assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	1	786539-786679	1,1	CRISPRCasFinder,PILER-CR	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AGTTGGGGTGGGCCCCAACACAGA,AGTTGGGGCGGGCCCCAACACAGAGAAT	24,28	2	18	786563-786594|786563-786594|786563-786594|786563-786594|786563-786594|786563-786594|786563-786594|786563-786594|786563-786594|786576-786603|786576-786603|786576-786603|786576-786603|786576-786603|786576-786603|786576-786603|786576-786603|786576-786603	NZ_CP047792.1_462441-462410|NZ_CP047792.1_475674-475643|NZ_CP047792.1_475732-475701|NZ_CP047792.1_686883-686852|NZ_CP047792.1_998893-998924|NZ_CP047792.1_41168-41199|NZ_CP047792.1_470354-470323|NZ_CP047792.1_589357-589326|NZ_CP047792.1_1382426-1382457|NZ_CP047792.1_462437-462410|NZ_CP047792.1_475670-475643|NZ_CP047792.1_475728-475701|NZ_CP047792.1_686879-686852|NZ_CP047792.1_998897-998924|NZ_CP047792.1_41172-41199|NZ_CP047792.1_470350-470323|NZ_CP047792.1_589353-589326|NZ_CP047792.1_1382430-1382457	NA:NA	2,2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|31aa|up_9|NZ_CP047792.1_779843_779936_-,NA|169aa|up_7|NZ_CP047792.1_780971_781478_+,NA|62aa|up_4|NZ_CP047792.1_782981_783167_-,NA|78aa|up_3|NZ_CP047792.1_783774_784008_-,NA|49aa|up_1|NZ_CP047792.1_786094_786241_+,NA|67aa|up_0|NZ_CP047792.1_786224_786425_+,NA|76aa|down_6|NZ_CP047792.1_793639_793867_+	NA|31aa|up_9|NZ_CP047792.1_779843_779936_-	NA	NA|134aa|up_8|NZ_CP047792.1_779895_780297_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP047792.1_780971_781478_+	NA	NA|166aa|up_6|NZ_CP047792.1_781735_782233_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP047792.1_782384_782735_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP047792.1_782981_783167_-	NA	NA|78aa|up_3|NZ_CP047792.1_783774_784008_-	NA	NA|320aa|up_2|NZ_CP047792.1_784463_785423_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP047792.1_786094_786241_+	NA	NA|67aa|up_0|NZ_CP047792.1_786224_786425_+	NA	NA|239aa|down_0|NZ_CP047792.1_786824_787541_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP047792.1_787649_788375_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP047792.1_788484_789210_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP047792.1_789647_790649_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP047792.1_790671_791604_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|NZ_CP047792.1_791825_793331_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP047792.1_793639_793867_+	NA	NA|316aa|down_7|NZ_CP047792.1_794182_795130_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP047792.1_795376_795565_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP047792.1_796458_796593_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	2	858889-858982	2	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TAAGAAACAGTAATCAATAAATTGATAACT	30	0	0	NA	NA	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|215aa|up_9|NZ_CP047792.1_848764_849409_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|214aa|up_8|NZ_CP047792.1_849415_850057_+	COG1564, THI80, Thiamine pyrophosphokinase [Coenzyme metabolism]	NA|63aa|up_7|NZ_CP047792.1_850437_850626_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|125aa|up_6|NZ_CP047792.1_851068_851443_+	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|549aa|up_5|NZ_CP047792.1_851457_853104_+	COG1461, COG1461, Predicted kinase related to dihydroxyacetone kinase [General function prediction only]	cas3|687aa|up_4|NZ_CP047792.1_853292_855353_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|191aa|up_3|NZ_CP047792.1_855555_856128_+	PRK04424, PRK04424, transcription factor FapR	NA|329aa|up_2|NZ_CP047792.1_856132_857119_+	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|309aa|up_1|NZ_CP047792.1_857111_858038_+	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|245aa|up_0|NZ_CP047792.1_858030_858765_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|78aa|down_0|NZ_CP047792.1_859071_859305_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|244aa|down_1|NZ_CP047792.1_859420_860152_+	PRK00102, rnc, ribonuclease III; Reviewed	NA|1189aa|down_2|NZ_CP047792.1_860298_863865_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|417aa|down_3|NZ_CP047792.1_863864_865115_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|111aa|down_4|NZ_CP047792.1_865101_865434_+	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|456aa|down_5|NZ_CP047792.1_865459_866827_+	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|92aa|down_6|NZ_CP047792.1_867261_867537_+	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|168aa|down_7|NZ_CP047792.1_867724_868228_+	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|246aa|down_8|NZ_CP047792.1_868227_868965_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|117aa|down_9|NZ_CP047792.1_869067_869418_+	PRK05338, rplS, 50S ribosomal protein L19; Provisional
