assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	1	406157-406241	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	3	406183-406215|406183-406215|406183-406215	NZ_CP047777.1_676084-676052|NZ_CP047777.1_1916534-1916502|NZ_CP047777.1_1236776-1236808	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA	NA|190aa|up_9|NZ_CP047777.1_396786_397356_+	TIGR00482, Probable_nicotinate-nucleotide_adenylyltransferase, nicotinate (nicotinamide) nucleotide adenylyltransferase	NA|195aa|up_8|NZ_CP047777.1_397345_397930_+	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|118aa|up_7|NZ_CP047777.1_397930_398284_+	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown]	NA|239aa|up_6|NZ_CP047777.1_398286_399003_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|229aa|up_5|NZ_CP047777.1_399042_399729_+	COG1555, ComEA, DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	NA|154aa|up_4|NZ_CP047777.1_399820_400282_+	TIGR02571, putative_dCMP_deaminase, ComE operon protein 2	NA|716aa|up_3|NZ_CP047777.1_400340_402488_+	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|325aa|up_2|NZ_CP047777.1_402544_403519_+	PRK05574, holA, DNA polymerase III subunit delta; Reviewed	NA|84aa|up_1|NZ_CP047777.1_403563_403815_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|608aa|up_0|NZ_CP047777.1_404160_405984_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|375aa|down_0|NZ_CP047777.1_406549_407674_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|326aa|down_1|NZ_CP047777.1_407774_408752_+	TIGR00331, Heat-inducible_transcription_repressor_HrcA, heat shock gene repressor HrcA	NA|209aa|down_2|NZ_CP047777.1_408783_409410_+	PRK14140, PRK14140, heat shock protein GrpE; Provisional	NA|611aa|down_3|NZ_CP047777.1_409478_411311_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|380aa|down_4|NZ_CP047777.1_411446_412586_+	PRK14280, PRK14280, molecular chaperone DnaJ	NA|313aa|down_5|NZ_CP047777.1_412589_413528_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|251aa|down_6|NZ_CP047777.1_413529_414282_+	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|449aa|down_7|NZ_CP047777.1_414288_415635_+	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|59aa|down_8|NZ_CP047777.1_415927_416104_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|228aa|down_9|NZ_CP047777.1_416347_417031_+	COG1030, NfeD, Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2	887649-887734	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGTTGGGCCCCACCCCAACTTGCATTGT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|75aa|up_5|NZ_CP047777.1_882386_882611_-,NA|49aa|up_4|NZ_CP047777.1_882567_882714_-,NA|78aa|up_1|NZ_CP047777.1_886342_886576_+,NA|62aa|up_0|NZ_CP047777.1_887197_887383_+,NA|169aa|down_2|NZ_CP047777.1_889349_889856_-,NA|56aa|down_5|NZ_CP047777.1_891818_891986_-	NA|334aa|up_9|NZ_CP047777.1_878088_879090_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_8|NZ_CP047777.1_879527_880253_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_7|NZ_CP047777.1_880347_881073_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_6|NZ_CP047777.1_881180_881897_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|up_5|NZ_CP047777.1_882386_882611_-	NA	NA|49aa|up_4|NZ_CP047777.1_882567_882714_-	NA	NA|320aa|up_3|NZ_CP047777.1_883386_884346_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|440aa|up_2|NZ_CP047777.1_884504_885824_-	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|78aa|up_1|NZ_CP047777.1_886342_886576_+	NA	NA|62aa|up_0|NZ_CP047777.1_887197_887383_+	NA	NA|117aa|down_0|NZ_CP047777.1_888092_888443_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_1|NZ_CP047777.1_888592_889090_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|169aa|down_2|NZ_CP047777.1_889349_889856_-	NA	NA|134aa|down_3|NZ_CP047777.1_890525_890927_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|110aa|down_4|NZ_CP047777.1_891295_891625_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|56aa|down_5|NZ_CP047777.1_891818_891986_-	NA	NA|168aa|down_6|NZ_CP047777.1_892113_892617_-	COG0622, COG0622, Predicted phosphoesterase [General function prediction only]	NA|196aa|down_7|NZ_CP047777.1_892609_893197_-	PRK14822, PRK14822, XTP/dITP diphosphatase	NA|267aa|down_8|NZ_CP047777.1_893208_894009_-	PRK00865, PRK00865, glutamate racemase; Provisional	NA|272aa|down_9|NZ_CP047777.1_894244_895060_-	PRK08640, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	3	1193239-1193320	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	1193263-1193296	NZ_CP047777.1_676085-676052	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|38aa|down_1|NZ_CP047777.1_1194303_1194417_-	