The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	0	35185	2806864	portal,head,capsid,holin,transposase,tail,terminase,protease	Staphylococcus_phage(100.0%)	38	NA	NA
WP_000625088.1|0_1662_+|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000025274.1|1677_2865_+|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000642728.1|2848_3586_+|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_031763505.1|3609_4755_+|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	99.7	2.8e-214
WP_000238236.1|4774_5059_+	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000150936.1|5048_5333_+|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000755150.1|5316_5679_+|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000114226.1|5675_6080_+	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_031763502.1|6076_6484_+	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	99.3	7.9e-71
WP_000268740.1|6484_7129_+|tail	phage tail protein	tail	G4KNQ7	Staphylococcus_phage	100.0	6.5e-120
WP_071621395.1|7170_7395_+	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_001096355.1|7444_7795_+	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_160177489.1|8039_12569_+|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	96.9	0.0e+00
WP_000567396.1|12565_14050_+|tail	phage tail protein	tail	A0A2I6PDJ0	Staphylococcus_phage	99.8	4.5e-297
WP_000582152.1|14065_17848_+	hypothetical protein	NA	A0A068A201	Staphylococcus_phage	99.6	0.0e+00
WP_001000058.1|17840_17993_+	hypothetical protein	NA	A0A1W6JPL6	Staphylococcus_phage	100.0	7.6e-19
WP_001262621.1|18038_18326_+	hypothetical protein	NA	A0A1X9H0N7	Staphylococcus_phage	100.0	7.6e-44
WP_000340977.1|18381_18756_+	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_000034846.1|19167_19950_+	staphylococcal enterotoxin type P	NA	A0A075M4C7	Staphylococcus_phage	99.6	1.6e-149
WP_011447039.1|20152_20329_+|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_031762631.1|20381_20489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000611512.1|20540_20795_+|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_000861026.1|20806_21562_+	CHAP domain-containing protein	NA	A0A075LZV3	Staphylococcus_phage	100.0	1.2e-152
WP_000920042.1|21752_22244_+	staphylokinase	NA	A0A075LYD3	Staphylococcus_phage	100.0	8.0e-86
WP_000727645.1|23319_23769_-	chemotaxis-inhibiting protein CHIPS	NA	A0A075LZI2	Staphylococcus_phage	100.0	8.7e-79
WP_000702262.1|24451_24802_+	complement inhibitor SCIN-A	NA	A7TWS0	Staphylococcus_phage	100.0	7.5e-54
WP_001791826.1|24854_25115_-	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000669789.1|25429_25609_-	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001557458.1|26566_27997_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000671712.1|28011_28302_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_001557163.1|28497_29817_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_001581722.1|30100_31387_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_000990056.1|31586_31685_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000681968.1|31927_32104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000691584.1|32361_32742_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000991306.1|32738_33635_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	5.0e-17
WP_000645727.1|33635_34316_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000763043.1|34312_35185_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	36.0	1.0e-27
>prophage 2
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	40948	41350	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000205106.1|40948_41350_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
>prophage 3
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	45546	47573	2806864		Bacillus_virus(50.0%)	2	NA	NA
WP_000149686.1|45546_46107_-	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_000275727.1|46475_47573_+	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	3.3e-47
>prophage 4
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	51603	53887	2806864		Bacillus_virus(100.0%)	2	NA	NA
WP_000284436.1|51603_53073_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	5.9e-108
WP_000040866.1|53065_53887_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	2.3e-69
>prophage 5
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	57590	64357	2806864		Gordonia_phage(33.33%)	5	NA	NA
WP_160177492.1|57590_58886_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	5.5e-17
WP_001165363.1|58994_59297_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000272056.1|59468_60161_+	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_000992924.1|60157_62350_+	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000774556.1|62353_64357_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.2	1.2e-114
>prophage 6
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	71531	76560	2806864		Catovirus(33.33%)	5	NA	NA
WP_001231451.1|71531_72479_+	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	27.8	1.2e-16
WP_001147865.1|72559_73921_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	43.6	1.4e-103
WP_000548781.1|74090_74621_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000140172.1|74867_75938_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_000613738.1|76005_76560_-	3'-5' exonuclease	NA	B5WZL1	Staphylococcus_phage	35.7	1.2e-29
>prophage 7
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	80012	80426	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001557448.1|80012_80426_+	hypothetical protein	NA	A0A1Q1PVU5	Staphylococcus_phage	38.3	6.7e-17
>prophage 8
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	85480	86110	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000153535.1|85480_86110_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	8.1e-06
>prophage 9
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	101590	103327	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000597238.1|101590_103327_+	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
>prophage 10
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	116904	225483	2806864	transposase,tRNA,protease	Staphylococcus_phage(92.59%)	100	NA	NA
WP_001557163.1|116904_118224_-|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000063582.1|118833_119895_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649908.1|120152_121610_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|121596_122325_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001793998.1|122460_123603_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181394.1|123607_124078_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|124236_124836_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|124860_125013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901023.1|125560_125956_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116228.1|126151_127537_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|127989_128811_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437969.1|128973_130086_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045135.1|130107_130731_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|131086_131551_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992518.1|131729_132854_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|132922_133267_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001802255.1|133805_133904_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|134194_135391_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584628.1|135380_138317_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|138313_139255_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|139375_140338_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|140542_141100_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|141834_142200_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|142341_142764_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216874.1|142897_143638_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000551836.1|143630_144854_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|144977_145481_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|145643_145754_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|145743_146781_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|146838_147762_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167542.1|147785_149186_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132890.1|149508_150063_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_010922839.1|151422_152205_+	staphylococcal enterotoxin type O	NA	A0A1X9H080	Staphylococcus_phage	36.7	1.1e-31
WP_000821658.1|152485_153205_+	staphylococcal enterotoxin type M	NA	A0A1X9H080	Staphylococcus_phage	35.8	2.3e-25
WP_000713847.1|153239_153968_+	staphylococcal enterotoxin type I	NA	A0A1X9H080	Staphylococcus_phage	39.2	1.1e-27
WP_001236362.1|154931_155687_+	staphylococcal enterotoxin type N	NA	A0A075M4C7	Staphylococcus_phage	41.4	6.0e-40
WP_000736712.1|155969_156746_+	staphylococcal enterotoxin type G	NA	NA	NA	NA	NA
WP_000848318.1|157297_158074_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000617704.1|158094_158331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001581696.1|158408_158903_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000206343.1|159736_160525_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	98.5	3.6e-144
WP_000473596.1|161888_162824_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_000782463.1|162825_163809_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.4	1.8e-185
WP_000543854.1|164178_164970_-	DUF1828 domain-containing protein	NA	NA	NA	NA	NA
WP_000550252.1|164974_165448_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000469591.1|165703_165922_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	80.6	2.0e-25
WP_001092780.1|166394_166976_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	64.8	9.6e-54
WP_001039427.1|167939_168647_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	97.0	7.9e-127
WP_001039454.1|168771_169494_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	98.3	3.5e-130
WP_001581695.1|169551_170271_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.3	1.1e-128
WP_001038753.1|170391_171111_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	97.5	5.6e-128
WP_011447030.1|171059_171167_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038752.1|171268_171988_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	99.6	1.9e-131
WP_001791797.1|172050_172185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001793440.1|172165_173905_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_000072627.1|173897_175127_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	64.7	4.0e-134
WP_001792025.1|176202_176304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|176426_176522_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_000414216.1|177876_178449_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	93.1	2.3e-23
WP_000627540.1|178549_178891_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	94.7	1.1e-54
WP_160177496.1|178931_179558_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	78.4	9.0e-74
WP_000070642.1|179632_180628_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	97.9	2.6e-67
WP_001795210.1|180708_181359_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	94.0	2.9e-51
WP_012840523.1|181661_182117_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	99.3	3.6e-80
WP_000348364.1|182275_183754_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.6	2.8e-283
WP_000778528.1|183758_184760_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.3	5.3e-185
WP_000718107.1|184756_185014_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672013.1|185079_185553_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.7	7.2e-84
WP_001822900.1|185557_186304_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.8	1.4e-142
WP_000109906.1|186681_188274_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933820.1|188645_189842_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.5	4.3e-218
WP_000366163.1|189963_190872_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	100.0	3.4e-138
WP_000453306.1|191083_191917_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	99.3	7.8e-158
WP_000623470.1|193913_194267_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	94.0	3.8e-21
WP_001200542.1|194263_194629_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091442.1|194884_195187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|195446_196160_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168903.1|196599_197235_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030469.1|197530_197974_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	98.6	2.4e-57
WP_001153742.1|197960_198404_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000384171.1|199185_199410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|199685_200540_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000989121.1|200626_201919_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000221177.1|201918_202233_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	98.1	9.8e-53
WP_001261668.1|202755_204258_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	98.6	1.9e-29
