The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	0	54072	2733044	protease,holin,terminase,tail,capsid,portal,head	Staphylococcus_phage(88.24%)	60	NA	NA
WP_000133309.1|0_1695_+|terminase	terminase	terminase	D2JLE4	Staphylococcus_phage	99.8	0.0e+00
WP_000644967.1|1669_1909_+	hypothetical protein	NA	A7TWC1	Staphylococcus_phage	98.7	2.0e-34
WP_160186758.1|1974_3165_+|portal	phage portal protein	portal	D2JLE6	Staphylococcus_phage	99.2	5.8e-223
WP_000032523.1|3157_3742_+|head,protease	HK97 family phage prohead protease	head,protease	D2JLE7	Staphylococcus_phage	99.5	2.9e-106
WP_000849958.1|3829_5077_+|capsid	phage major capsid protein	capsid	Q8SDK8	Staphylococcus_phage	97.8	9.2e-211
WP_001252099.1|5112_5271_+	hypothetical protein	NA	D2JLE9	Staphylococcus_phage	100.0	3.2e-20
WP_001177489.1|5279_5612_+|head,tail	phage head-tail adapter protein	head,tail	D2JLF0	Staphylococcus_phage	99.1	8.2e-58
WP_000975314.1|5598_5934_+|head,tail	head-tail adaptor protein	head,tail	A7TWC7	Staphylococcus_phage	100.0	1.1e-59
WP_160186678.1|5933_6311_+	HK97 gp10 family phage protein	NA	D2JLF2	Staphylococcus_phage	98.4	4.4e-60
WP_000611449.1|6307_6688_+	hypothetical protein	NA	D2JLF3	Staphylococcus_phage	99.2	1.3e-67
WP_000570652.1|6688_7642_+|tail	phage tail protein	tail	A7TWD0	Staphylococcus_phage	100.0	6.2e-175
WP_000442601.1|7706_8153_+	hypothetical protein	NA	D2JLF5	Staphylococcus_phage	100.0	5.4e-73
WP_000571956.1|8212_8335_+	hypothetical protein	NA	D2JLF6	Staphylococcus_phage	97.5	2.6e-14
WP_160186679.1|8390_13073_+|tail	phage tail tape measure protein	tail	Q8SDK4	Staphylococcus_phage	90.7	0.0e+00
WP_001154317.1|13072_14563_+|tail	phage tail protein	tail	R9QST9	Staphylococcus_phage	100.0	3.1e-298
WP_000582128.1|14578_18361_+	hypothetical protein	NA	A0A1V0E5H3	Staphylococcus_phage	99.8	0.0e+00
WP_001000058.1|18353_18506_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262620.1|18551_18839_+	hypothetical protein	NA	C5I682	Staphylococcus_phage	100.0	9.9e-44
WP_000340977.1|18894_19269_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_072353918.1|19411_19588_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	94.8	5.5e-21
WP_001791821.1|19640_19748_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|19799_20054_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861038.1|20065_20821_+	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000920038.1|21011_21503_+	staphylokinase	NA	A0A1W6JQ12	Staphylococcus_phage	99.4	4.7e-86
WP_001110820.1|22192_22489_+	peptidoglycan hydrolase	NA	A0A1P8L6B4	Staphylococcus_phage	95.9	1.6e-49
WP_000702263.1|22999_23350_+	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|23402_23663_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669791.1|23973_24153_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	98.3	1.4e-24
WP_070248244.1|25111_26860_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001068542.1|27439_28726_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|28925_29024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|29266_29443_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|29701_30082_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991302.1|30078_30975_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000645726.1|30975_31656_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763048.1|31652_32525_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_001221651.1|32524_33265_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000182842.1|33330_33894_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_000966288.1|34014_34539_+	membrane protein	NA	NA	NA	NA	NA
WP_001033971.1|34598_35156_+	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000713059.1|35152_35995_+	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_043044150.1|36051_37092_-	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000267034.1|37542_37716_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000205106.1|38286_38688_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000181322.1|38957_39986_+	lactonase family protein	NA	NA	NA	NA	NA
WP_043044151.1|40105_41485_-	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_001790680.1|41536_41710_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001140871.1|41904_42834_-	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_000149686.1|42886_43447_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_043044152.1|43818_44916_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.3	3.7e-46
WP_000323160.1|45120_46683_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_001802312.1|46693_46801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023914859.1|46872_47667_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_043044154.1|47686_48763_-	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_000284433.1|48946_50416_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	3.5e-108
WP_000040866.1|50408_51230_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
WP_160186680.1|51500_52103_+	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000669862.1|52083_52257_+	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000434933.1|52548_52875_-	staphostatin A	NA	NA	NA	NA	NA
WP_043044155.1|52905_54072_-|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
>prophage 2
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	118180	167717	2733044	tRNA,protease	Staphylococcus_phage(84.21%)	46	NA	NA
WP_001793998.1|118180_119323_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|119327_119798_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|119956_120556_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|120580_120733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901019.1|121727_122123_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116236.1|122318_123704_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|124165_124987_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_043044104.1|125149_126262_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_043044103.1|126283_126907_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|127262_127727_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_043044102.1|127905_129030_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|129098_129443_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_043044101.1|130377_131574_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_043044100.1|131563_134500_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|134496_135438_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|135558_136521_-	foldase	NA	NA	NA	NA	NA