NA|414aa|up_9|NZ_CP047777.1_1183666_1184908_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP047777.1_1185022_1186330_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP047777.1_1186427_1187189_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP047777.1_1187516_1188368_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP047777.1_1188601_1188796_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP047777.1_1189149_1189971_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP047777.1_1189988_1190684_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP047777.1_1190676_1191702_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP047777.1_1191951_1192248_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP047777.1_1192240_1192627_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP047777.1_1193423_1194302_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP047777.1_1194303_1194417_-	NA	NA|127aa|down_2|NZ_CP047777.1_1194480_1194861_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP047777.1_1195018_1195375_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP047777.1_1195518_1195839_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP047777.1_1195989_1196529_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP047777.1_1196611_1197328_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP047777.1_1197475_1197898_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP047777.1_1198296_1198791_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP047777.1_1198945_1199563_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	4	1242287-1242365	4	CRISPRCasFinder	no	cas3	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	AGAATTTCGAAAAGAAATTCTACA	24	1	3	1242311-1242341|1242311-1242341|1242311-1242341	NZ_CP047777.1_1792723-1792693|NZ_CP047777.1_371729-371759|NZ_CP047777.1_1792778-1792748	NA	1	1	Unclear	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|36aa|down_5|NZ_CP047777.1_1249843_1249951_-,NA|35aa|down_7|NZ_CP047777.1_1251383_1251488_-	NA|301aa|up_9|NZ_CP047777.1_1231169_1232072_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP047777.1_1232314_1232902_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP047777.1_1233465_1234410_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP047777.1_1234520_1235516_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP047777.1_1235512_1236424_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP047777.1_1237308_1238244_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP047777.1_1238310_1239750_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP047777.1_1239757_1240243_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP047777.1_1240250_1241090_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP047777.1_1241095_1242028_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP047777.1_1242691_1245538_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP047777.1_1245545_1247531_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP047777.1_1247799_1248036_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|217aa|down_3|NZ_CP047777.1_1248032_1248683_-	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|280aa|down_4|NZ_CP047777.1_1248856_1249696_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_5|NZ_CP047777.1_1249843_1249951_-	NA	NA|370aa|down_6|NZ_CP047777.1_1250104_1251215_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_7|NZ_CP047777.1_1251383_1251488_-	NA	NA|844aa|down_8|NZ_CP047777.1_1251529_1254061_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_9|NZ_CP047777.1_1254474_1255047_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	5	1632027-1632129	5	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|179aa|up_7|NZ_CP047777.1_1623645_1624182_+,NA|221aa|up_1|NZ_CP047777.1_1630273_1630936_+,NA|33aa|down_0|NZ_CP047777.1_1632804_1632903_-,NA|128aa|down_6|NZ_CP047777.1_1639150_1639534_+,NA|70aa|down_8|NZ_CP047777.1_1640358_1640568_+	NA|91aa|up_9|NZ_CP047777.1_1621878_1622151_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP047777.1_1622549_1623254_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP047777.1_1623645_1624182_+	NA	NA|514aa|up_6|NZ_CP047777.1_1624294_1625836_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP047777.1_1625860_1627327_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP047777.1_1627364_1628633_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP047777.1_1628632_1629211_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP047777.1_1629723_1630131_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP047777.1_1630273_1630936_+	NA	NA|319aa|up_0|NZ_CP047777.1_1631053_1632010_+	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|33aa|down_0|NZ_CP047777.1_1632804_1632903_-	