WP_000384185.1|204750_205782_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	98.8	4.0e-196
WP_000493887.1|205788_206421_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	98.6	5.5e-111
WP_001159037.1|206431_207613_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.5	5.6e-226
WP_001008549.1|207625_208090_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	100.0	4.5e-70
WP_001196362.1|208211_209213_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.4	2.6e-184
WP_001790712.1|209324_209444_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000266096.1|209446_210274_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_000757543.1|210845_211247_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000764419.1|211369_211933_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|211929_212883_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025067.1|212992_214174_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	99.7	7.3e-218
WP_001108730.1|214464_216879_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.5	0.0e+00
WP_000836461.1|216900_217212_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_160177498.1|217537_224098_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.3	6.1e-306
WP_000285020.1|224214_225483_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	99.1	9.1e-57
>prophage 11
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	236888	242216	2806864		Staphylococcus_phage(50.0%)	3	NA	NA
WP_001091387.1|236888_237746_+	DUF1444 domain-containing protein	NA	A0A2H4PQY3	Staphylococcus_phage	100.0	6.8e-72
WP_001048368.1|237774_238371_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_000118314.1|238391_242216_+	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	47.0	2.6e-83
>prophage 12
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	250956	252663	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000862095.1|250956_252663_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	99.8	2.1e-274
>prophage 13
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	259267	261898	2806864	tRNA,protease	Cronobacter_phage(50.0%)	2	NA	NA
WP_000186029.1|259267_260530_+|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	2.7e-85
WP_001279338.1|260623_261898_-|protease	trypsin-like serine protease	protease	A0A1B1IRD3	uncultured_Mediterranean_phage	29.0	1.7e-10
>prophage 14
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	265667	269800	2806864		Staphylococcus_phage(50.0%)	4	NA	NA
WP_000808849.1|265667_267272_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	100.0	1.2e-114
WP_000291420.1|267258_268416_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000553924.1|268530_268977_-	OsmC family protein	NA	NA	NA	NA	NA
WP_000174280.1|269056_269800_+	glycerophosphoryl diester phosphodiesterase	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	30.0	4.9e-18
>prophage 15
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	287392	290590	2806864		Streptomyces_phage(100.0%)	1	NA	NA
WP_000226919.1|287392_290590_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	30.5	4.2e-135
>prophage 16
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	295523	297281	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001232648.1|295523_297281_+	pyruvate kinase	NA	A0A2H4PQU5	Staphylococcus_phage	100.0	2.6e-41
>prophage 17
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	302165	310329	2806864		Feldmannia_irregularis_virus(25.0%)	5	NA	NA
WP_000080028.1|302165_302870_+	response regulator transcription factor	NA	Q6XM27	Feldmannia_irregularis_virus	28.7	1.6e-07
WP_078097100.1|302869_304531_+	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	39.4	2.6e-35
WP_000849428.1|305029_306517_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038317.1|306810_309441_+	DNA polymerase I	NA	A8E2B3	Enterococcus_phage	33.0	6.1e-47
WP_001114454.1|309456_310329_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	39.1	2.6e-42
>prophage 18
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	314244	325396	2806864	tRNA,protease	Brevibacillus_phage(20.0%)	12	NA	NA
WP_000808621.1|314244_315165_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	29.4	8.1e-31
WP_001790562.1|315257_315380_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435132.1|315576_317514_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	36.0	7.8e-116
WP_000049145.1|317939_319433_+	amino acid permease	NA	NA	NA	NA	NA
WP_001791162.1|319661_320189_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
WP_001125540.1|320217_320418_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001138360.1|320464_320821_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_000032657.1|320962_321571_+	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001280022.1|321589_322519_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790560.1|322523_322634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000127573.1|322681_323983_+	trigger factor	NA	NA	NA	NA	NA
WP_000472302.1|324133_325396_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
>prophage 19
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	334963	337594	2806864	tRNA	Catovirus(100.0%)	1	NA	NA
WP_000425353.1|334963_337594_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
>prophage 20
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	347528	383141	2806864	tRNA	uncultured_Mediterranean_phage(18.75%)	31	NA	NA
WP_001005768.1|347528_348533_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019178.1|348534_349560_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|349582_350722_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|350740_351001_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|351275_353555_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000595011.1|353757_356031_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.3	8.1e-64
WP_000364542.1|356052_356571_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_001058587.1|356998_359188_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000869983.1|359199_359652_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_000717800.1|359648_360524_+	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000590826.1|360984_362247_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000044799.1|362262_364029_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_001790559.1|364361_364490_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000682646.1|364489_365263_+|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_000102729.1|365423_366698_-	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.4e-105
WP_000704122.1|366782_367205_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000752909.1|367304_367487_+	CsbD family protein	NA	NA	NA	NA	NA
WP_000009238.1|367526_367673_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985878.1|367909_368923_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000409157.1|369234_370377_+	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.8	5.4e-32
WP_000066097.1|370377_371496_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000567017.1|372190_372859_+	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_001283312.1|372860_375338_+	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000734075.1|375680_378311_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_000426912.1|378373_378634_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_000939059.1|378637_379066_+	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_000134779.1|379080_379389_+	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_000342258.1|379673_380312_+	O-methyltransferase	NA	A0A2P1JQT7	Mycobacterium_phage	28.8	3.2e-10
WP_000137774.1|380314_381238_+	U32 family peptidase	NA	NA	NA	NA	NA
WP_000848304.1|381249_382518_+	U32 family peptidase	NA	Q6DW11	Phage_TP	31.7	4.0e-36
WP_000648617.1|382517_383141_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	41.1	2.8e-35
>prophage 21
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	389813	391034	2806864		Lactococcus_phage(100.0%)	1	NA	NA
WP_000542320.1|389813_391034_+	Fic family protein	NA	Q9AZ49	Lactococcus_phage	33.3	2.2e-52
>prophage 22
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	399820	405984	2806864		Bacillus_phage(33.33%)	5	NA	NA
WP_000439693.1|399820_400282_+	ComE operon protein 2	NA	A7KUY9	Bacillus_phage	58.8	3.6e-35
WP_000953309.1|400340_402488_+	DNA internalization-related competence protein ComEC/Rec2	NA	Q332C0	Clostridium_botulinum_C_phage	32.2	1.6e-32
WP_001282563.1|402544_403519_+	DNA polymerase III subunit delta	NA	NA	NA	NA	NA
WP_001274017.1|403563_403815_-	30S ribosomal protein S20	NA	NA	NA	NA	NA
WP_000368338.1|404160_405984_+	elongation factor 4	NA	A0A1S5SF82	Streptococcus_phage	25.1	6.1e-22
>prophage 23
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	409478	412586	2806864		Micromonas_pusilla_virus(50.0%)	2	NA	NA
WP_000034716.1|409478_411311_+	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	46.5	4.4e-137
WP_001119021.1|411446_412586_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	25.8	1.2e-26
>prophage 24
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	419056	420004	2806864		Rhizobium_phage(100.0%)	1	NA	NA
WP_001117767.1|419056_420004_+	PhoH family protein	NA	L7TP00	Rhizobium_phage	46.8	6.4e-47
>prophage 25
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	423057	436803	2806864	tRNA	Klosneuvirus(28.57%)	13	NA	NA
WP_001030080.1|423057_424449_-|tRNA	glycine--tRNA ligase	tRNA	A0A1V0SIF1	Klosneuvirus	27.4	4.7e-46
WP_001797828.1|424783_425407_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000411298.1|425417_426236_+	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_001217257.1|426296_428114_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.3	7.9e-54
WP_001283055.1|428337_429444_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624577.1|429574_430252_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683940.1|430254_431355_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_160177504.1|431468_432815_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	34.0	2.4e-55
WP_000924220.1|432824_433715_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	36.0	3.4e-26
WP_001213908.1|433840_434626_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000564315.1|434667_435531_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_001095260.1|435517_435928_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000863556.1|436203_436803_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	54.7	9.2e-60
>prophage 26
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	442976	443600	2806864		Streptococcus_phage(100.0%)	1	NA	NA
WP_001223008.1|442976_443600_+	MBL fold metallo-hydrolase	NA	A0A1X9I5D3	Streptococcus_phage	37.1	1.6e-30
>prophage 27
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	449144	451956	2806864		Prochlorococcus_phage(100.0%)	2	NA	NA
WP_160177510.1|449144_450491_+	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA	E3SN07	Prochlorococcus_phage	38.9	2.5e-60
WP_000202188.1|450483_451956_+	glycine dehydrogenase subunit 2	NA	E3SN07	Prochlorococcus_phage	41.3	2.8e-81
>prophage 28
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	459456	466027	2806864		Indivirus(66.67%)	6	NA	NA
WP_001286928.1|459456_460794_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SD82	Indivirus	37.7	1.6e-43
WP_000159865.1|460786_461017_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_000183383.1|460994_461876_+	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	25.8	2.0e-10
WP_001124985.1|462307_462760_+	transcriptional regulator ArgR	NA	NA	NA	NA	NA
WP_000942210.1|462775_464455_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001291533.1|464605_466027_+	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	26.3	5.1e-40
>prophage 29
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	472856	474263	2806864		Synechococcus_phage(100.0%)	1	NA	NA
WP_000193707.1|472856_474263_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A222YX62	Synechococcus_phage	31.1	4.3e-31
>prophage 30
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	480689	482174	2806864		Cyanophage(100.0%)	1	NA	NA
WP_000105070.1|480689_482174_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	37.8	2.4e-80
>prophage 31
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	485701	497311	2806864		Klosneuvirus(16.67%)	12	NA	NA
WP_001171335.1|485701_486610_-	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	32.0	4.4e-05
WP_000365240.1|486691_487234_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000392691.1|487338_487788_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_000447733.1|487836_488724_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	31.1	5.6e-37
WP_001183429.1|488801_489308_-	DUF309 domain-containing protein	NA	NA	NA	NA	NA
WP_000273371.1|489399_490131_+	segregation and condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	21.8	7.9e-05
WP_000368656.1|490123_490666_+	SMC-Scp complex subunit ScpB	NA	NA	NA	NA	NA
WP_000159577.1|490658_491396_+	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000064078.1|491528_492254_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
WP_000987774.1|492234_493986_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.2	2.2e-21
WP_001557355.1|494229_495156_+	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033761.1|495148_497311_+	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	100.0	2.7e-109