WP_000477957.1|136725_137283_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|138017_138383_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|138524_138947_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|139080_139821_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_043044099.1|139813_141037_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_043044098.1|141160_141664_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|141826_141937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|141926_142964_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_043044096.1|143021_143945_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167551.1|143968_145369_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|145690_146245_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_043044094.1|148701_149490_-	DUF1829 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	99.6	1.9e-145
WP_043044093.1|149526_149958_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	80.4	1.6e-61
WP_000473596.1|150854_151790_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|151791_152775_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|153145_153937_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_043044092.1|153941_154415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469595.1|154670_154889_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	81.9	1.4e-26
WP_043044090.1|155362_155929_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	98.4	1.1e-97
WP_043044088.1|156892_157600_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.4	2.1e-127
WP_043044087.1|157724_158447_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.2	2.1e-130
WP_001038877.1|158504_159227_+|protease	serine protease	protease	A0A2H4PQN0	Staphylococcus_phage	85.0	2.7e-114
WP_001039438.1|159284_160004_+|protease	serine protease	protease	A0A2H4PQP7	Staphylococcus_phage	86.6	1.6e-114
WP_043044086.1|160125_160842_+|protease	serine protease	protease	A0A2H4PQN5	Staphylococcus_phage	62.2	9.3e-83
WP_043044085.1|160990_161710_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	95.8	1.4e-126
WP_001038735.1|161867_162584_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	99.2	1.8e-131
WP_043044084.1|162725_163445_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	98.3	3.0e-129
WP_043044083.1|163822_165379_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	98.6	2.8e-286
WP_070005507.1|165371_166613_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	33.9	2.4e-41
WP_043044081.1|166862_167717_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
>prophage 3
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	173142	204023	2733044	transposase,protease	Staphylococcus_phage(90.0%)	34	NA	NA
WP_104011150.1|173142_174226_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	53.6	1.6e-78
WP_023914802.1|174425_174998_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.8	3.2e-25
WP_000627540.1|175098_175440_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_043044073.1|175480_176107_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	95.2	1.6e-94
WP_043044072.1|176181_177177_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_072490651.1|177257_177908_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	99.1	2.0e-55
WP_072398272.1|178210_178666_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_043044069.1|178824_180303_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	96.1	2.1e-278
WP_160186683.1|180307_181309_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	3.7e-186
WP_000718107.1|181305_181563_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|181628_182102_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_016169057.1|182106_182853_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	99.2	2.2e-143
WP_000109906.1|183105_184698_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|185069_186263_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366163.1|186387_187296_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453314.1|187507_188341_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	100.0	5.4e-159
WP_000623478.1|188723_189077_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	100.0	2.6e-22
WP_001200542.1|189073_189439_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|189694_189997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|190256_190970_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168907.1|191409_192045_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|192340_192784_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|192770_193214_-	competence protein ComK	NA	NA	NA	NA	NA
WP_043044066.1|193326_193797_-	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.7	2.3e-82
WP_000384171.1|193995_194220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|194495_195350_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_043044065.1|195436_196729_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	1.9e-227
WP_000221185.1|196728_197043_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	99.0	4.4e-53
WP_001261679.1|197565_199068_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000384185.1|199560_200592_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493892.1|200598_201231_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_043044063.1|201241_202423_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	1.1e-226
WP_001008551.1|202435_202900_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_043044062.1|203021_204023_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.1	2.9e-183