NA	NA|463aa|down_1|NZ_CP047777.1_1632987_1634376_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP047777.1_1634455_1635211_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP047777.1_1635702_1636272_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP047777.1_1636287_1637811_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|209aa|down_5|NZ_CP047777.1_1638254_1638881_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_6|NZ_CP047777.1_1639150_1639534_+	NA	NA|194aa|down_7|NZ_CP047777.1_1639599_1640181_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_8|NZ_CP047777.1_1640358_1640568_+	NA	NA|84aa|down_9|NZ_CP047777.1_1640606_1640858_-	COG2261, COG2261, Predicted membrane protein [Function unknown]
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	6	2293010-2293143	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TATTGAAGAAGATACAA	17	2	2	2293027-2293072|2293090-2293126	NZ_CP047777.1_2289377-2289422|NZ_CP047777.1_2289440-2289476	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|67aa|up_1|NZ_CP047777.1_2286553_2286754_+,NA|78aa|down_4|NZ_CP047777.1_2302227_2302461_+,NA|103aa|down_5|NZ_CP047777.1_2302568_2302877_-,NA|89aa|down_6|NZ_CP047777.1_2303020_2303287_-	NA|426aa|up_9|NZ_CP047777.1_2276550_2277828_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_8|NZ_CP047777.1_2278304_2280128_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_7|NZ_CP047777.1_2280266_2280683_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_6|NZ_CP047777.1_2280913_2281606_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_5|NZ_CP047777.1_2281770_2282535_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_4|NZ_CP047777.1_2282687_2283368_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_3|NZ_CP047777.1_2283391_2284945_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_2|NZ_CP047777.1_2285061_2286420_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|67aa|up_1|NZ_CP047777.1_2286553_2286754_+	NA	NA|1039aa|up_0|NZ_CP047777.1_2286888_2290005_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047777.1_2293751_2294618_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|248aa|down_1|NZ_CP047777.1_2294828_2295572_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|119aa|down_2|NZ_CP047777.1_2295895_2296252_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|359aa|down_3|NZ_CP047777.1_2301054_2302131_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|78aa|down_4|NZ_CP047777.1_2302227_2302461_+	NA	NA|103aa|down_5|NZ_CP047777.1_2302568_2302877_-	NA	NA|89aa|down_6|NZ_CP047777.1_2303020_2303287_-	NA	NA|603aa|down_7|NZ_CP047777.1_2303570_2305379_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_8|NZ_CP047777.1_2305510_2305903_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_9|NZ_CP047777.1_2305904_2308766_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	7	2369324-2369402	6	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	TGCAAGTTGGCGGGGCCCCAACA	23	1	6	2369347-2369379|2369347-2369379|2369347-2369379|2369347-2369379|2369347-2369379|2369347-2369379	NZ_CP047777.1_1192950-1192982|NZ_CP047777.1_1229421-1229453|NZ_CP047777.1_2759517-2759485|NZ_CP047777.1_1229477-1229509|NZ_CP047777.1_1229533-1229565|NZ_CP047777.1_1229589-1229621	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|220aa|up_3|NZ_CP047777.1_2366248_2366908_-,NA|36aa|up_0|NZ_CP047777.1_2368897_2369005_+,NA	NA|610aa|up_9|NZ_CP047777.1_2356740_2358570_+	pfam13520, AA_permease_2, Amino acid permease	NA|693aa|up_8|NZ_CP047777.1_2358710_2360789_-	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|470aa|up_7|NZ_CP047777.1_2360926_2362336_-	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]	NA|219aa|up_6|NZ_CP047777.1_2363490_2364147_-	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown]	NA|158aa|up_5|NZ_CP047777.1_2364259_2364733_+	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	NA|404aa|up_4|NZ_CP047777.1_2364855_2366067_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|220aa|up_3|NZ_CP047777.1_2366248_2366908_-	NA	NA|381aa|up_2|NZ_CP047777.1_2366967_2368110_-	TIGR00045, Glycerate_kinase, glycerate kinase	NA|129aa|up_1|NZ_CP047777.1_2368377_2368764_+	COG2246, COG2246, Predicted membrane protein [Function unknown]	NA|36aa|up_0|NZ_CP047777.1_2368897_2369005_+	NA	NA|588aa|down_0|NZ_CP047777.1_2369707_2371471_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|down_1|NZ_CP047777.1_2371495_2373229_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_2|NZ_CP047777.1_2373681_2374368_+	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism]	