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	3	1261054-1261140	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTCTGTGTTGGGGCCCACACCCCAACT	29	1	3	1261083-1261111|1261083-1261111|1261083-1261111	NZ_CP047792.1_475585-475613|NZ_CP047792.1_522966-522938|NZ_CP047792.1_998866-998838	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|228aa|up_9|NZ_CP047792.1_1250227_1250911_-	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]	NA|59aa|up_8|NZ_CP047792.1_1251154_1251331_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|449aa|up_7|NZ_CP047792.1_1251623_1252970_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|251aa|up_6|NZ_CP047792.1_1252976_1253729_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|313aa|up_5|NZ_CP047792.1_1253730_1254669_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|380aa|up_4|NZ_CP047792.1_1254672_1255812_-	PRK14280, PRK14280, molecular chaperone DnaJ	NA|611aa|up_3|NZ_CP047792.1_1255947_1257780_-	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|209aa|up_2|NZ_CP047792.1_1257848_1258475_-	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|326aa|up_1|NZ_CP047792.1_1258506_1259484_-	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|375aa|up_0|NZ_CP047792.1_1259583_1260708_-	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|608aa|down_0|NZ_CP047792.1_1261327_1263151_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|84aa|down_1|NZ_CP047792.1_1263496_1263748_+	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|325aa|down_2|NZ_CP047792.1_1263792_1264767_-	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|716aa|down_3|NZ_CP047792.1_1264823_1266971_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|154aa|down_4|NZ_CP047792.1_1267029_1267491_-	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|229aa|down_5|NZ_CP047792.1_1267582_1268269_-	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|239aa|down_6|NZ_CP047792.1_1268308_1269025_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|118aa|down_7|NZ_CP047792.1_1269027_1269381_-	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|195aa|down_8|NZ_CP047792.1_1269381_1269966_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|190aa|down_9|NZ_CP047792.1_1269955_1270525_-	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	4	1295082-1295270	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCCGCCA	20	2	3	1295102-1295137|1295158-1295195|1295158-1295195	NZ_CP047792.1_1295046-1295081|NZ_CP047792.1_475579-475616|NZ_CP047792.1_998872-998835	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|49aa|down_3|NZ_CP047792.1_1299223_1299370_-,NA|43aa|down_8|NZ_CP047792.1_1302406_1302535_-	NA|208aa|up_9|NZ_CP047792.1_1283820_1284444_-	PRK05480, PRK05480, uridine/cytidine kinase; Provisional	NA|423aa|up_8|NZ_CP047792.1_1284443_1285712_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|308aa|up_7|NZ_CP047792.1_1285723_1286647_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|213aa|up_6|NZ_CP047792.1_1286649_1287288_-	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|103aa|up_5|NZ_CP047792.1_1287572_1287881_-	PRK13678, PRK13678, hypothetical protein; Provisional	NA|143aa|up_4|NZ_CP047792.1_1287895_1288324_-	COG0816, COG0816, Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B	NA|87aa|up_3|NZ_CP047792.1_1288327_1288588_-	PRK05473, IreB-like, IreB family regulatory phosphoprotein	NA|877aa|up_2|NZ_CP047792.1_1288650_1291281_-	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|826aa|up_1|NZ_CP047792.1_1291622_1294100_-	TIGR01448, recD_rel, helicase, putative, RecD/TraA family	NA|223aa|up_0|NZ_CP047792.1_1294101_1294770_-	sd00006, TPR, Tetratricopeptide repeat	NA|373aa|down_0|NZ_CP047792.1_1295400_1296519_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|381aa|down_1|NZ_CP047792.1_1296519_1297662_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|338aa|down_2|NZ_CP047792.1_1297973_1298987_+	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1	NA|49aa|down_3|NZ_CP047792.1_1299223_1299370_-	NA	NA|61aa|down_4|NZ_CP047792.1_1299409_1299592_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|141aa|down_5|NZ_CP047792.1_1299691_1300114_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|425aa|down_6|NZ_CP047792.1_1300198_1301473_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|258aa|down_7|NZ_CP047792.1_1301633_1302407_-	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]	NA|43aa|down_8|NZ_CP047792.1_1302406_1302535_-	NA	NA|589aa|down_9|NZ_CP047792.1_1302867_1304634_-	PRK00476, aspS, aspartyl-tRNA synthetase; Validated
