_-	hypothetical protein	NA	A0A2I6PDR8	Staphylococcus_phage	100.0	9.1e-31
WP_031872352.1|2870899_2871226_+	hypothetical protein	NA	G4KNN2	Staphylococcus_phage	99.1	1.2e-53
WP_001037095.1|2871222_2871441_+	hypothetical protein	NA	A0A2I6PDV4	Staphylococcus_phage	100.0	5.0e-32
WP_001124198.1|2871470_2871734_+	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_000066011.1|2871745_2871907_+	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000829610.1|2871995_2872313_+	hypothetical protein	NA	A0A2I6PEL3	Staphylococcus_phage	100.0	3.9e-33
WP_001556704.1|2872317_2872578_+	DUF1108 family protein	NA	G4KNN5	Staphylococcus_phage	100.0	2.0e-43
WP_000002516.1|2872593_2873073_+	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_001288245.1|2873072_2873846_+	AAA family ATPase	NA	A0A0H4ITW3	Staphylococcus_phage	100.0	1.6e-141
WP_078096758.1|2873930_2874431_+	single-stranded DNA-binding protein	NA	A7TWM8	Staphylococcus_phage	98.8	6.1e-89
WP_001199416.1|2874443_2875115_+	hypothetical protein	NA	Q8SDM2	Staphylococcus_phage	100.0	4.4e-127
WP_000414755.1|2875253_2875535_-	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_160190083.1|2875601_2876378_+	replication protein	NA	Q4ZDQ6	Staphylococcus_virus	99.2	1.6e-120
WP_029265078.1|2876387_2877167_+	ATP-binding protein	NA	W5RAN3	Staphylococcus_phage	99.2	1.0e-143
WP_142378871.1|2877335_2877482_+	DUF3269 family protein	NA	A0A0N9BAW8	Staphylococcus_phage	100.0	3.8e-20
WP_160190084.1|2877566_2877953_+	DUF1064 domain-containing protein	NA	A0A2I6PDA8	Staphylococcus_phage	99.2	4.1e-69
WP_042857172.1|2877957_2878143_+	DUF3113 family protein	NA	Q8SDV9	Staphylococcus_phage	98.4	3.5e-26
WP_000772916.1|2878143_2878401_+	helix-turn-helix transcriptional regulator	NA	Q4ZBU1	Staphylococcus_virus	100.0	4.1e-41
WP_050961865.1|2878412_2878772_+	hypothetical protein	NA	Q8SDV7	Staphylococcus_phage	96.6	1.5e-60
WP_001126836.1|2878772_2879021_+	hypothetical protein	NA	A0A2I6PDI0	Staphylococcus_phage	100.0	3.2e-43
WP_061389043.1|2879029_2879437_+	hypothetical protein	NA	A0ZS31	Staphylococcus_virus	94.3	1.8e-59
WP_001614120.1|2879393_2879648_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	97.6	5.5e-38
WP_078059846.1|2879610_2879805_+	hypothetical protein	NA	M1SVE4	Staphylococcus_phage	98.4	1.4e-25
WP_000185690.1|2879797_2880334_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	99.4	4.6e-95
WP_001282074.1|2880370_2880616_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
2880556:2880571	attR	ATTTTTAGTAATGTTT	NA	NA	NA	NA
WP_000195782.1|2880612_2880801_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001125015.1|2880775_2880976_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000501856.1|2880963_2881128_+	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	100.0	3.9e-21
WP_000265041.1|2881127_2881328_+	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	100.0	1.1e-28
WP_160190085.1|2881350_2881812_+	hypothetical protein	NA	R9QT84	Staphylococcus_phage	98.7	3.3e-73
WP_000406186.1|2881926_2882379_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	88.0	3.3e-70
WP_000026170.1|2882385_2882751_+	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	72.7	1.5e-49