NA|453aa|down_3|NZ_CP047777.1_2374345_2375704_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|down_4|NZ_CP047777.1_2375705_2376713_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|down_5|NZ_CP047777.1_2376690_2377806_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|down_6|NZ_CP047777.1_2377816_2378509_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|down_7|NZ_CP047777.1_2378519_2378987_+	pfam06177, QueT, QueT transporter	NA|326aa|down_8|NZ_CP047777.1_2379038_2380016_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|down_9|NZ_CP047777.1_2380017_2380965_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	8	2533877-2533957	7	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL,RT	Orphan	CAAGTTGGCGGGGCCCCAACACAGA	25	1	15	2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932|2533902-2533932	NZ_CP047777.1_1229481-1229511|NZ_CP047777.1_1229537-1229567|NZ_CP047777.1_1229593-1229623|NZ_CP047777.1_391577-391547|NZ_CP047777.1_676126-676096|NZ_CP047777.1_882223-882193|NZ_CP047777.1_1408710-1408680|NZ_CP047777.1_1670866-1670836|NZ_CP047777.1_82081-82111|NZ_CP047777.1_587663-587693|NZ_CP047777.1_986246-986276|NZ_CP047777.1_1192954-1192984|NZ_CP047777.1_1229425-1229455|NZ_CP047777.1_2015301-2015331|NZ_CP047777.1_2544703-2544733	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|62aa|down_0|NZ_CP047777.1_2533998_2534184_-,NA|84aa|down_5|NZ_CP047777.1_2537323_2537575_-,NA|106aa|down_8|NZ_CP047777.1_2542696_2543014_-,NA|55aa|down_9|NZ_CP047777.1_2543258_2543423_-	NA|202aa|up_9|NZ_CP047777.1_2526769_2527375_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047777.1_2527544_2528549_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047777.1_2528579_2529086_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047777.1_2529087_2529582_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047777.1_2529644_2530904_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047777.1_2530900_2531386_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047777.1_2531399_2531846_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047777.1_2531851_2532085_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047777.1_2532091_2532691_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047777.1_2532710_2533733_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|62aa|down_0|NZ_CP047777.1_2533998_2534184_-	NA	NA|117aa|down_1|NZ_CP047777.1_2534309_2534660_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047777.1_2534761_2535973_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047777.1_2535965_2536406_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047777.1_2536567_2537332_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047777.1_2537323_2537575_-	NA	NA|422aa|down_6|NZ_CP047777.1_2537963_2539229_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047777.1_2539345_2542513_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047777.1_2542696_2543014_-	NA	NA|55aa|down_9|NZ_CP047777.1_2543258_2543423_-	NA
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	9	2641921-2642006	8	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	ACTAATGATACGCAAAAATCAGTTGG	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|53aa|down_7|NZ_CP047777.1_2652968_2653127_-,NA|35aa|down_8|NZ_CP047777.1_2653806_2653911_+,NA|364aa|down_9|NZ_CP047777.1_2654343_2655435_-	NA|396aa|up_9|NZ_CP047777.1_2617165_2618353_+	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|228aa|up_8|NZ_CP047777.1_2618371_2619055_+	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|439aa|up_7|NZ_CP047777.1_2619231_2620548_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|up_6|NZ_CP047777.1_2620673_2621147_+	pfam17080, SepA, Multidrug Resistance efflux pump	NA|481aa|up_5|NZ_CP047777.1_2621469_2622912_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|355aa|up_4|NZ_CP047777.1_2623059_2624124_+	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|303aa|up_3|NZ_CP047777.1_2630364_2631273_+	cd09989, Arginase, Arginase family	NA|270aa|up_2|NZ_CP047777.1_2631461_2632271_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|311aa|up_1|NZ_CP047777.1_2632272_2633205_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_0|NZ_CP047777.1_2633231_2634587_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|down_0|NZ_CP047777.1_2642628_2643735_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|down_1|NZ_CP047777.1_2643734_2644169_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|down_2|NZ_CP047777.1_2644180_2646313_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|down_3|NZ_CP047777.1_2646347_2647886_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|down_4|NZ_CP047777.1_2648566_2650372_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|down_5|NZ_CP047777.1_2650603_2651386_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|down_6|NZ_CP047777.1_2651453_2652311_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|down_7|NZ_CP047777.1_2652968_2653127_-	NA	NA|35aa|down_8|NZ_CP047777.1_2653806_2653911_+	NA	NA|364aa|down_9|NZ_CP047777.1_2654343_2655435_-	NA
