assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	1	260000-260085	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|45aa|down_1|NZ_CP047784.1_261117_261252_+,NA|131aa|down_6|NZ_CP047784.1_265202_265595_+	NA|563aa|up_9|NZ_CP047784.1_248388_250077_+	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase	NA|574aa|up_8|NZ_CP047784.1_250109_251831_+	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1	NA|225aa|up_7|NZ_CP047784.1_251974_252649_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|580aa|up_6|NZ_CP047784.1_252907_254647_+	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]	NA|247aa|up_5|NZ_CP047784.1_254649_255390_+	PRK14084, PRK14084, DNA-binding response regulator	NA|148aa|up_4|NZ_CP047784.1_255502_255946_+	PRK04125, PRK04125, antiholin-like protein LrgA	NA|234aa|up_3|NZ_CP047784.1_255938_256640_+	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional	NA|235aa|up_2|NZ_CP047784.1_256747_257452_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|264aa|up_1|NZ_CP047784.1_257600_258392_+	COG2190, NagE, Phosphotransferase system IIA components [Carbohydrate transport and metabolism]	NA|479aa|up_0|NZ_CP047784.1_258407_259844_+	PRK09589, celA, 6-phospho-beta-glucosidase; Reviewed	NA|254aa|down_0|NZ_CP047784.1_260337_261099_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|45aa|down_1|NZ_CP047784.1_261117_261252_+	NA	NA|305aa|down_2|NZ_CP047784.1_261349_262264_-	TIGR02152, Putative_ribokinase, ribokinase	NA|135aa|down_3|NZ_CP047784.1_262291_262696_-	PRK11797, PRK11797, D-ribose pyranase; Provisional	NA|294aa|down_4|NZ_CP047784.1_262710_263592_-	pfam06800, Sugar_transport, Sugar transport protein	NA|333aa|down_5|NZ_CP047784.1_263823_264822_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|131aa|down_6|NZ_CP047784.1_265202_265595_+	NA	NA|459aa|down_7|NZ_CP047784.1_265722_267099_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|331aa|down_8|NZ_CP047784.1_267332_268325_+	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]	NA|317aa|down_9|NZ_CP047784.1_268650_269601_+	pfam01551, Peptidase_M23, Peptidase family M23
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2	620777-620864	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAAGAAATTCTACAGGCAATGCAAGTTGG	30	1	1	620807-620834	NZ_CP047784.1_1902381-1902354	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|87aa|up_2|NZ_CP047784.1_618506_618767_+,NA	NA|209aa|up_9|NZ_CP047784.1_612449_613076_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|207aa|up_8|NZ_CP047784.1_613262_613883_+	TIGR01218, conserved_hypothetical_protein, tandem five-transmembrane protein	NA|209aa|up_7|NZ_CP047784.1_613957_614584_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|214aa|up_6|NZ_CP047784.1_614708_615350_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|210aa|up_5|NZ_CP047784.1_615396_616026_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|210aa|up_4|NZ_CP047784.1_616490_617120_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|212aa|up_3|NZ_CP047784.1_617920_618556_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|87aa|up_2|NZ_CP047784.1_618506_618767_+	NA	NA|209aa|up_1|NZ_CP047784.1_618790_619417_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_0|NZ_CP047784.1_619686_620625_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|down_0|NZ_CP047784.1_621125_621662_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|down_1|NZ_CP047784.1_621830_622307_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|down_2|NZ_CP047784.1_622346_623642_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|down_3|NZ_CP047784.1_623669_624191_+	pfam08741, YwhD, YwhD family	NA|337aa|down_4|NZ_CP047784.1_624689_625700_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|128aa|down_5|NZ_CP047784.1_626008_626392_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|down_6|NZ_CP047784.1_626388_628050_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|down_7|NZ_CP047784.1_628385_629021_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_8|NZ_CP047784.1_629391_630219_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_9|NZ_CP047784.1_630366_631317_+	pfam01032, FecCD, FecCD transport family
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	3	791715-791805	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	18	791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772|791748-791772	NZ_CP047784.1_141641-141617|NZ_CP047784.1_141698-141674|NZ_CP047784.1_259960-259936|NZ_CP047784.1_620793-620769|NZ_CP047784.1_1311808-1311784|NZ_CP047784.1_2414014-2413990|NZ_CP047784.1_2532866-2532842|NZ_CP047784.1_743925-743949|NZ_CP047784.1_786311-786335|NZ_CP047784.1_835132-835156|NZ_CP047784.1_1002299-1002323|NZ_CP047784.1_1028932-1028956|NZ_CP047784.1_1579963-1579987|NZ_CP047784.1_1903738-1903762|NZ_CP047784.1_2201911-2201935|NZ_CP047784.1_903833-903857|NZ_CP047784.1_1612449-1612473|NZ_CP047784.1_1612682-1612706	