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	5	1382442-1382527	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGACAATGCAAGTTGGGGTGGG	28	1	8	1382470-1382499|1382470-1382499|1382470-1382499|1382470-1382499|1382470-1382499|1382470-1382499|1382470-1382499|1382470-1382499	NZ_CP047792.1_1261069-1261040|NZ_CP047792.1_1710979-1710950|NZ_CP047792.1_1792821-1792792|NZ_CP047792.1_2396060-2396031|NZ_CP047792.1_73169-73198|NZ_CP047792.1_523093-523122|NZ_CP047792.1_1737911-1737940|NZ_CP047792.1_2540541-2540570	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|423aa|up_9|NZ_CP047792.1_1366834_1368103_-	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed	NA|374aa|up_8|NZ_CP047792.1_1368151_1369273_-	PRK14035, PRK14035, citrate synthase; Provisional	NA|454aa|up_7|NZ_CP047792.1_1369620_1370982_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_6|NZ_CP047792.1_1371330_1373088_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_5|NZ_CP047792.1_1373109_1374078_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_4|NZ_CP047792.1_1374346_1375291_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_3|NZ_CP047792.1_1375290_1376148_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_2|NZ_CP047792.1_1376342_1377572_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_1|NZ_CP047792.1_1378021_1381219_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_0|NZ_CP047792.1_1381239_1382181_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|down_0|NZ_CP047792.1_1382578_1383877_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|down_1|NZ_CP047792.1_1384081_1384495_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_2|NZ_CP047792.1_1384941_1385631_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_3|NZ_CP047792.1_1385805_1386861_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_4|NZ_CP047792.1_1387176_1388295_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_5|NZ_CP047792.1_1388435_1388936_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_6|NZ_CP047792.1_1389181_1390384_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_7|NZ_CP047792.1_1390471_1391419_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_8|NZ_CP047792.1_1391541_1392036_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_9|NZ_CP047792.1_1392133_1392904_-	PRK10621, PRK10621, hypothetical protein; Provisional
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	6	1384736-1384819	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGCAAGTTGGGCTGGGACCCCAACATG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|454aa|up_9|NZ_CP047792.1_1369620_1370982_+	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|586aa|up_8|NZ_CP047792.1_1371330_1373088_-	PRK06354, PRK06354, pyruvate kinase; Provisional	NA|323aa|up_7|NZ_CP047792.1_1373109_1374078_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|315aa|up_6|NZ_CP047792.1_1374346_1375291_-	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated	NA|286aa|up_5|NZ_CP047792.1_1375290_1376148_-	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta	NA|410aa|up_4|NZ_CP047792.1_1376342_1377572_-	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed	NA|1066aa|up_3|NZ_CP047792.1_1378021_1381219_-	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	NA|314aa|up_2|NZ_CP047792.1_1381239_1382181_-	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only]	NA|433aa|up_1|NZ_CP047792.1_1382578_1383877_-	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription]	NA|138aa|up_0|NZ_CP047792.1_1384081_1384495_+	pfam00582, Usp, Universal stress protein family	NA|230aa|down_0|NZ_CP047792.1_1384941_1385631_-	PRK00685, PRK00685, metal-dependent hydrolase; Provisional	NA|352aa|down_1|NZ_CP047792.1_1385805_1386861_+	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism]	NA|373aa|down_2|NZ_CP047792.1_1387176_1388295_-	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains	NA|167aa|down_3|NZ_CP047792.1_1388435_1388936_+	pfam00582, Usp, Universal stress protein family	NA|401aa|down_4|NZ_CP047792.1_1389181_1390384_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|316aa|down_5|NZ_CP047792.1_1390471_1391419_-	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|165aa|down_6|NZ_CP047792.1_1391541_1392036_-	PRK00522, tpx, thiol peroxidase	NA|257aa|down_7|NZ_CP047792.1_1392133_1392904_-	PRK10621, PRK10621, hypothetical protein; Provisional	NA|408aa|down_8|NZ_CP047792.1_1392947_1394171_-	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|383aa|down_9|NZ_CP047792.1_1394170_1395319_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	7	1961776-1961862	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGTTCCCCAACTTGCAT	28	1	1	1961804-1961834	NZ_CP047792.1_41194-41164	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP047792.1_1952300_1952465_+,NA|106aa|up_8|NZ_CP047792.1_1952709_1953027_+,NA|84aa|up_5|NZ_CP047792.1_1958151_1958403_+,NA|57aa|up_0|NZ_CP047792.1_1961544_1961715_+,NA	NA|55aa|up_9|NZ_CP047792.1_1952300_1952465_+	NA	NA|106aa|up_8|NZ_CP047792.1_1952709_1953027_+	NA	NA|1056aa|up_7|NZ_CP047792.1_1953213_1956381_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP047792.1_1956497_1957763_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP047792.1_1958151_1958403_+	NA	NA|255aa|up_4|NZ_CP047792.1_1958394_1959159_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP047792.1_1959322_1959763_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP047792.1_1959755_1960967_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP047792.1_1961068_1961419_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP047792.1_1961544_1961715_+	NA	