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	10	2654246-2654327	9	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL,RT	Type I-A	AAGAAGCCCCTAACAACTAAAGTTG	25	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA|53aa|up_1|NZ_CP047777.1_2652968_2653127_-,NA|35aa|up_0|NZ_CP047777.1_2653806_2653911_+,NA|364aa|down_0|NZ_CP047777.1_2654343_2655435_-,NA|77aa|down_5|NZ_CP047777.1_2659221_2659452_+	NA|2482aa|up_9|NZ_CP047777.1_2634864_2642310_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|369aa|up_8|NZ_CP047777.1_2642628_2643735_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_7|NZ_CP047777.1_2643734_2644169_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_6|NZ_CP047777.1_2644180_2646313_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_5|NZ_CP047777.1_2646347_2647886_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_4|NZ_CP047777.1_2648566_2650372_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_3|NZ_CP047777.1_2650603_2651386_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_2|NZ_CP047777.1_2651453_2652311_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|53aa|up_1|NZ_CP047777.1_2652968_2653127_-	NA	NA|35aa|up_0|NZ_CP047777.1_2653806_2653911_+	NA	NA|364aa|down_0|NZ_CP047777.1_2654343_2655435_-	NA	NA|326aa|down_1|NZ_CP047777.1_2655700_2656678_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047777.1_2656679_2657000_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047777.1_2657151_2657817_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047777.1_2658252_2659191_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047777.1_2659221_2659452_+	NA	NA|458aa|down_6|NZ_CP047777.1_2660123_2661497_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047777.1_2661953_2662367_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047777.1_2662566_2663010_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047777.1_2663130_2663841_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_009911835.1_ASM991183v1	NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	11	2783503-2783584	10	CRISPRCasFinder	no	DEDDh	DEDDh,csa3,cas3,DinG,WYL,RT	Unclear	ACAATGCAAGTTGGGGTGGGGGCC	24	1	5	2783527-2783560|2783527-2783560|2783527-2783560|2783527-2783560|2783527-2783560	NZ_CP047777.1_887768-887735|NZ_CP047777.1_1242333-1242366|NZ_CP047777.1_286219-286186|NZ_CP047777.1_671678-671711|NZ_CP047777.1_2092984-2093017	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL,RT	NA,NA|81aa|down_4|NZ_CP047777.1_2789775_2790018_-,NA|61aa|down_6|NZ_CP047777.1_2791111_2791294_-,NA|114aa|down_7|NZ_CP047777.1_2791497_2791839_-	NA|48aa|up_9|NZ_CP047777.1_2773687_2773831_-	smart00794, AgrD, Staphylococcal AgrD protein	NA|188aa|up_8|NZ_CP047777.1_2773833_2774397_-	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]	NA|45aa|up_7|NZ_CP047777.1_2774632_2774767_+	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|262aa|up_6|NZ_CP047777.1_2775366_2776152_-	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|209aa|up_5|NZ_CP047777.1_2776512_2777139_-	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|420aa|up_4|NZ_CP047777.1_2777335_2778595_+	PRK10819, PRK10819, transport protein TonB; Provisional	NA|248aa|up_3|NZ_CP047777.1_2778619_2779363_-	pfam02517, Abi, CAAX protease self-immunity	NA|95aa|up_2|NZ_CP047777.1_2779537_2779822_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|539aa|up_1|NZ_CP047777.1_2779897_2781514_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|436aa|up_0|NZ_CP047777.1_2782053_2783361_-	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|408aa|down_0|NZ_CP047777.1_2783804_2785028_-	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|352aa|down_1|NZ_CP047777.1_2785463_2786519_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|339aa|down_2|NZ_CP047777.1_2786540_2787557_+	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|346aa|down_3|NZ_CP047777.1_2788675_2789713_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|81aa|down_4|NZ_CP047777.1_2789775_2790018_-	NA	NA|328aa|down_5|NZ_CP047777.1_2790028_2791012_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|61aa|down_6|NZ_CP047777.1_2791111_2791294_-	NA	NA|114aa|down_7|NZ_CP047777.1_2791497_2791839_-	NA	DEDDh|311aa|down_8|NZ_CP047777.1_2791844_2792777_-	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|238aa|down_9|NZ_CP047777.1_2792792_2793506_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]