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP047784.1_778928_779768_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP047784.1_779941_780592_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP047784.1_780588_780825_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP047784.1_781093_783079_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP047784.1_783086_785933_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP047784.1_786594_787527_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP047784.1_787532_788372_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP047784.1_788379_788865_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP047784.1_788872_790312_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP047784.1_790378_791314_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP047784.1_792081_792993_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP047784.1_792989_793985_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP047784.1_794095_795040_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP047784.1_795612_796200_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP047784.1_796442_797345_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP047784.1_798047_798677_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP047784.1_799438_800452_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP047784.1_800504_801515_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP047784.1_801653_802844_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP047784.1_802965_803727_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	4	798926-799012	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTATGTTGGGGCCCACACCCCAACTTGCA	29	1	21	798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983|798955-798983	NZ_CP047784.1_141644-141616|NZ_CP047784.1_141701-141673|NZ_CP047784.1_259963-259935|NZ_CP047784.1_620796-620768|NZ_CP047784.1_743922-743950|NZ_CP047784.1_786308-786336|NZ_CP047784.1_835129-835157|NZ_CP047784.1_1002296-1002324|NZ_CP047784.1_1028929-1028957|NZ_CP047784.1_1311811-1311783|NZ_CP047784.1_1579960-1579988|NZ_CP047784.1_1903735-1903763|NZ_CP047784.1_2201908-2201936|NZ_CP047784.1_2414017-2413989|NZ_CP047784.1_2532869-2532841|NZ_CP047784.1_835455-835483|NZ_CP047784.1_903830-903858|NZ_CP047784.1_1612446-1612474|NZ_CP047784.1_1612679-1612707|NZ_CP047784.1_1757236-1757208|NZ_CP047784.1_1913084-1913112	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA|153aa|down_6|NZ_CP047784.1_807019_807478_+	NA|280aa|up_9|NZ_CP047784.1_787532_788372_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP047784.1_788379_788865_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP047784.1_788872_790312_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP047784.1_790378_791314_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP047784.1_792081_792993_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP047784.1_792989_793985_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP047784.1_794095_795040_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP047784.1_795612_796200_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP047784.1_796442_797345_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP047784.1_798047_798677_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP047784.1_799438_800452_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP047784.1_800504_801515_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP047784.1_801653_802844_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP047784.1_802965_803727_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP047784.1_803729_805247_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP047784.1_805376_806681_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP047784.1_807019_807478_+	NA	NA|78aa|down_7|NZ_CP047784.1_807544_807778_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP047784.1_807893_808634_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP047784.1_808667_811040_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	5	835059-835140	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	835083-835116	NZ_CP047784.1_1311916-1311883	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP047784.1_833961_834075_+,NA	NA|206aa|up_9|NZ_CP047784.1_828816_829434_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP047784.1_829588_830083_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP047784.1_830481_830904_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP047784.1_831051_831768_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP047784.1_831850_832390_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP047784.1_832539_832860_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP047784.1_833003_833360_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP047784.1_833517_833898_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP047784.1_833961_834075_+	NA	