NA|341aa|down_0|NZ_CP047792.1_1962058_1963081_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP047792.1_1963100_1963700_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP047792.1_1963706_1963940_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP047792.1_1963945_1964392_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP047792.1_1964405_1964891_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP047792.1_1964887_1966147_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP047792.1_1966209_1966704_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP047792.1_1966705_1967212_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP047792.1_1967242_1968247_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP047792.1_1968415_1969021_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	8	2099488-2099571	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGGCCCCAACACAGAAGCTGGCGGAAAG	28	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|61aa|down_1|NZ_CP047792.1_2100692_2100875_-	NA|151aa|up_9|NZ_CP047792.1_2086687_2087140_-	pfam01590, GAF, GAF domain	NA|226aa|up_8|NZ_CP047792.1_2087159_2087837_-	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|197aa|up_7|NZ_CP047792.1_2087829_2088420_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|520aa|up_6|NZ_CP047792.1_2088397_2089957_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1230aa|up_5|NZ_CP047792.1_2089946_2093636_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|326aa|up_4|NZ_CP047792.1_2093944_2094922_-	TIGR01469, Uroporphyrinogen-III_C-methyltransferase, uroporphyrin-III C-methyltransferase	NA|105aa|up_3|NZ_CP047792.1_2094912_2095227_-	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain	NA|802aa|up_2|NZ_CP047792.1_2095230_2097636_-	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]	NA|256aa|up_1|NZ_CP047792.1_2097663_2098431_-	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism]	NA|179aa|up_0|NZ_CP047792.1_2098659_2099196_-	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|275aa|down_0|NZ_CP047792.1_2099665_2100490_-	COG2116, FocA, Formate/nitrite family of transporters [Inorganic ion transport and metabolism]	NA|61aa|down_1|NZ_CP047792.1_2100692_2100875_-	NA	NA|156aa|down_2|NZ_CP047792.1_2100961_2101429_-	COG3832, COG3832, Uncharacterized conserved protein [Function unknown]	NA|516aa|down_3|NZ_CP047792.1_2101614_2103162_-	pfam09223, ZinT, ZinT (YodA) periplasmic lipocalin-like zinc-recruitment	NA|89aa|down_4|NZ_CP047792.1_2103454_2103721_-	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system	NA|84aa|down_5|NZ_CP047792.1_2103720_2103972_-	COG2161, StbD, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning]	NA|200aa|down_6|NZ_CP047792.1_2104242_2104842_-	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]	NA|120aa|down_7|NZ_CP047792.1_2104860_2105220_-	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|417aa|down_8|NZ_CP047792.1_2105474_2106725_+	pfam02388, FemAB, FemAB family	NA|244aa|down_9|NZ_CP047792.1_2106821_2107553_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
GCF_009912115.1_ASM991211v1	NZ_CP047792	Staphylococcus aureus strain UP_794 chromosome, complete genome	9	2683026-2683109	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AGAGAAATTGGAACAGCAATTTCTACAG	28	1	3	2683054-2683081|2683054-2683081|2683054-2683081	NZ_CP047792.1_1261031-1261004|NZ_CP047792.1_1611555-1611528|NZ_CP047792.1_1611725-1611698	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_1|NZ_CP047792.1_2684150_2684285_+	NA|342aa|up_9|NZ_CP047792.1_2670377_2671403_+	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase	NA|563aa|up_8|NZ_CP047792.1_2671424_2673113_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_7|NZ_CP047792.1_2673145_2674867_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_6|NZ_CP047792.1_2675010_2675685_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_5|NZ_CP047792.1_2675945_2677685_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_4|NZ_CP047792.1_2677687_2678428_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_3|NZ_CP047792.1_2678540_2678984_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_2|NZ_CP047792.1_2678976_2679678_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_1|NZ_CP047792.1_2679785_2680490_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_0|NZ_CP047792.1_2680636_2681428_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|254aa|down_0|NZ_CP047792.1_2683370_2684132_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|45aa|down_1|NZ_CP047792.1_2684150_2684285_+	NA	NA|305aa|down_2|NZ_CP047792.1_2684381_2685296_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_3|NZ_CP047792.1_2685323_2685728_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_4|NZ_CP047792.1_2685742_2686624_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_5|NZ_CP047792.1_2686855_2687854_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|459aa|down_6|NZ_CP047792.1_2688337_2689714_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_7|NZ_CP047792.1_2689947_2690940_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_8|NZ_CP047792.1_2691253_2692204_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|220aa|down_9|NZ_CP047792.1_2692255_2692915_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]