>prophage 4
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	207297	220027	2733044	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|207297_207861_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_043044059.1|207857_208811_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|208920_210102_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_160186684.1|210393_212808_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.3	0.0e+00
WP_000836465.1|212829_213141_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_006190539.1|213466_220027_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.5	3.5e-309
>prophage 5
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	345593	354636	2733044	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005768.1|345593_346598_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|346599_347625_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|347647_348787_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|348805_349066_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_160186685.1|349340_351620_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_043044366.1|351822_354096_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|354117_354636_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 6
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	422530	430860	2733044	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217257.1|422530_424348_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
WP_001283055.1|424571_425678_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624583.1|425808_426486_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_043044328.1|426488_427589_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062177.1|427702_429049_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924214.1|429058_429949_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|430074_430860_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 7
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	970350	978823	2733044		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|970350_970917_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|970919_971948_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|971940_973425_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|973403_975593_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|975585_976257_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|976258_976522_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|976521_977226_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_160186707.1|977229_978354_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|978340_978823_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 8
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	998752	1032059	2733044	transposase,bacteriocin,protease	Enterococcus_phage(16.67%)	36	NA	NA
WP_043044609.1|998752_999934_+|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
WP_000284457.1|999971_1000301_+	staphostatin B	NA	NA	NA	NA	NA
WP_000184947.1|1000539_1001361_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000150199.1|1001353_1002157_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000526687.1|1002143_1003817_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_072399156.1|1003803_1005015_-	isochorismate synthase	NA	NA	NA	NA	NA
WP_001791731.1|1005091_1005196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070966.1|1005346_1006285_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000620949.1|1006336_1006888_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001788574.1|1006977_1007268_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_072353879.1|1007331_1007463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081352.1|1007508_1008468_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1008955_1009312_+	DoxX family protein	NA	NA	NA	NA	NA
WP_072399158.1|1009400_1009589_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001796515.1|1009678_1009969_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043044616.1|1010056_1010698_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	7.7e-20
WP_000873929.1|1010694_1011015_-	YxeA family protein	NA	NA	NA	NA	NA
WP_070005428.1|1011017_1012982_-|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_072399255.1|1013025_1013298_-|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_001790623.1|1013307_1013409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033867.1|1014326_1014929_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000214898.1|1014943_1015120_-	YkvS family protein	NA	NA	NA	NA	NA
WP_000668823.1|1015318_1016305_+	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000876826.1|1016385_1016604_-	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000287265.1|1016813_1017383_+	competence protein ComK	NA	NA	NA	NA	NA
WP_043044620.1|1017869_1019381_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000021872.1|1019519_1020878_-	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_072399161.1|1020894_1023219_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.1e-11
WP_000928413.1|1023434_1024238_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_043044623.1|1024539_1026102_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	2.2e-36
WP_072399163.1|1026101_1026362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043044624.1|1026342_1027827_-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_043044625.1|1028259_1029435_+	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_001794241.1|1029394_1030603_+	MFS transporter	NA	NA	NA	NA	NA
WP_000600387.1|1030715_1031225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000251964.1|1031882_1032059_-|transposase	IS3 family transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.9	4.5e-07
>prophage 9
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	1224837	1239712	2733044		uncultured_Caudovirales_phage(50.0%)	13	NA	NA