>prophage 32
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	501737	504416	2806864		Bacillus_phage(50.0%)	3	NA	NA
WP_001151997.1|501737_501986_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001163801.1|502093_503047_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000902099.1|503036_504416_+	ATP-dependent DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	33.6	1.4e-55
>prophage 33
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	513840	519307	2806864		Bacillus_phage(25.0%)	7	NA	NA
WP_001043863.1|513840_514113_+	DNA-binding protein HU	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000450555.1|514543_515116_+	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_000774684.1|515118_515844_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_001817755.1|515860_516805_+	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000442480.1|516896_517346_+	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_000789522.1|517554_517755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001269921.1|518140_519307_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	31.8	5.8e-34
>prophage 34
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	522969	523545	2806864		Bacillus_virus(100.0%)	1	NA	NA
WP_000005212.1|522969_523545_+	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.1e-08
>prophage 35
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	526917	534423	2806864	tRNA	unidentified_phage(25.0%)	5	NA	NA
WP_000361540.1|526917_528120_+|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	43.3	4.2e-35
WP_160177516.1|528106_529078_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000525078.1|529101_531795_+	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000858779.1|532116_533409_+|tRNA	asparagine--tRNA ligase	tRNA	M1PB22	Moumouvirus	31.3	8.7e-55
WP_000362218.1|533736_534423_+	DnaD domain-containing protein	NA	Q938N2	Temperate_phage	32.6	1.2e-07
>prophage 36
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	538163	538790	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_001108889.1|538163_538790_-	Holliday junction resolvase RecU	NA	A0A1C8E9C3	Bacillus_phage	35.5	1.7e-24
>prophage 37
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	548115	548994	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_153906651.1|548115_548994_+	5'-3' exonuclease	NA	S5M4P0	Bacillus_phage	29.5	2.3e-19
>prophage 38
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	587841	597231	2806864		Staphylococcus_phage(60.0%)	13	NA	NA
WP_000282171.1|587841_588546_-	queuosine precursor transporter	NA	A0A2H4J2N7	uncultured_Caudovirales_phage	23.8	8.4e-12
WP_001795441.1|588790_588985_+	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_000691942.1|588996_589248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000404645.1|589285_590410_+	virulence factor C	NA	NA	NA	NA	NA
WP_000995287.1|590425_590863_+	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA	NA
WP_000934894.1|591286_592243_+	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	85.2	1.6e-167
WP_000175746.1|592442_592922_+	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	79.9	2.0e-73
WP_000166059.1|592936_593776_+	fatty acid kinase FakB2	NA	A0A0N9SI50	Staphylococcus_phage	77.3	2.3e-48
WP_000159900.1|593861_594395_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_000913317.1|594387_594816_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_000473653.1|594827_595328_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_000801007.1|595327_595549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000342132.1|595740_597231_+	S41 family peptidase	NA	A0A0R6PIZ1	Moraxella_phage	30.5	2.9e-22
>prophage 39
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	600640	602652	2806864		Bacillus_phage(50.0%)	2	NA	NA
WP_000192137.1|600640_601300_+	response regulator transcription factor ArlR	NA	W8CYM9	Bacillus_phage	33.8	1.1e-34
WP_000166801.1|601296_602652_+	sensor histidine kinase ArlS	NA	A0A1V0SGX0	Hokovirus	27.8	3.5e-14
>prophage 40
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	608817	609609	2806864		Halovirus(100.0%)	1	NA	NA
WP_001185421.1|608817_609609_+	MoxR family ATPase	NA	R4TG24	Halovirus	34.2	3.3e-12
>prophage 41
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	613149	618180	2806864	lysis	Lactobacillus_phage(33.33%)	7	NA	NA
WP_000138413.1|613149_614286_-	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	28.3	7.4e-34
WP_001788788.1|614317_614947_-|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	lysis	NA	NA	NA	NA
WP_001215907.1|614965_615235_-	acylphosphatase	NA	NA	NA	NA	NA
WP_000269923.1|615397_615706_+	DUF1033 family protein	NA	NA	NA	NA	NA
WP_000809131.1|615876_616077_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	8.4e-18
WP_000876201.1|616273_616675_+	sarA expression modulator protein Msa	NA	NA	NA	NA	NA
WP_000216946.1|616914_618180_-	diaminopimelate decarboxylase	NA	A0A0P0YM38	Yellowstone_lake_phycodnavirus	23.2	6.2e-13
>prophage 42
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	626227	627829	2806864		Klosneuvirus(100.0%)	1	NA	NA
WP_000942303.1|626227_627829_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.7	5.5e-51
>prophage 43
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	632918	636372	2806864		Indivirus(50.0%)	3	NA	NA
WP_000079447.1|632918_633770_+	phosphate ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	8.9e-16
WP_000974847.1|633776_634418_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_000077571.1|634557_636372_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	47.1	5.1e-154
>prophage 44
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	639786	640488	2806864		Tupanvirus(100.0%)	1	NA	NA
WP_000571259.1|639786_640488_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	30.3	2.0e-13
>prophage 45
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	648586	650941	2806864		Acinetobacter_phage(100.0%)	3	NA	NA
WP_000153613.1|648586_649369_-	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	35.9	2.7e-27
WP_000173833.1|649370_650369_-	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	34.9	8.5e-34
WP_000604816.1|650374_650941_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	32.1	1.3e-23
>prophage 46
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	655259	656522	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000283016.1|655259_656522_-	Y-family DNA polymerase	NA	O64031	Bacillus_phage	44.3	2.6e-96
>prophage 47
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	666181	670575	2806864		Bacillus_phage(50.0%)	2	NA	NA
WP_001289562.1|666181_668584_-	DNA topoisomerase IV subunit A	NA	A0A172JHV7	Bacillus_phage	32.4	7.9e-94
WP_160177629.1|668583_670575_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	40.5	8.0e-116
>prophage 48
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	676566	678213	2806864		Vibrio_phage(100.0%)	1	NA	NA
WP_001088978.1|676566_678213_-	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.4	2.5e-22
>prophage 49
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	681882	683004	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000691301.1|681882_683004_-	exonuclease SbcCD subunit D	NA	A0A1X9I9U0	Staphylococcus_phage	22.7	4.3e-10
>prophage 50
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	687154	692810	2806864		Phage_Wrath(25.0%)	7	NA	NA
WP_001208755.1|687154_687778_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	63.8	5.9e-17
WP_000380730.1|688157_689021_-	CAP domain-containing protein	NA	U5Q0C0	Bacillus_phage	41.5	9.1e-16
WP_001791425.1|689094_689199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000688122.1|689195_690173_-	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	99.7	8.0e-186
WP_001085655.1|690329_690599_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_001265708.1|691052_691202_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_000082539.1|691292_692810_-	catalase	NA	A0A2K9L0T1	Tupanvirus	43.2	2.3e-91
>prophage 51
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	702948	707224	2806864		Bacillus_phage(50.0%)	6	NA	NA
WP_000841351.1|702948_703482_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	43.5	3.4e-21
WP_001027143.1|703620_703809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000202390.1|703921_704524_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000670307.1|704520_705612_-	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000603970.1|705615_706347_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000593436.1|706315_707224_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	25.9	3.1e-22
>prophage 52
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	711608	715910	2806864	head	Staphylococcus_phage(80.0%)	8	NA	NA
WP_000899334.1|711608_711845_-|head	phage head morphogenesis protein	head	Q4ZE35	Staphylococcus_virus	70.6	2.3e-22
WP_000956747.1|711890_712142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000477492.1|712269_712374_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|712884_713070_-	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_001788716.1|713493_713604_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001002340.1|714303_714510_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_001795785.1|714801_715026_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	72.5	5.0e-19
WP_001793526.1|715712_715910_-	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	50.0	9.9e-11
>prophage 53
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	720979	721456	2806864		Fowlpox_virus(100.0%)	1	NA	NA
WP_000448078.1|720979_721456_+	glutathione peroxidase	NA	Q70H87	Fowlpox_virus	38.0	1.2e-22
>prophage 54
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	727398	733880	2806864		Acanthocystis_turfacea_Chlorella_virus(33.33%)	4	NA	NA
WP_001103743.1|727398_728217_-	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	35.1	2.4e-26
WP_001077635.1|728691_729234_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA	NA
WP_000516269.1|729239_731249_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	30.0	4.8e-60
WP_160177524.1|731261_733880_-	DNA mismatch repair protein MutS	NA	E3T5Q7	Cafeteria_roenbergensis_virus	23.7	3.8e-41
>prophage 55
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	743294	744338	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000368166.1|743294_744338_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	69.2	9.3e-124
>prophage 56
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	748536	754077	2806864		Bacillus_virus(33.33%)	4	NA	NA
WP_000664775.1|748536_749823_-	insulinase family protein	NA	G3MBJ8	Bacillus_virus	28.4	7.9e-16
WP_000089941.1|749822_751088_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	26.8	1.2e-40
WP_001293306.1|751118_751832_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001811366.1|751836_754077_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	47.7	6.9e-84
>prophage 57
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	759217	771030	2806864	tRNA	Klosneuvirus(33.33%)	9	NA	NA
WP_000864185.1|759217_760189_-	riboflavin biosynthesis protein RibF	NA	A0A1V0SJE1	Klosneuvirus	32.1	1.7e-07
WP_000282298.1|760203_761121_-|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
WP_000097322.1|761289_761640_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_000043635.1|762025_764143_-	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	25.1	2.4e-25
WP_000020853.1|764147_764465_-	YlxQ family RNA-binding protein	NA	NA	NA	NA	NA
WP_000727423.1|764461_764746_-	YlxR family protein	NA	NA	NA	NA	NA
WP_000097460.1|764766_765942_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000036633.1|765962_766430_-	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001801936.1|766719_771030_-	DNA polymerase III subunit alpha	NA	A0A0A8WJ41	Clostridium_phage	41.2	3.5e-23
>prophage 58
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	775303	776074	2806864		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000473699.1|775303_776074_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.5	7.3e-25
>prophage 59
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	780853	794525	2806864	tRNA,protease	Erwinia_phage(16.67%)	11	NA	NA
WP_000379054.1|780853_782257_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IDZ7	Erwinia_phage	25.6	4.9e-27
WP_000072681.1|782322_782868_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_001015601.1|782864_783761_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	31.9	3.6e-31
WP_000195254.1|784178_785486_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_001557331.1|785641_787717_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	39.2	1.7e-105
WP_000593194.1|787890_788763_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000672869.1|788935_790180_-	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA	NA
WP_001041666.1|790207_791326_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A1W6JQB6	Staphylococcus_phage	61.1	9.5e-50
WP_000110253.1|791552_792461_-	succinate--CoA ligase subunit alpha	NA	A0A2K9L1S3	Tupanvirus	33.2	3.0e-17
WP_001020801.1|792482_793649_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA	NA
WP_000176393.1|793757_794525_-	ribonuclease HII	NA	G9E3X7	Emiliania_huxleyi_virus	44.1	2.5e-25
>prophage 60