NA|293aa|up_0|NZ_CP047784.1_834076_834955_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP047784.1_835752_836139_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP047784.1_836131_836428_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP047784.1_836677_837703_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP047784.1_837695_838391_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP047784.1_838408_839230_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP047784.1_839618_839813_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP047784.1_840046_840898_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP047784.1_841225_841987_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP047784.1_842084_843392_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP047784.1_843506_844748_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	6	884220-884306	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GAAAGTCAGCTTACAATAGTGTGCAAGTTGG	31	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP047784.1_873110_874607_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP047784.1_874599_874929_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP047784.1_874940_875369_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP047784.1_875361_877767_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP047784.1_877897_878281_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP047784.1_878344_878938_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP047784.1_879352_879730_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP047784.1_880091_881219_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP047784.1_881526_882717_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP047784.1_882825_884070_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP047784.1_884520_885450_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP047784.1_885691_887071_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP047784.1_887060_888266_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP047784.1_888615_889947_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP047784.1_890271_890847_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP047784.1_890851_891376_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP047784.1_891391_891967_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP047784.1_892126_895603_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP047784.1_895603_899257_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP047784.1_899422_900325_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	7	1103499-1103584	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	4	1103529-1103554|1103529-1103554|1103529-1103554|1103529-1103554	NZ_CP047784.1_259974-259999|NZ_CP047784.1_754624-754649|NZ_CP047784.1_884195-884220|NZ_CP047784.1_2647381-2647356	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|27aa|up_9|NZ_CP047784.1_1096358_1096439_-,NA|169aa|up_7|NZ_CP047784.1_1097476_1097983_+,NA|62aa|up_4|NZ_CP047784.1_1099839_1100025_-,NA|78aa|up_3|NZ_CP047784.1_1100646_1100880_-,NA|49aa|up_1|NZ_CP047784.1_1102988_1103135_+,NA|75aa|up_0|NZ_CP047784.1_1103091_1103316_+,NA|76aa|down_5|NZ_CP047784.1_1110613_1110841_+	NA|27aa|up_9|NZ_CP047784.1_1096358_1096439_-	NA	NA|132aa|up_8|NZ_CP047784.1_1096410_1096806_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_7|NZ_CP047784.1_1097476_1097983_+	NA	NA|166aa|up_6|NZ_CP047784.1_1098241_1098739_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_5|NZ_CP047784.1_1098892_1099243_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_4|NZ_CP047784.1_1099839_1100025_-	NA	NA|78aa|up_3|NZ_CP047784.1_1100646_1100880_-	NA	NA|320aa|up_2|NZ_CP047784.1_1101356_1102316_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP047784.1_1102988_1103135_+	NA	NA|75aa|up_0|NZ_CP047784.1_1103091_1103316_+	NA	NA|242aa|down_0|NZ_CP047784.1_1104639_1105365_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP047784.1_1105459_1106185_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_2|NZ_CP047784.1_1106622_1107624_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_3|NZ_CP047784.1_1107646_1108579_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_4|NZ_CP047784.1_1108801_1110307_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_5|NZ_CP047784.1_1110613_1110841_+	NA	NA|316aa|down_6|NZ_CP047784.1_1111146_1112094_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_7|NZ_CP047784.1_1112342_1112531_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_8|NZ_CP047784.1_1113436_1113571_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|down_9|NZ_CP047784.1_1113627_1113762_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	8	1868155-1868287	8	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTGCACCTATACCTCATTCC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_7|NZ_CP047784.1_1860037_1860433_-,NA|51aa|up_6|NZ_CP047784.1_1861310_1861463_-,NA|31aa|down_5|NZ_CP047784.1_1881072_1881165_-	NA|274aa|up_9|NZ_CP047784.1_1857173_1857995_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP047784.1_1858456_1859842_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP047784.1_1860037_1860433_-	NA	NA|51aa|up_6|NZ_CP047784.1_1861310_1861463_-	NA	