WP_000616840.1|1224837_1225599_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_043044670.1|1225595_1226552_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1226538_1227510_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1227548_1227704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1228217_1229189_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|1229306_1231412_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1231374_1231773_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|1232573_1233440_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1233459_1233960_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1234299_1235805_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000429014.1|1236086_1237004_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197262.1|1237772_1238315_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663029.1|1238653_1239712_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	2.3e-21
>prophage 10
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	1251678	1259499	2733044		Pandoravirus(16.67%)	10	NA	NA
WP_001217797.1|1251678_1252830_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	36.1	2.1e-23
WP_043044677.1|1252813_1253407_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	43.5	2.0e-38
WP_000446724.1|1253757_1254426_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1254427_1254847_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1254850_1255564_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1255662_1256247_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1256526_1256967_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1257309_1257783_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1257757_1258444_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1258443_1259499_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
>prophage 11
NZ_CP047813	Staphylococcus aureus strain UP_1500 chromosome, complete genome	2733044	2711273	2733042	2733044	terminase,integrase	Staphylococcus_phage(97.5%)	40	2707996:2708010	2722502:2722516
2707996:2708010	attL	TTTTGAAACAAAGTA	NA	NA	NA	NA
WP_000791404.1|2711273_2712326_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.6	2.5e-36
WP_000595401.1|2712347_2713364_+	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.3	2.3e-26
WP_000857176.1|2714482_2715520_-|integrase	site-specific integrase	integrase	A7TWL3	Staphylococcus_phage	100.0	3.4e-179
WP_000191459.1|2715627_2716242_+	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_001013104.1|2716238_2716385_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705243.1|2716420_2716603_-	hypothetical protein	NA	R9QT81	Staphylococcus_phage	100.0	5.3e-27
WP_000804508.1|2716647_2717505_-	restriction endonuclease	NA	R9QTP0	Staphylococcus_phage	100.0	1.2e-161
WP_160186753.1|2717516_2718233_-	helix-turn-helix domain-containing protein	NA	R9QTP6	Staphylococcus_phage	99.6	7.8e-130
WP_000639922.1|2718396_2718639_+	DUF739 family protein	NA	R9QSU1	Staphylococcus_phage	100.0	9.5e-40
WP_001148565.1|2718654_2719443_+	phage antirepressor KilAC domain-containing protein	NA	R9QSV3	Staphylococcus_phage	100.0	1.2e-144
WP_001148859.1|2719458_2719653_+	hypothetical protein	NA	A0A1P8L6G6	Staphylococcus_phage	100.0	4.3e-19
WP_000768245.1|2719647_2720004_-	DUF2513 domain-containing protein	NA	A0A1P8L6H1	Staphylococcus_phage	100.0	6.1e-59
WP_001148605.1|2720053_2720806_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148862.1|2720821_2721019_+	hypothetical protein	NA	O80075	Staphylococcus_phage	87.7	3.5e-24
WP_000762521.1|2721005_2721386_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2721440_2721764_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2721760_2721922_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2722016_2722319_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2722323_2722584_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
2722502:2722516	attR	TTTTGAAACAAAGTA	NA	NA	NA	NA
WP_001205732.1|2722592_2722856_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700555.1|2722864_2724808_+	AAA family ATPase	NA	S4V9K6	Staphylococcus_phage	100.0	0.0e+00
WP_000138475.1|2724809_2725730_+	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_071665632.1|2725810_2726428_+	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000934760.1|2726428_2726899_+	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	99.4	7.4e-81
WP_043044133.1|2726928_2727822_+	DnaD domain-containing protein	NA	A0A2I6PDG7	Staphylococcus_phage	99.0	2.1e-140
WP_000338528.1|2727828_2728047_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401964.1|2728055_2728460_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A0E3XBN4	Staphylococcus_phage	100.0	1.4e-72
WP_000101273.1|2728472_2728841_+	hypothetical protein	NA	I1W656	Staphylococcus_phage	98.4	1.2e-49
WP_000131370.1|2728844_2729087_+	hypothetical protein	NA	Q4ZDP7	Staphylococcus_virus	95.0	2.1e-39
WP_001065097.1|2729101_2729356_+	DUF1024 family protein	NA	A0A0H3U469	Staphylococcus_phage	100.0	5.0e-39
WP_001066447.1|2729505_2730042_+	hypothetical protein	NA	A0A0H3U2Z8	Staphylococcus_phage	100.0	7.2e-96
WP_001282074.1|2730078_2730324_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000195782.1|2730320_2730509_+	DUF1381 domain-containing protein	NA	A0A2I6PDV0	Staphylococcus_phage	100.0	2.1e-26
WP_001125015.1|2730483_2730684_+	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000501855.1|2730671_2730836_+	transcriptional activator RinB	NA	A0A2I6PDY4	Staphylococcus_phage	98.1	5.1e-21
WP_001813913.1|2730835_2731036_+	DUF1514 domain-containing protein	NA	R9QT57	Staphylococcus_phage	98.5	1.5e-27
WP_000282752.1|2731058_2731520_+	hypothetical protein	NA	D2JLE0	Staphylococcus_phage	100.0	1.1e-68
WP_000406193.1|2731633_2732086_+	nucleoside triphosphate pyrophosphohydrolase family protein	NA	D2JLE1	Staphylococcus_phage	99.3	3.9e-79
WP_016169209.1|2732101_2732446_+	HNH endonuclease	NA	D2JLE2	Staphylococcus_phage	98.2	2.7e-64
WP_000919027.1|2732574_2733042_+|terminase	phage terminase small subunit P27 family	terminase	D2JLE3	Staphylococcus_phage	100.0	3.3e-81
