The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2690371	723008	730829	2690371		Hokovirus(16.67%)	10	NA	NA
WP_000244415.1|723008_724064_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000149344.1|724063_724750_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|724724_725198_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093562.1|725540_725981_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000604990.1|726260_726845_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|726943_727657_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|727660_728080_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|728081_728750_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_043044677.1|729100_729694_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	2.0e-38
WP_001217797.1|729677_730829_+	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
>prophage 2
NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2690371	742795	757726	2690371		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000663029.1|742795_743854_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
WP_000197262.1|744192_744735_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|745559_746477_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000193751.1|746758_748264_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|748603_749104_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|749123_749990_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|750790_751189_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|751151_753257_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|753374_754346_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|754859_755015_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|755053_756025_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_043044670.1|756011_756968_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616840.1|756964_757726_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
>prophage 3
NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2690371	1003800	1012273	2690371		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1003800_1004283_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010406.1|1004269_1005394_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1005397_1006102_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_160198937.1|1006101_1006365_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1006366_1007038_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032727.1|1007030_1009220_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_160198938.1|1009198_1010683_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	4.2e-45
WP_000030812.1|1010675_1011704_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1011706_1012273_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 4
NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2690371	1551560	1559890	2690371	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1551560_1552346_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1552471_1553362_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062177.1|1553371_1554718_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_043044328.1|1554831_1555932_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624583.1|1555934_1556612_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1556742_1557849_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217257.1|1558072_1559890_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
>prophage 5
NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2690371	1627781	1636824	2690371	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1627781_1628300_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_043044366.1|1628321_1630595_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000749795.1|1630797_1633077_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1633351_1633612_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1633630_1634770_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019178.1|1634792_1635818_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005768.1|1635819_1636824_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP047784	Staphylococcus aureus strain UP_1209 chromosome, complete genome	2690371	1762132	1833459	2690371	transposase,protease,tRNA	Staphylococcus_phage(90.57%)	68	NA	NA
WP_006190539.1|1762132_1768693_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.5	3.5e-309
WP_000836465.1|1769018_1769330_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108730.1|1769351_1771766_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_001025067.1|1772057_1773239_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_043044059.1|1773348_1774302_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1774298_1774862_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_043044060.1|1774981_1775383_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266092.1|1777075_1777903_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1777905_1778025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043044062.1|1778136_1779138_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	2.9e-183
WP_001008551.1|1779259_1779724_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_043044063.1|1779736_1780918_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.1e-226
WP_000493892.1|1780928_1781561_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384185.1|1781567_1782599_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_001261679.1|1783091_1784594_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221185.1|1785117_1785432_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	4.4e-53
WP_160198955.1|1785431_1786724_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	3.2e-227
WP_001032833.1|1786810_1787665_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1787940_1788165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043044066.1|1788363_1788834_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.7	2.3e-82
WP_001153742.1|1788946_1789390_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030469.1|1789376_1789820_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001168907.1|1790115_1790751_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1791190_1791904_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1792163_1792466_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1792721_1793087_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623478.1|1793083_1793437_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_000453314.1|1793819_1794653_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000366163.1|1794864_1795773_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000933822.1|1795897_1797091_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1797462_1799055_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_016169057.1|1799307_1800054_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000672013.1|1800058_1800532_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_000718107.1|1800597_1800855_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_043044068.1|1800851_1801853_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	2.8e-186
WP_043044069.1|1801857_1803336_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.1	2.1e-278
WP_072398272.1|1803494_1803950_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_072490651.1|1804252_1804903_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	2.0e-55
WP_043044072.1|1804983_1805979_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_043044073.1|1806053_1806680_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	95.2	1.6e-94
WP_000627540.1|1806720_1807062_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_023914802.1|1807162_1807735_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_104011150.1|1807933_1809018_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.6	1.6e-78
WP_001801861.1|1809162_1809258_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791232.1|1809380_1809482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043044078.1|1810099_1810543_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_043044079.1|1810542_1810986_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000747799.1|1810985_1811429_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_070005508.1|1811963_1814384_+	polysaccharide lyase 8 family protein	NA	NA	NA	NA	NA
WP_043044081.1|1814443_1815298_-	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
WP_070005507.1|1815547_1816789_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	33.9	2.4e-41
WP_043044083.1|1816781_1818338_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.8e-286
WP_043044084.1|1818715_1819435_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	3.0e-129
WP_001038735.1|1819576_1820293_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	1.8e-131
WP_043044085.1|1820450_1821170_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	95.8	1.4e-126
WP_043044086.1|1821318_1822035_-|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.2	9.3e-83
WP_001039438.1|1822156_1822876_-|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	86.6	1.6e-114
WP_001038877.1|1822933_1823656_-|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	85.0	2.7e-114
WP_160198956.1|1823713_1824436_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	1.9e-128
WP_043044088.1|1824560_1825268_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	2.1e-127
WP_043044090.1|1826231_1826798_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	98.4	1.1e-97
WP_000469595.1|1827271_1827490_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_043044092.1|1827745_1828219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000543854.1|1828223_1829015_+	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000782463.1|1829385_1830369_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000473596.1|1830370_1831306_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_043044093.1|1832202_1832634_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	80.4	1.6e-61
WP_043044094.1|1832670_1833459_+	DUF1829 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	99.6	1.9e-145