NA|200aa|up_5|NZ_CP047784.1_1861487_1862087_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP047784.1_1862245_1862716_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP047784.1_1862720_1863863_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP047784.1_1863998_1864727_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP047784.1_1864713_1866171_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP047784.1_1866428_1867490_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP047784.1_1876271_1876718_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP047784.1_1876814_1877765_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP047784.1_1877770_1878226_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP047784.1_1878306_1879596_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP047784.1_1879888_1880983_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|NZ_CP047784.1_1881072_1881165_-	NA	NA|579aa|down_6|NZ_CP047784.1_1881173_1882910_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|NZ_CP047784.1_1883200_1883743_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|NZ_CP047784.1_1884045_1885083_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NZ_CP047784.1_1885234_1886212_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	9	2104805-2104890	9	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|364aa|up_9|NZ_CP047784.1_2091573_2092665_+,NA|35aa|up_8|NZ_CP047784.1_2093163_2093268_-,NA|53aa|up_7|NZ_CP047784.1_2093947_2094106_+,NA	NA|364aa|up_9|NZ_CP047784.1_2091573_2092665_+	NA	NA|35aa|up_8|NZ_CP047784.1_2093163_2093268_-	NA	NA|53aa|up_7|NZ_CP047784.1_2093947_2094106_+	NA	NA|286aa|up_6|NZ_CP047784.1_2094763_2095621_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP047784.1_2095688_2096471_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP047784.1_2096702_2098508_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|423aa|up_3|NZ_CP047784.1_2099188_2100457_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP047784.1_2100497_2102630_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP047784.1_2102641_2103076_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP047784.1_2103075_2104182_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP047784.1_2112294_2113650_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP047784.1_2113676_2114609_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP047784.1_2114610_2115420_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP047784.1_2115608_2116517_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP047784.1_2122711_2123776_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP047784.1_2123923_2125366_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP047784.1_2125688_2126162_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP047784.1_2126260_2127604_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP047784.1_2127782_2128466_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP047784.1_2128484_2129672_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
GCF_009912095.1_ASM991209v1	NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	10	2532858-2532939	10	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	3	2532882-2532915|2532882-2532915|2532882-2532915	NZ_CP047784.1_1311883-1311916|NZ_CP047784.1_141714-141747|NZ_CP047784.1_1002282-1002249	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|163aa|up_8|NZ_CP047784.1_2523859_2524348_-,NA|43aa|up_3|NZ_CP047784.1_2530639_2530768_-,NA|167aa|up_1|NZ_CP047784.1_2531689_2532190_+,NA	NA|498aa|up_9|NZ_CP047784.1_2522373_2523867_-	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|163aa|up_8|NZ_CP047784.1_2523859_2524348_-	NA	NA|256aa|up_7|NZ_CP047784.1_2524522_2525290_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|up_6|NZ_CP047784.1_2525650_2527462_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|234aa|up_5|NZ_CP047784.1_2528148_2528850_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_4|NZ_CP047784.1_2529457_2530513_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|43aa|up_3|NZ_CP047784.1_2530639_2530768_-	NA	NA|190aa|up_2|NZ_CP047784.1_2530922_2531492_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|167aa|up_1|NZ_CP047784.1_2531689_2532190_+	NA	NA|77aa|up_0|NZ_CP047784.1_2532409_2532640_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_0|NZ_CP047784.1_2533044_2533422_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|274aa|down_1|NZ_CP047784.1_2533438_2534260_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|100aa|down_2|NZ_CP047784.1_2534279_2534579_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_3|NZ_CP047784.1_2534709_2535267_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_4|NZ_CP047784.1_2535259_2535964_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|337aa|down_5|NZ_CP047784.1_2536061_2537072_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|277aa|down_6|NZ_CP047784.1_2537091_2537922_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|297aa|down_7|NZ_CP047784.1_2538068_2538959_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|447aa|down_8|NZ_CP047784.1_2539055_2540396_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|369aa|down_9|NZ_CP047784.1_2540389_2541496_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase