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	807909	810159	2806864		Acanthamoeba_polyphaga_mimivirus(33.33%)	3	NA	NA
WP_000043237.1|807909_808641_-	ribonuclease III	NA	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	28.8	5.9e-24
WP_000426914.1|808756_808990_-	acyl carrier protein	NA	E3SSM9	Prochlorococcus_phage	63.3	1.6e-07
WP_000167269.1|809424_810159_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.3	3.1e-17
>prophage 61
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	820529	822524	2806864		Moumouvirus(100.0%)	1	NA	NA
WP_001581575.1|820529_822524_-	serine/threonine protein kinase Stk1	NA	M1PCM5	Moumouvirus	34.8	5.5e-24
>prophage 62
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	825671	826607	2806864	tRNA	Prochlorococcus_phage(100.0%)	1	NA	NA
WP_000161291.1|825671_826607_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	28.0	4.7e-10
>prophage 63
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	831619	833876	2806864		Methanothermobacter_phage(50.0%)	3	NA	NA
WP_000722165.1|831619_832819_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.9	1.2e-42
WP_000933956.1|833034_833253_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000368226.1|833252_833876_-	guanylate kinase	NA	A0A143DIC6	Abalone_herpesvirus	34.1	1.0e-21
>prophage 64
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	837190	837802	2806864		Pandoravirus(100.0%)	1	NA	NA
WP_001040248.1|837190_837802_-	orotate phosphoribosyltransferase	NA	S4VS55	Pandoravirus	33.8	1.6e-27
>prophage 65
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	841769	846380	2806864		Halovirus(33.33%)	4	NA	NA
WP_001190913.1|841769_842870_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	36.7	5.6e-63
WP_000767028.1|842871_844146_-	dihydroorotase	NA	NA	NA	NA	NA
WP_160177526.1|844163_845045_-	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	33.6	5.0e-30
WP_001178619.1|845072_846380_-	uracil permease	NA	Q9KX94	Enterobacteria_phage	34.0	3.3e-54
>prophage 66
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	850844	853598	2806864	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000384691.1|850844_853598_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2I2L3Y0	Orpheovirus	28.0	3.6e-90
>prophage 67
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	873181	873370	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001245796.1|873181_873370_-	hypothetical protein	NA	A0A0K1LL29	Staphylococcus_phage	85.2	2.5e-19
>prophage 68
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	882386	884346	2806864		Staphylococcus_phage(100.0%)	3	NA	NA
WP_001802045.1|882386_882611_-	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	71.4	5.6e-18
WP_000765708.1|882567_882714_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000857488.1|883386_884346_+	beta-channel forming cytolysin	NA	A0A2H4PQH7	Staphylococcus_phage	30.3	7.4e-35
>prophage 69
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	899920	904478	2806864		Staphylococcus_phage(33.33%)	3	NA	NA
WP_001018928.1|899920_900235_-	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001249272.1|900407_902756_-	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.1	3.2e-15
WP_000161938.1|902765_904478_-	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	6.8e-15
>prophage 70
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	909480	910539	2806864	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_000003566.1|909480_910539_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
>prophage 71
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	922485	925393	2806864		uncultured_Mediterranean_phage(50.0%)	5	NA	NA
WP_000401377.1|922485_922968_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_001263796.1|922969_923512_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA	NA
WP_000814565.1|923581_923971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049150.1|923973_924228_-	YlbG family protein	NA	NA	NA	NA	NA
WP_000757575.1|924466_925393_+	glycerophosphodiester phosphodiesterase	NA	M1I1K8	Paramecium_bursaria_Chlorella_virus	26.2	2.2e-12
>prophage 72
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	936910	938758	2806864		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000182654.1|936910_938758_-	translational GTPase TypA	NA	A0A2K5B2A5	Erysipelothrix_phage	26.2	1.8e-21
>prophage 73
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	946890	955723	2806864		Mycoplasma_phage(25.0%)	9	NA	NA
WP_000433551.1|946890_947985_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	44.3	1.4e-37
WP_001020625.1|947997_948537_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000455597.1|948680_948956_-	UPF0223 family protein	NA	NA	NA	NA	NA
WP_000260117.1|949123_950530_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.2e-46
WP_000863439.1|950533_951826_-	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA	NA
WP_000068176.1|951916_952894_-	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA	NA
WP_000035320.1|952897_954010_-	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	A0A0K0KW14	Prochlorococcus_phage	27.8	1.4e-05
WP_000668336.1|954180_954807_-	cell-wall-binding lipoprotein	NA	NA	NA	NA	NA
WP_000957037.1|955171_955723_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.0	1.6e-13
>prophage 74
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	963253	967633	2806864		Bacillus_virus(50.0%)	5	NA	NA
WP_001289618.1|963253_963487_+	glutaredoxin family protein	NA	G3MBF0	Bacillus_virus	38.7	8.4e-09
WP_000040051.1|963723_965442_-	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_000437472.1|965444_965711_-	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_000505966.1|965864_966407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000685067.1|966460_967633_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	42.8	4.0e-75
>prophage 75
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	971064	985826	2806864		Prochlorococcus_phage(22.22%)	14	NA	NA
WP_000921965.1|971064_972465_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.3	1.1e-10
WP_000273253.1|972457_973264_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_001101899.1|973530_974778_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA	NA
WP_000709277.1|974799_976278_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	51.8	3.2e-77
WP_160177532.1|976292_976859_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	4.7e-29
WP_000030811.1|976861_977890_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.7	3.4e-62
WP_000483720.1|977882_979367_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	1.9e-45
WP_000032740.1|979345_981535_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.8	3.5e-141
WP_000666806.1|981527_982199_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000848350.1|982200_982464_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|982463_983168_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_001010413.1|983171_984296_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|984282_984765_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_000225836.1|984965_985826_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.8	4.4e-39
>prophage 76
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	996280	1000027	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001074534.1|996280_1000027_+	bifunctional autolysin	NA	A0A1J0MFB0	Staphylococcus_phage	37.6	1.1e-54
>prophage 77
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1003695	1004724	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000676539.1|1003695_1004724_+	Glu-specific serine endopeptidase SspA	NA	A0A2H4PQP7	Staphylococcus_phage	32.3	6.3e-16
>prophage 78
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1013029	1016750	2806864		Enterococcus_phage(50.0%)	7	NA	NA
WP_001788574.1|1013029_1013320_+	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_001790177.1|1013383_1013515_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001081351.1|1013560_1014520_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000766009.1|1015007_1015364_+	DoxX family protein	NA	NA	NA	NA	NA
WP_001792054.1|1015452_1015590_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA	NA
WP_001795266.1|1015730_1016021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000571167.1|1016108_1016750_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	1.7e-19
>prophage 79
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1026944	1032155	2806864	protease	Pithovirus(33.33%)	3	NA	NA
WP_001795272.1|1026944_1029269_-|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000928413.1|1029487_1030291_-	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_001049950.1|1030592_1032155_-	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	1.7e-36
>prophage 80
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1051087	1052896	2806864		Streptococcus_phage(100.0%)	1	NA	NA
WP_000082725.1|1051087_1052896_-	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.5	5.5e-47
>prophage 81
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1058708	1060678	2806864		Bacillus_virus(100.0%)	2	NA	NA
WP_000427767.1|1058708_1059689_-	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.5	1.3e-15
WP_001067052.1|1059691_1060678_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.6	1.4e-15
>prophage 82
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1064329	1066343	2806864		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_000786734.1|1064329_1065271_-	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	1.6e-05
WP_000140050.1|1065260_1066343_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
>prophage 83
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1074934	1081744	2806864		Micromonas_sp._RCC1109_virus(33.33%)	4	NA	NA
WP_000619360.1|1074934_1076080_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.0	1.5e-05
WP_001047069.1|1076189_1077059_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000353954.1|1077117_1079727_-	ATP-dependent chaperone ClpB	NA	A0A223W0B1	Agrobacterium_phage	34.3	5.5e-117
WP_001044230.1|1079929_1081744_-	O-acetyltransferase	NA	B5WZU0	Pseudomonas_phage	33.9	6.7e-37
>prophage 84
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1086863	1090517	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000154921.1|1086863_1090517_-	helicase-exonuclease AddAB subunit AddA	NA	A7KV33	Bacillus_phage	24.5	2.0e-24
>prophage 85
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1100671	1107853	2806864		Staphylococcus_phage(33.33%)	6	NA	NA
WP_000185319.1|1100671_1101601_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	37.9	3.7e-39
WP_000138487.1|1102127_1103372_-	NAD-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000167314.1|1103480_1104671_-	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	29.7	1.3e-33
WP_000838029.1|1104978_1106106_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_001067294.1|1106467_1106845_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_000035058.1|1107259_1107853_-	peptidyl-prolyl cis-trans isomerase	NA	A0A076FI46	Aureococcus_anophage	41.3	1.1e-25
>prophage 86
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1117774	1121402	2806864		Mycoplasma_phage(50.0%)	3	NA	NA
WP_001009692.1|1117774_1119250_-	cytosol aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	34.9	4.5e-47
WP_000046076.1|1119380_1120589_-	NADH dehydrogenase	NA	NA	NA	NA	NA
WP_001143495.1|1121042_1121402_-	iron-sulfur cluster assembly accessory protein	NA	A0A2H4N7M3	Lake_Baikal_phage	38.6	2.7e-14
>prophage 87
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1125445	1128114	2806864		Pseudomonas_phage(50.0%)	2	NA	NA
WP_000613541.1|1125445_1126660_-	PG:teichoic acid D-alanyltransferase DltB	NA	A0A125RNP0	Pseudomonas_phage	26.1	8.5e-20
WP_000129659.1|1126656_1128114_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9L3I8	Tupanvirus	28.5	2.6e-39
>prophage 88
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1139904	1187189	2806864	plate,portal,head,capsid,holin,tail,terminase,integrase	Staphylococcus_phage(77.61%)	70	1132915:1132930	1189587:1189602
1132915:1132930	attL	CTTTTGGTAATTCTTT	NA	NA	NA	NA
WP_000382163.1|1139904_1140105_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1140091_1140202_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1140272_1140425_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001035620.1|1140799_1141357_+	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001141517.1|1141416_1142829_-	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_000351119.1|1142815_1143091_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_015978410.1|1143146_1143542_-	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	100.0	2.1e-68
WP_053507572.1|1143547_1144720_-|plate	BppU family phage baseplate upper protein	plate	B2ZZ03	Staphylococcus_phage	99.7	1.4e-197
WP_064305818.1|1144732_1146607_-	CHAP domain-containing protein	NA	Q4ZBX1	Staphylococcus_virus	98.9	0.0e+00
WP_000466777.1|1146743_1147043_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_000782200.1|1147083_1147257_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705917.1|1147259_1147637_-	DUF2977 domain-containing protein	NA	E0Y3M4	Staphylococcus_virus	100.0	2.6e-60
WP_072464657.1|1147636_1149460_-|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	99.3	3.9e-295
WP_160177536.1|1149459_1151358_-	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	96.7	0.0e+00
WP_001122001.1|1151370_1153257_-	peptidase	NA	Q4ZBQ3	Staphylococcus_phage	100.0	0.0e+00
WP_160177538.1|1153267_1154209_-|tail	phage tail protein	tail	A1KXA7	Staphylococcus_virus	99.7	2.6e-181
WP_160177540.1|1154223_1157109_-|terminase	terminase	terminase	A0A2H4JGV1	uncultured_Caudovirales_phage	98.1	0.0e+00
WP_000880588.1|1157112_1157397_-	hypothetical protein	NA	A0A0E3TAI0	Staphylococcus_phage	98.9	1.5e-44
WP_000134337.1|1157441_1157948_-	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_160177542.1|1158014_1158572_-|tail	phage tail protein	tail	Q4ZBQ8	Staphylococcus_phage	99.5	4.1e-102
WP_000270189.1|1158572_1158998_-	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	99.3	6.1e-74
WP_001151323.1|1159010_1159418_-	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000483041.1|1159404_1159740_-|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_000177351.1|1159751_1160102_-|head,tail	phage head-tail adapter protein	head,tail	A0A0H3U2R5	Staphylococcus_phage	100.0	1.9e-60
WP_000235168.1|1160262_1161177_-|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_001019220.1|1161193_1161778_-	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	99.5	2.8e-77
WP_000346033.1|1161880_1162087_-	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	100.0	3.2e-28
WP_000184133.1|1162088_1163042_-	hypothetical protein	NA	A0A0N7E0U6	Staphylococcus_phage	99.7	6.6e-177
WP_000177422.1|1163010_1164435_-|portal	phage portal protein	portal	Q4ZBZ7	Staphylococcus_virus	100.0	6.2e-272
WP_001037578.1|1164431_1165655_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	100.0	7.5e-242
WP_000594087.1|1165647_1166142_-	hypothetical protein	NA	A0A0N9BAX3	Staphylococcus_phage	99.4	2.2e-83
WP_000286968.1|1166496_1166898_-	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_160177544.1|1166898_1167087_-	transcriptional regulator	NA	A0A2H4PQK0	Staphylococcus_phage	98.4	1.8e-25
WP_001125015.1|1167074_1167275_-	hypothetical protein	NA	A0A2I6PF22	Staphylococcus_phage	100.0	1.8e-28
WP_000195837.1|1167249_1167438_-	DUF1381 domain-containing protein	NA	Q4ZCG4	Staphylococcus_virus	100.0	1.6e-26
WP_001282074.1|1167434_1167680_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_160177545.1|1167716_1168250_-	dUTP pyrophosphatase	NA	A0A2I6PDQ3	Staphylococcus_phage	98.9	1.8e-94
WP_050957636.1|1168242_1168485_-	hypothetical protein	NA	A0A2I6PDB8	Staphylococcus_phage	100.0	1.9e-35
WP_160177547.1|1168719_1169076_-	acetyltransferase	NA	A0A0F6N3K4	Staphylococcus_phage	96.8	9.4e-44
WP_160177549.1|1169075_1169480_-	hypothetical protein	NA	A0A0H4IPW3	Staphylococcus_phage	98.5	6.0e-71
WP_160177550.1|1169493_1169742_-	hypothetical protein	NA	C8CH00	Staphylococcus_phage	95.1	5.7e-40
WP_160177551.1|1169742_1170105_-	hypothetical protein	NA	R4II61	Staphylococcus_phage	96.7	7.8e-46
WP_160177553.1|1170105_1170291_-	DUF3113 family protein	NA	A0A2I6PDN7	Staphylococcus_phage	93.4	1.5e-24
WP_031860309.1|1170290_1170698_-	RusA family crossover junction endodeoxyribonuclease	NA	A9CR74	Staphylococcus_phage	99.3	1.1e-72
WP_001123681.1|1170707_1170929_-	DUF3269 family protein	NA	A0A2H4PQI9	Staphylococcus_phage	100.0	2.2e-35
WP_000256594.1|1170942_1171101_-	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	98.1	4.5e-22
WP_000803062.1|1171094_1171874_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_122895904.1|1171883_1172627_-	alpha/beta hydrolase	NA	Q6R839	Staphylococcus_virus	85.4	2.0e-104
WP_061713847.1|1172690_1173539_+	DUF4393 domain-containing protein	NA	W5R9J9	Staphylococcus_phage	99.3	4.2e-159
WP_061713846.1|1173645_1174320_-	hypothetical protein	NA	A9CR65	Staphylococcus_phage	97.8	1.4e-128
WP_015988663.1|1174331_1174850_-	hypothetical protein	NA	A9CR64	Staphylococcus_phage	100.0	1.0e-83
WP_061713844.1|1174879_1175653_-	AAA family ATPase	NA	Q4ZDY6	Staphylococcus_virus	99.6	4.7e-141
WP_000002516.1|1175652_1176132_-	siphovirus Gp157 family protein	NA	A0A0H4J328	Staphylococcus_phage	100.0	1.1e-82
WP_160177555.1|1176146_1176407_-	DUF1108 family protein	NA	Q4ZBM7	Staphylococcus_phage	97.7	4.4e-43
WP_000066011.1|1176500_1176662_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000977378.1|1176654_1176876_-	hypothetical protein	NA	E0Y3P2	Staphylococcus_virus	100.0	1.5e-31
WP_000993183.1|1176889_1177339_-	hypothetical protein	NA	A0A0H3U2S4	Staphylococcus_phage	100.0	2.3e-79
WP_000187184.1|1177378_1177603_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_148844471.1|1177603_1178383_-	phage antirepressor	NA	M1RZB2	Staphylococcus_phage	92.6	1.8e-132
WP_000394020.1|1178570_1178774_-	hypothetical protein	NA	A0A0E3XBM9	Staphylococcus_phage	100.0	4.7e-32
WP_001121116.1|1178787_1179024_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAY2	Staphylococcus_phage	100.0	1.5e-37
WP_000333630.1|1179175_1179490_+	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_000525004.1|1179502_1179964_+	hypothetical protein	NA	A0A2K9VBR7	Staphylococcus_phage	100.0	1.2e-83
WP_000825944.1|1179981_1180485_+	hypothetical protein	NA	A9CR44	Staphylococcus_phage	98.8	8.3e-46
WP_001145726.1|1180547_1181597_+|integrase	site-specific integrase	integrase	A1KWY3	Staphylococcus_virus	99.7	4.5e-203
WP_001074405.1|1181664_1183062_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|1183212_1183677_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807663.1|1183666_1184908_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.8	8.2e-111
WP_000205567.1|1185022_1186330_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000168845.1|1186427_1187189_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
1189587:1189602	attR	CTTTTGGTAATTCTTT	NA	NA	NA	NA
>prophage 89
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1190676	1191702	2806864		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571213.1|1190676_1191702_-	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	9.4e-28
>prophage 90
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1195018	1200196	2806864		Streptococcus_phage(50.0%)	8	NA	NA
WP_000589549.1|1195018_1195375_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	46.6	4.7e-19
WP_001147952.1|1195518_1195839_+	thioredoxin family protein	NA	A0A1X9I9P5	Staphylococcus_phage	36.4	3.1e-06
WP_000422908.1|1195989_1196529_-	nitroreductase	NA	NA	NA	NA	NA
WP_000150011.1|1196611_1197328_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	30.1	1.5e-16
WP_000974460.1|1197475_1197898_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_000569884.1|1198296_1198791_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000255551.1|1198945_1199563_+	amino acid transporter	NA	NA	NA	NA	NA
WP_001802951.1|1199635_1200196_-	histidine phosphatase family protein	NA	A0A1X9IGJ2	Lactococcus_phage	40.4	3.8e-31
>prophage 91
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1203596	1204840	2806864		Lactococcus_phage(50.0%)	2	NA	NA
WP_001059082.1|1203596_1203797_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	70.8	1.4e-20
WP_000141557.1|1204153_1204840_-	thermonuclease family protein	NA	A0A1P8CWK6	Bacillus_phage	54.2	1.7e-33
>prophage 92
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1214154	1223031	2806864		Staphylococcus_phage(50.0%)	9	NA	NA
WP_000757397.1|1214154_1214883_+	DUF5067 domain-containing protein	NA	H9A0X8	Staphylococcus_phage	37.5	1.3e-18
WP_001057759.1|1215074_1215221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058299.1|1215236_1215560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001085183.1|1216881_1217346_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	98.7	1.6e-80
WP_001050048.1|1217367_1219740_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.8	4.3e-92
WP_001165959.1|1219773_1220514_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_000556760.1|1220629_1220863_-	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_000785252.1|1220929_1221388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001121760.1|1221726_1223031_-	phosphopyruvate hydratase	NA	W6LP63	Streptococcus_phage	80.7	6.7e-196
>prophage 93
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1232314	1238244	2806864		Streptococcus_phage(40.0%)	5	NA	NA
WP_001049165.1|1232314_1232902_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.3	8.2e-53
WP_000006551.1|1233465_1234410_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.6	3.1e-54
WP_001248939.1|1234520_1235516_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	41.9	4.8e-53
WP_000369722.1|1235512_1236424_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	36.1	1.1e-08
WP_000134963.1|1237308_1238244_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	49.2	2.9e-84
>prophage 94
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1242691	1245538	2806864		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000662677.1|1242691_1245538_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	57.2	0.0e+00
>prophage 95
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1248856	1249696	2806864		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000753319.1|1248856_1249696_-	CHAP domain-containing protein	NA	A0A2H4J675	uncultured_Caudovirales_phage	42.2	3.5e-12
>prophage 96
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1255774	1261480	2806864		Streptococcus_phage(66.67%)	5	NA	NA
WP_001557172.1|1255774_1256857_-	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	35.2	9.9e-44
WP_064129367.1|1257220_1258087_-	DegV family protein	NA	NA	NA	NA	NA
WP_000192949.1|1258230_1258872_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	47.7	5.3e-37
WP_000258150.1|1259036_1260092_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_000460983.1|1260409_1261480_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	1.3e-16
>prophage 97
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1270759	1294232	2806864		uncultured_Caudovirales_phage(35.71%)	19	NA	NA
WP_000616840.1|1270759_1271521_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	6.5e-18
WP_001245577.1|1271517_1272474_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|1272460_1273432_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|1273470_1273626_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|1273806_1274778_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855514.1|1274895_1277001_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|1276963_1277362_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068501.1|1278162_1279029_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|1279048_1279549_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|1279889_1281395_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_031760357.1|1281472_1281574_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429006.1|1281664_1282582_+	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	2.1e-07
WP_000197262.1|1283460_1284003_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000663030.1|1284341_1285400_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000180991.1|1285639_1287154_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA	NA
WP_000589248.1|1287146_1288124_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.3	7.1e-25
WP_000983677.1|1288345_1290127_-	DNA helicase RecQ	NA	A0A2P1EM61	Moumouvirus	37.0	6.5e-77
WP_000525106.1|1290138_1292022_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.6	2.0e-55
WP_000098285.1|1292291_1294232_-	polyglycerol-phosphate lipoteichoic acid synthase LtaS	NA	W6LM83	Streptococcus_phage	39.5	1.3e-110
>prophage 98
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1297371	1307218	2806864		Pandoravirus(12.5%)	12	NA	NA
WP_001217796.1|1297371_1298523_-	anthranilate synthase component I family protein	NA	S4VNU7	Pandoravirus	35.7	6.0e-23
WP_000604514.1|1298506_1299100_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|1299450_1300119_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|1300120_1300540_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|1300543_1301257_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000604990.1|1301355_1301940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093562.1|1302219_1302660_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1303002_1303476_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1303450_1304137_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244415.1|1304136_1305192_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.8	3.6e-14
WP_000702781.1|1305263_1306247_-	glycosyltransferase family 2 protein	NA	A0A192Y8W7	Salmonella_phage	43.3	1.5e-62
WP_000931238.1|1306378_1307218_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	41.5	9.6e-55
>prophage 99
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1318816	1320190	2806864		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_000952038.1|1318816_1320190_-	deoxyribodipyrimidine photo-lyase	NA	A0A167RC11	Powai_lake_megavirus	33.6	2.3e-45
>prophage 100
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1325167	1331447	2806864		Bacillus_phage(33.33%)	6	NA	NA
WP_000857598.1|1325167_1326841_-	amino acid ABC transporter ATP-binding/permease protein	NA	W8CYL7	Bacillus_phage	23.2	3.4e-11
WP_000737160.1|1326837_1328469_-	ABC transporter ATP-binding protein/permease	NA	W5SAS9	Pithovirus	27.8	6.7e-12
WP_160177557.1|1328687_1329563_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_000358498.1|1329734_1330418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000148826.1|1330420_1330879_+	YaiI/YqxD family protein	NA	NA	NA	NA	NA
WP_000820897.1|1330880_1331447_+	TIGR00730 family Rossman fold protein	NA	A0A1G5S9X4	Enterococcus_phage	36.9	4.7e-21
>prophage 101
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1338237	1338711	2806864		Pandoravirus(100.0%)	1	NA	NA
WP_000833486.1|1338237_1338711_-	cupin	NA	A0A291AU44	Pandoravirus	39.4	1.6e-14
>prophage 102
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1343973	1344771	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000731644.1|1343973_1344771_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A223LD43	Bacillus_phage	30.2	1.2e-06
>prophage 103
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1349602	1350364	2806864		Planktothrix_phage(100.0%)	1	NA	NA
WP_000985996.1|1349602_1350364_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.8	7.2e-33
>prophage 104
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1354738	1355782	2806864		Acanthamoeba_polyphaga_mimivirus(100.0%)	1	NA	NA
WP_001030772.1|1354738_1355782_-	alpha/beta hydrolase	NA	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	26.6	2.0e-17
>prophage 105
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1362305	1363103	2806864		Planktothrix_phage(100.0%)	1	NA	NA
WP_001080809.1|1362305_1363103_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.7	1.1e-18
>prophage 106
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1366328	1370287	2806864		Bacillus_phage(33.33%)	3	NA	NA
WP_001581453.1|1366328_1368056_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	43.3	2.8e-109
WP_160177559.1|1368476_1369772_+	D-alanyl-D-alanine carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	26.9	2.0e-14
WP_000832260.1|1369888_1370287_-	glycerol-3-phosphate cytidylyltransferase	NA	A0A222YWT0	Streptomyces_phage	39.9	3.2e-16
>prophage 107
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1377221	1377965	2806864		Indivirus(100.0%)	1	NA	NA
WP_000894464.1|1377221_1377965_+	metal ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	29.7	1.2e-11
>prophage 108
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1390503	1391064	2806864	integrase	Streptococcus_phage(100.0%)	1	1384657:1384671	1394654:1394668
1384657:1384671	attL	TTTTGATACCATTTC	NA	NA	NA	NA
WP_001044915.1|1390503_1391064_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
WP_001044915.1|1390503_1391064_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A141E172	Streptococcus_phage	35.1	5.7e-19
1394654:1394668	attR	TTTTGATACCATTTC	NA	NA	NA	NA
>prophage 109
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1403892	1407246	2806864		Tupanvirus(50.0%)	3	NA	NA
WP_001200748.1|1403892_1404903_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	27.3	5.6e-33
WP_001792725.1|1405401_1405923_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000180234.1|1405950_1407246_-	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	27.9	1.2e-24
>prophage 110
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1414818	1416141	2806864		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_000860592.1|1414818_1416141_+	FAD-containing oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.8	2.6e-107
>prophage 111
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1427445	1428102	2806864		Elephant_endotheliotropic_herpesvirus(100.0%)	1	NA	NA
WP_001581437.1|1427445_1428102_-	uracil-DNA glycosylase	NA	U5U4C1	Elephant_endotheliotropic_herpesvirus	46.4	1.1e-45
>prophage 112
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1431743	1435064	2806864		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001100835.1|1431743_1433120_-	long-chain fatty acid--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	24.5	3.9e-21
WP_000347061.1|1433663_1435064_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	32.8	9.4e-55
>prophage 113
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1458415	1459078	2806864		Enterococcus_phage(100.0%)	1	NA	NA
WP_001067261.1|1458415_1459078_+	deoxynucleoside kinase	NA	A0A0M3UL55	Enterococcus_phage	37.4	1.4e-24
>prophage 114
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1465661	1466849	2806864		Emiliania_huxleyi_virus(100.0%)	1	NA	NA
WP_000250823.1|1465661_1466849_-	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.6	4.4e-45
>prophage 115
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1471397	1482351	2806864		Streptococcus_phage(33.33%)	6	NA	NA
WP_000090315.1|1471397_1473479_-	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	28.3	2.7e-66
WP_001137495.1|1473601_1474072_-	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_001142337.1|1474137_1474551_-	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_000031892.1|1474648_1474903_-	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA	NA
WP_001788197.1|1475039_1478636_-	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.6	3.3e-67
WP_000918667.1|1478799_1482351_-	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.3	2.1e-50
>prophage 116
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1486034	1490817	2806864	tRNA	Bacillus_virus(50.0%)	8	NA	NA
WP_001288302.1|1486034_1486583_-	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	33.5	8.6e-12
WP_001074473.1|1486595_1486778_-	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_001788193.1|1486833_1486977_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002955227.1|1487091_1487661_-	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_000664737.1|1487741_1488266_-	NYN domain-containing protein	NA	NA	NA	NA	NA
WP_000390332.1|1488265_1489012_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000370182.1|1489019_1489424_-	Mini-ribonuclease 3	NA	NA	NA	NA	NA
WP_000631969.1|1489416_1490817_-|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	31.8	1.2e-54
>prophage 117
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1496828	1499285	2806864	protease	Escherichia_phage(100.0%)	1	NA	NA
WP_000897132.1|1496828_1499285_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpC	protease	A0A1C3S747	Escherichia_phage	41.2	1.4e-133
>prophage 118
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1512912	1523183	2806864	tRNA	Catovirus(16.67%)	10	NA	NA
WP_001288202.1|1512912_1514400_-|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	41.1	2.1e-92
WP_001790128.1|1514452_1514545_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613722.1|1514938_1515415_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA	NA
WP_001154302.1|1515411_1515777_-	dihydroneopterin aldolase	NA	NA	NA	NA	NA
WP_000167944.1|1515754_1516558_-	dihydropteroate synthase	NA	A0A0B5J4J5	Pandoravirus	29.0	3.0e-21
WP_000057594.1|1516773_1517706_-	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	65.7	3.7e-108
WP_000148598.1|1517884_1518766_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_001167888.1|1518993_1521087_-	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	E5EQ50	Micromonas_sp._RCC1109_virus	42.7	4.0e-110
WP_000551283.1|1521343_1521883_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	29.8	6.5e-12
WP_001176709.1|1521887_1523183_-|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A1V0SI91	Klosneuvirus	24.5	4.8e-13
>prophage 119
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1532439	1534904	2806864		Hokovirus(50.0%)	2	NA	NA
WP_000933774.1|1532439_1533405_-	ribose-phosphate diphosphokinase	NA	A0A1V0SHF7	Hokovirus	35.4	6.1e-45
WP_001252543.1|1533551_1534904_-	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	30.4	8.3e-24
>prophage 120
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1540808	1543906	2806864	tRNA	Klosneuvirus(50.0%)	2	NA	NA
WP_001051129.1|1540808_1542782_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	36.2	1.5e-93
WP_000279926.1|1543066_1543906_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	45.8	2.7e-57
>prophage 121
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1547812	1548430	2806864		Streptococcus_phage(100.0%)	1	NA	NA
WP_001272126.1|1547812_1548430_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	48.3	9.2e-47
>prophage 122
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1557292	1558990	2806864		Streptococcus_virus(100.0%)	1	NA	NA
WP_001109040.1|1557292_1558990_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	42.3	1.9e-54
>prophage 123
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1575638	1576643	2806864		Lactobacillus_phage(100.0%)	1	NA	NA
WP_001170264.1|1575638_1576643_-	autolysin/adhesin Aaa	NA	A0A0A7NU10	Lactobacillus_phage	41.2	1.6e-24
>prophage 124
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1580971	1581877	2806864		Lactococcus_phage(100.0%)	1	NA	NA
WP_000634098.1|1580971_1581877_-	cysteine synthase family protein	NA	A0A1W6JIM2	Lactococcus_phage	39.7	3.8e-49
>prophage 125
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1607822	1610583	2806864		Staphylococcus_phage(100.0%)	2	NA	NA
WP_000072584.1|1607822_1609034_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	35.2	2.2e-44
WP_000028659.1|1609026_1610583_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	2.3e-288
>prophage 126
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1621878	1627327	2806864	transposase	Paenibacillus_phage(25.0%)	5	NA	NA
WP_000159787.1|1621878_1622151_+|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
WP_000041880.1|1622549_1623254_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.1	5.8e-29
WP_000551643.1|1623645_1624182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000424963.1|1624294_1625836_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000264071.1|1625860_1627327_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
>prophage 127
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1636287	1637811	2806864		Enterococcus_phage(100.0%)	1	NA	NA
WP_000930514.1|1636287_1637811_+	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.4e-40
>prophage 128
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1646125	1652454	2806864		Staphylococcus_phage(50.0%)	8	NA	NA
WP_000934799.1|1646125_1646629_-	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_001261460.1|1646649_1646946_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_001052484.1|1647189_1647381_+	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	80.0	1.1e-22
WP_001218732.1|1647466_1648564_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_000157348.1|1648575_1648779_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_000373073.1|1648808_1649690_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_001557587.1|1649843_1650689_-	ParB/RepB/Spo0J family partition protein	NA	A0A1C9EHW0	Gordonia_phage	34.4	1.6e-12
WP_000655692.1|1651350_1652454_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A0B5JD48	Pandoravirus	28.0	3.9e-11
>prophage 129
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1662392	1663235	2806864		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_000209551.1|1662392_1663235_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.2	3.8e-11
>prophage 130
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1684544	1687279	2806864		Bodo_saltans_virus(50.0%)	3	NA	NA
WP_000280799.1|1684544_1685567_-	lipoate--protein ligase	NA	A0A2H4UVX5	Bodo_saltans_virus	30.4	6.7e-10
WP_001191954.1|1685544_1686489_-	NAD-dependent deacetylase	NA	NA	NA	NA	NA
WP_000449069.1|1686478_1687279_-	protein-ADP-ribose hydrolase	NA	A0A2K9L8X2	Tupanvirus	43.4	5.8e-41
>prophage 131
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1691676	1736860	2806864	plate,portal,head,capsid,holin,tail,terminase,integrase,protease	Staphylococcus_phage(93.85%)	65	1691431:1691448	1736954:1736971
1691431:1691448	attL	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
WP_000971220.1|1691676_1692132_-	hypothetical protein	NA	B7T0L3	Staphylococcus_virus	100.0	2.7e-72
WP_000448197.1|1692128_1692716_-	hypothetical protein	NA	Q4ZBG7	Staphylococcus_virus	100.0	5.4e-97
WP_063456249.1|1693107_1694562_-	CHAP domain-containing protein	NA	A7TWL1	Staphylococcus_phage	99.4	2.2e-288
WP_000339146.1|1694573_1694876_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1695011_1695311_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|1695356_1695521_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1695513_1695903_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031767589.1|1695902_1697369_-|plate	BppU family phage baseplate upper protein	plate	Q8SDN8	Staphylococcus_virus	98.8	2.7e-254
WP_000429558.1|1697368_1699279_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1699294_1699585_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1699584_1701168_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1701176_1702001_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_160177581.1|1702000_1708177_-|tail	phage tail tape measure protein	tail	A0A2I6PDS2	Staphylococcus_phage	99.3	0.0e+00
WP_000438833.1|1708190_1708349_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589166.1|1708399_1708741_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.5e-54
WP_000169128.1|1708798_1709254_-	Ig domain-containing protein	NA	A0A2I6PF45	Staphylococcus_phage	100.0	1.3e-77
WP_000807536.1|1709345_1709987_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1710021_1710417_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_160177583.1|1710417_1710819_-	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	98.5	2.3e-67
WP_000395498.1|1710815_1711148_-	hypothetical protein	NA	A0A2I6PES3	Staphylococcus_phage	100.0	4.1e-57
WP_000050973.1|1711159_1711438_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_025174076.1|1711506_1712670_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	99.7	1.6e-217
WP_031767595.1|1712681_1713455_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	97.3	1.2e-133
WP_020444675.1|1713438_1714677_-|portal	phage portal protein	portal	A0A2I6PF26	Staphylococcus_phage	98.1	2.7e-231
WP_000153538.1|1714681_1716373_-|terminase	terminase large subunit	terminase	M9QX14	Staphylococcus_phage	99.5	0.0e+00
WP_031767599.1|1716362_1716668_-|terminase	P27 family phage terminase small subunit	terminase	U5U414	Staphylococcus_phage	99.0	6.4e-49
WP_000166257.1|1716793_1717114_-	HNH endonuclease	NA	A0A2K9VBV6	Staphylococcus_phage	86.8	4.6e-50
WP_000513699.1|1717274_1717712_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_078066162.1|1717724_1719092_-	DEAD/DEAH box helicase	NA	A0A2I6PDQ0	Staphylococcus_phage	99.8	1.3e-263
WP_000665204.1|1719072_1719363_-	VRR-NUC domain-containing protein	NA	A0A2I6PDQ7	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|1719496_1719601_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_094611253.1|1719703_1720759_-	hypothetical protein	NA	A0A2I6PDP5	Staphylococcus_phage	99.4	4.0e-207
WP_000265258.1|1722202_1722403_-	DUF1514 domain-containing protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_031767608.1|1722470_1722623_-	transcriptional regulator	NA	Q4ZCN4	Staphylococcus_virus	98.0	3.4e-19
WP_001072794.1|1722615_1722819_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_000132920.1|1722815_1723010_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_000195785.1|1723006_1723213_-	DUF1381 domain-containing protein	NA	A0A0F6N4I4	Staphylococcus_phage	100.0	1.1e-20
WP_000185651.1|1723249_1723780_-	dUTP pyrophosphatase	NA	A0A0F6N3L0	Staphylococcus_phage	100.0	1.7e-94
WP_000028421.1|1723772_1723955_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
WP_031766094.1|1723944_1724196_-	DUF1024 family protein	NA	M9NRI5	Staphylococcus_phage	98.8	4.1e-38
WP_031895322.1|1724188_1724497_-	hypothetical protein	NA	C8CH03	Staphylococcus_phage	98.0	8.1e-52
WP_000979209.1|1724493_1724841_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_111023884.1|1724905_1725154_-	hypothetical protein	NA	A0A2I6PDM0	Staphylococcus_phage	97.6	1.4e-41
WP_000111487.1|1725153_1725408_-	DUF3310 domain-containing protein	NA	A0A2I6PF10	Staphylococcus_phage	100.0	3.7e-42
WP_001164629.1|1725806_1725992_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001796208.1|1726004_1727957_-	DNA polymerase	NA	A0A2I6PF18	Staphylococcus_phage	100.0	0.0e+00
WP_000645042.1|1728025_1728583_-	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_000762534.1|1728608_1729775_-	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	99.7	7.0e-221
WP_000985976.1|1729771_1730134_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
WP_000174994.1|1730148_1730472_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285963.1|1730550_1730712_-	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_001124190.1|1730724_1730988_-	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001036302.1|1731012_1731228_-	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001128433.1|1731282_1731648_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1731616_1731862_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_000642492.1|1731917_1732127_+	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000939498.1|1732116_1732260_-	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_023487065.1|1732274_1732718_-	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
WP_000272859.1|1732730_1732979_-	helix-turn-helix transcriptional regulator	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
WP_001260487.1|1733142_1733466_+	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_031807889.1|1733478_1733940_+	toxin	NA	A0A0H3U308	Staphylococcus_phage	99.3	2.1e-83
WP_000825948.1|1733957_1734542_+	hypothetical protein	NA	A0A2I6PD77	Staphylococcus_phage	100.0	1.4e-68
WP_001013104.1|1734771_1734918_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000191459.1|1734914_1735529_-	hypothetical protein	NA	A7TW88	Staphylococcus_phage	100.0	7.9e-107
WP_031795352.1|1735654_1736860_+|integrase	site-specific integrase	integrase	A0A1X9H094	Staphylococcus_phage	99.0	1.6e-220
1736954:1736971	attR	ATCCCATCCTTGTATGAT	NA	NA	NA	NA
>prophage 132
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1751039	1751717	2806864		Planktothrix_phage(100.0%)	1	NA	NA
WP_000911017.1|1751039_1751717_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.9	1.6e-31
>prophage 133
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1767388	1771828	2806864		Mycobacterium_phage(100.0%)	1	NA	NA
WP_000549287.1|1767388_1771828_-	type VII secretion protein EssC	NA	V5UPA0	Mycobacterium_phage	25.6	6.3e-28
>prophage 134
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1782433	1784095	2806864		Amsacta_moorei_entomopoxvirus(50.0%)	2	NA	NA
WP_000570070.1|1782433_1783093_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	37.2	7.6e-23
WP_000736784.1|1783144_1784095_-	glycine-glycine endopeptidase LytM	NA	V5R8R0	Arthrobacter_phage	42.7	1.5e-16
>prophage 135
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1792893	1794330	2806864		Pandoravirus(100.0%)	1	NA	NA
WP_000164003.1|1792893_1794330_-	6-phospho-beta-glucosidase	NA	A0A0B5JD41	Pandoravirus	25.7	1.1e-29
>prophage 136
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1798090	1802629	2806864		Enterobacteria_phage(50.0%)	3	NA	NA
WP_000925394.1|1798090_1799830_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	31.5	1.5e-62
WP_000608818.1|1800089_1800764_-	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA	NA
WP_000975351.1|1800907_1802629_-	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	37.4	2.1e-11
>prophage 137
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1811956	1813000	2806864		Synechococcus_phage(100.0%)	1	NA	NA
WP_000645608.1|1811956_1813000_-	galactitol-1-phosphate 5-dehydrogenase	NA	E3SJ82	Synechococcus_phage	24.9	3.5e-14
>prophage 138
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1820214	1821744	2806864		Vibrio_phage(100.0%)	1	NA	NA
WP_000838205.1|1820214_1821744_+	PTS transporter subunit EIIC	NA	A0A2I7SAJ6	Vibrio_phage	50.7	4.5e-10
>prophage 139
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1830619	1832125	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001008400.1|1830619_1832125_+	acyl--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	25.9	6.0e-39
>prophage 140
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1836395	1837070	2806864	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001105940.1|1836395_1837070_-|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	87.9	4.8e-113
>prophage 141
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1843872	1849231	2806864		Tetraselmis_virus(50.0%)	3	NA	NA
WP_000894660.1|1843872_1846122_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	45.1	1.7e-186
WP_000837116.1|1846709_1847678_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_000127990.1|1847674_1849231_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	27.2	5.8e-13
>prophage 142
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1859441	1861501	2806864		Planktothrix_phage(50.0%)	2	NA	NA
WP_160177591.1|1859441_1860539_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.6	1.4e-24
WP_000166920.1|1860922_1861501_-	M23 family metallopeptidase	NA	A0A2K9VGT1	Pontimonas_phage	39.1	9.7e-14
>prophage 143
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1870050	1873193	2806864		Planktothrix_phage(33.33%)	3	NA	NA
WP_000067352.1|1870050_1871643_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.6	4.1e-22
WP_000794565.1|1872152_1872350_-	helix-turn-helix transcriptional regulator	NA	A0A1V0E021	Clostridioides_phage	43.3	2.1e-05
WP_001558793.1|1872515_1873193_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.4	1.6e-20
>prophage 144
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1877109	1877790	2806864		Planktothrix_phage(100.0%)	1	NA	NA
WP_000571407.1|1877109_1877790_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.0	2.9e-33
>prophage 145
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1894596	1895781	2806864		Klosneuvirus(100.0%)	1	NA	NA
WP_001084442.1|1894596_1895781_+	ornithine--oxo-acid transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.9	2.0e-34
>prophage 146
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1900617	1910901	2806864		Tupanvirus(50.0%)	3	NA	NA
WP_031764751.1|1900617_1907793_-	non-ribosomal peptide synthetase	NA	A0A2K9KZV5	Tupanvirus	29.7	3.4e-68
WP_000826862.1|1908239_1909490_-	MFS transporter	NA	NA	NA	NA	NA
WP_000706135.1|1909875_1910901_-	NAD-dependent formate dehydrogenase	NA	A0A1V0SBV6	Catovirus	33.5	8.5e-29
>prophage 147
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1914437	1917784	2806864		Bacillus_virus(50.0%)	4	NA	NA
WP_000590854.1|1914437_1915178_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	40.1	2.5e-38
WP_000171919.1|1915519_1916032_-	DUF4242 domain-containing protein	NA	NA	NA	NA	NA
WP_000356963.1|1916210_1916414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001013485.1|1916824_1917784_-	cation transporter	NA	A0A1V0SED0	Indivirus	34.2	1.2e-11
>prophage 148
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1921125	1923610	2806864		Catovirus(50.0%)	2	NA	NA
WP_000723436.1|1921125_1922271_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	25.9	4.6e-23
WP_000779504.1|1922347_1923610_-	nucleotide sugar dehydrogenase	NA	A0A127AXI2	Bacillus_phage	25.5	4.3e-22
>prophage 149
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1930445	1937010	2806864		Catovirus(50.0%)	6	NA	NA
WP_000413171.1|1930445_1931570_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SJE0	Klosneuvirus	59.6	6.7e-128
WP_001028283.1|1931573_1932683_-	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA	NA
WP_000459062.1|1932695_1933724_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.3	1.1e-41
WP_000940790.1|1933713_1935537_-	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	29.1	5.2e-29
WP_000565304.1|1935556_1936321_-	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_000037332.1|1936323_1937010_-	tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	36.1	3.7e-28
>prophage 150
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1941030	1942206	2806864		Clostridium_phage(100.0%)	1	NA	NA
WP_000469833.1|1941030_1942206_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0A7RTT7	Clostridium_phage	27.6	2.0e-29
>prophage 151
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1947645	1948419	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000078092.1|1947645_1948419_+	phosphonate ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.1	3.8e-13
>prophage 152
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1956450	1957050	2806864		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000874681.1|1956450_1957050_-	Superoxide dismutase [Mn/Fe] 2	NA	Q56AR7	Bacillus_thuringiensis_phage	50.2	7.6e-54
>prophage 153
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1961987	1967084	2806864		Catovirus(50.0%)	6	NA	NA
WP_001793242.1|1961987_1962968_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SAI6	Catovirus	37.0	1.0e-47
WP_001789407.1|1963037_1963160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000183771.1|1963303_1964080_-	(S)-acetoin forming diacetyl reductase	NA	NA	NA	NA	NA
WP_000414629.1|1964291_1964918_-	MFS transporter	NA	NA	NA	NA	NA
WP_001015549.1|1965113_1965878_-	bifunctional transcriptional regulator/O-phospho-L-serine synthase SbnI	NA	NA	NA	NA	NA
WP_001223713.1|1965881_1967084_-	staphyloferrin B biosynthesis decarboxylase SbnH	NA	A0A2K9L4I2	Tupanvirus	21.1	3.9e-09
>prophage 154
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	1975350	1979560	2806864		Lactococcus_phage(50.0%)	4	NA	NA
WP_000570808.1|1975350_1976331_-	2,3-diaminopropionate biosynthesis protein SbnA	NA	A0A1W6JHY1	Lactococcus_phage	35.6	2.1e-40
WP_001045111.1|1976561_1977554_+	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA	NA
WP_000924990.1|1977569_1978565_+	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA	NA
WP_000136633.1|1978561_1979560_+	staphyloferrin B ABC transporter permease subunit SirC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	27.8	5.2e-15
>prophage 155
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2012685	2013750	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000816133.1|2012685_2013750_-	persulfide response sulfurtransferase CstA	NA	A0A2H4PQR9	Staphylococcus_phage	41.8	7.7e-09
>prophage 156
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2021524	2031534	2806864		Bacillus_phage(40.0%)	7	NA	NA
WP_000088649.1|2021524_2022325_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	1.0e-37
WP_001104165.1|2022713_2023502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001060140.1|2023502_2024837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000871607.1|2024829_2026656_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_000101976.1|2026668_2027370_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000095328.1|2028572_2029856_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	1.8e-68
WP_000375647.1|2030133_2031534_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
>prophage 157
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2038224	2047270	2806864	tRNA	Bacillus_virus(50.0%)	5	NA	NA
WP_000884332.1|2038224_2039511_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	50.9	4.5e-88
WP_000177465.1|2039889_2041404_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	38.4	1.2e-90
WP_000449218.1|2041729_2042542_+	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_000819096.1|2042629_2045299_-	DNA gyrase subunit A	NA	G3M9Z5	Bacillus_virus	35.9	2.7e-119
WP_000255578.1|2045335_2047270_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	44.9	5.7e-143
>prophage 158
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2057370	2063927	2806864		Faecalibacterium_phage(25.0%)	8	NA	NA
WP_000742837.1|2057370_2058210_+	nucleoid occlusion protein	NA	A0A2K9V477	Faecalibacterium_phage	23.8	2.2e-06
WP_000491382.1|2058660_2059014_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_000779134.1|2059081_2059477_+	DUF3147 family protein	NA	NA	NA	NA	NA
WP_001054128.1|2059736_2060306_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	33.3	6.2e-05
WP_001059079.1|2060423_2060624_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	69.8	3.4e-19
WP_000672033.1|2061015_2061207_-	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA	NA
WP_000143647.1|2061298_2063179_-	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA	NA
WP_000154162.1|2063168_2063927_-	peptide resistance ABC transporter ATP-binding subunit VraD	NA	G9BWD6	Planktothrix_phage	39.5	9.0e-36
>prophage 159
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2078182	2079895	2806864		Planktothrix_phage(100.0%)	1	NA	NA
WP_000138654.1|2078182_2079895_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	1.4e-20
>prophage 160
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2085523	2086537	2806864		Faustovirus(100.0%)	1	NA	NA
WP_000639184.1|2085523_2086537_+	histidinol-phosphate aminotransferase family protein	NA	A0A1X7QHI1	Faustovirus	25.9	9.6e-09
>prophage 161
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2098876	2099569	2806864		Streptococcus_phage(100.0%)	1	NA	NA
WP_160177601.1|2098876_2099569_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	38.0	2.2e-28
>prophage 162
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2125667	2127527	2806864		Enterococcus_phage(100.0%)	1	NA	NA
WP_001125628.1|2125667_2127527_-	amidase domain-containing protein	NA	A0A249Y0X5	Enterococcus_phage	37.3	9.7e-15
>prophage 163
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2153228	2154979	2806864		Ectocarpus_siliculosus_virus(50.0%)	2	NA	NA
WP_000143425.1|2153228_2154116_+	sensor histidine kinase	NA	Q8QNA2	Ectocarpus_siliculosus_virus	22.5	2.5e-05
WP_000923760.1|2154223_2154979_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	3.0e-31
>prophage 164
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2158399	2158897	2806864		Canarypox_virus(100.0%)	1	NA	NA
WP_001065268.1|2158399_2158897_+	glutathione peroxidase	NA	Q6VZR0	Canarypox_virus	33.1	1.8e-21
>prophage 165
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2163891	2166275	2806864		Enterococcus_phage(100.0%)	2	NA	NA
WP_001071729.1|2163891_2165742_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	64.3	9.3e-236
WP_000173331.1|2165738_2166275_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	48.0	3.9e-41
>prophage 166
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2171100	2181214	2806864	holin	Klosneuvirus(50.0%)	9	NA	NA
WP_000066521.1|2171100_2172810_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	32.3	3.8e-58
WP_000011688.1|2173087_2173300_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001628203.1|2173579_2174023_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_001581849.1|2174216_2175815_+	AMP-binding protein	NA	A0A2H4PQU7	Staphylococcus_phage	36.8	4.1e-78
WP_001791980.1|2175874_2176204_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001130051.1|2176499_2177996_+	malate dehydrogenase (quinone)	NA	NA	NA	NA	NA
WP_001031409.1|2178189_2179080_-	fructose bisphosphate aldolase	NA	A0A0K0KVJ8	Prochlorococcus_phage	29.2	1.2e-07
WP_001237629.1|2179202_2179619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031763561.1|2179876_2181214_+	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	28.4	3.0e-18
>prophage 167
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2211547	2215336	2806864		Staphylococcus_phage(50.0%)	3	NA	NA
WP_000751263.1|2211547_2212249_+	lytic transglycosylase IsaA	NA	Q4Z8Z7	Staphylococcus_phage	46.4	5.2e-38
WP_000996739.1|2212524_2213013_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000379821.1|2213524_2215336_+	O-acetyltransferase OatA	NA	A0A1R3Y5Q6	Salmonella_virus	31.5	1.3e-35
>prophage 168
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2223770	2229532	2806864	transposase	Acanthocystis_turfacea_Chlorella_virus(50.0%)	4	NA	NA
WP_000161369.1|2223770_2224769_+	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	30.2	1.0e-34
WP_001557163.1|2224983_2226303_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
WP_000076661.1|2226379_2226586_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_000024139.1|2227123_2229532_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	40.8	3.2e-127
>prophage 169
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2238773	2241809	2806864	protease	Enterobacteria_phage(50.0%)	2	NA	NA
WP_001058993.1|2238773_2240879_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	38.5	3.1e-118
WP_000455988.1|2241287_2241809_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	41.1	2.0e-26
>prophage 170
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2248235	2254619	2806864		Yellowstone_lake_phycodnavirus(33.33%)	5	NA	NA
WP_001062663.1|2248235_2249975_+	pyruvate oxidase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.1	6.0e-35
WP_000473679.1|2250275_2252342_+	PTS glucoside EIICBA component	NA	A0A2I7SAJ6	Vibrio_phage	43.3	8.3e-07
WP_000206031.1|2252721_2253132_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_000240663.1|2253173_2253530_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001228167.1|2253650_2254619_+	alpha/beta hydrolase	NA	A0A167RJ59	Powai_lake_megavirus	26.5	4.0e-12
>prophage 171
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2263908	2264901	2806864		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_000161545.1|2263908_2264901_-	D-lactate dehydrogenase	NA	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	32.7	3.7e-37
>prophage 172
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2274179	2274875	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000538625.1|2274179_2274875_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.6	3.0e-38
>prophage 173
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2293751	2294618	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000721336.1|2293751_2294618_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	52.6	1.3e-78
>prophage 174
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2303570	2308766	2806864		Streptococcus_phage(50.0%)	3	NA	NA
WP_001835549.1|2303570_2305379_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	37.3	3.9e-93
WP_000755946.1|2305510_2305903_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_000088733.1|2305904_2308766_+	DUF3427 domain-containing protein	NA	Q5YA94	Bacillus_phage	27.9	3.1e-28
>prophage 175
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2316608	2317304	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000217456.1|2316608_2317304_+	oxidoreductase	NA	W8CYX9	Bacillus_phage	35.6	4.3e-08
>prophage 176
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2321858	2322677	2806864		Acanthamoeba_polyphaga_moumouvirus(100.0%)	1	NA	NA
WP_000824948.1|2321858_2322677_+	SDR family oxidoreductase	NA	L7RG25	Acanthamoeba_polyphaga_moumouvirus	27.2	1.3e-08
>prophage 177
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2330729	2332287	2806864		Planktothrix_phage(50.0%)	2	NA	NA
WP_000173871.1|2330729_2331545_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.8	8.8e-13
WP_000598772.1|2331537_2332287_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.7	9.0e-20
>prophage 178
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2339558	2343987	2806864		Organic_Lake_phycodnavirus(50.0%)	4	NA	NA
WP_000923526.1|2339558_2340221_+	ATP-binding cassette domain-containing protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	30.8	5.5e-21
WP_000072149.1|2340213_2340990_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_000026189.1|2341385_2342573_+	DHA family class C beta-lactamase	NA	NA	NA	NA	NA
WP_000700925.1|2342634_2343987_-	carboxylesterase/lipase family protein	NA	A0A0B5J865	Pandoravirus	34.2	2.5e-12
>prophage 179
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2347381	2349240	2806864		Mycoplasma_phage(50.0%)	2	NA	NA
WP_000948974.1|2347381_2348608_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	50.5	6.6e-20
WP_000569120.1|2348604_2349240_+	ABC transporter permease	NA	G3M9Y4	Bacillus_virus	26.2	9.0e-05
>prophage 180
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2366967	2373229	2806864		Bacillus_phage(66.67%)	5	NA	NA
WP_001176863.1|2366967_2368110_-	glycerate kinase	NA	W6LM47	Streptococcus_phage	44.3	5.3e-56
WP_000779360.1|2368377_2368764_+	GtrA family protein	NA	NA	NA	NA	NA
WP_000482652.1|2368897_2369005_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_001064825.1|2369707_2371471_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.7	2.5e-36
WP_000486487.1|2371495_2373229_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.7	9.0e-31
>prophage 181
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2376690	2382461	2806864		Staphylococcus_phage(75.0%)	6	NA	NA
WP_000971550.1|2376690_2377806_+	pyridoxal phosphate-dependent aminotransferase family protein	NA	V5LQ39	Emiliania_huxleyi_virus	24.7	1.6e-20
WP_000286875.1|2377816_2378509_+	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA	NA
WP_000200956.1|2378519_2378987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000783428.1|2379038_2380016_-	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	NA	A0A2H4PQH7	Staphylococcus_phage	76.2	7.1e-142
WP_000916704.1|2380017_2380965_-	bi-component gamma-hemolysin HlgCB subunit C	NA	A0A2I6PER8	Staphylococcus_phage	77.5	3.2e-139
WP_000594519.1|2381531_2382461_-	bi-component gamma-hemolysin HlgAB subunit A	NA	A0A2H4PQI5	Staphylococcus_phage	71.1	3.2e-120
>prophage 182
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2390282	2391014	2806864		Bacillus_virus(100.0%)	1	NA	NA
WP_000615461.1|2390282_2391014_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.7	4.1e-25
>prophage 183
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2407663	2409223	2806864		Escherichia_phage(100.0%)	1	NA	NA
WP_001581805.1|2407663_2409223_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	46.8	4.4e-21
>prophage 184
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2430551	2431586	2806864		Bacillus_virus(100.0%)	1	NA	NA
WP_000655971.1|2430551_2431586_+	NAD(P)/FAD-dependent oxidoreductase	NA	G3MA85	Bacillus_virus	26.6	5.8e-17
>prophage 185
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2441431	2445328	2806864		Hokovirus(33.33%)	4	NA	NA
WP_000477338.1|2441431_2442805_-	heme sensor histidine kinase HssS	NA	A0A1V0SGX0	Hokovirus	29.8	2.3e-13
WP_000249497.1|2442797_2443472_-	DNA-binding heme response regulator HssR	NA	W8CYM9	Bacillus_phage	45.2	3.6e-52
WP_000761395.1|2443607_2444663_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001229920.1|2444662_2445328_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	1.6e-36
>prophage 186
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2449067	2450276	2806864		Salmonella_phage(100.0%)	1	NA	NA
WP_000999131.1|2449067_2450276_+	multidrug effflux MFS transporter	NA	S4TR35	Salmonella_phage	26.3	3.9e-33
>prophage 187
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2462366	2463266	2806864		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000524830.1|2462366_2463266_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.7	1.2e-15
>prophage 188
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2470638	2471058	2806864		Bacillus_phage(100.0%)	1	NA	NA
WP_000920239.1|2470638_2471058_-	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	NA	Q2LI91	Bacillus_phage	61.9	2.6e-37
>prophage 189
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2476750	2477632	2806864		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_000235289.1|2476750_2477632_+	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	46.3	3.8e-62
>prophage 190
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2485510	2486146	2806864		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000285450.1|2485510_2486146_+	HAD family hydrolase	NA	A7J6N1	Paramecium_bursaria_Chlorella_virus	27.1	1.6e-09
>prophage 191
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2499089	2503069	2806864		Staphylococcus_phage(66.67%)	3	NA	NA
WP_011447058.1|2499089_2499728_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6JQU5	Staphylococcus_phage	48.1	2.6e-36
WP_000417018.1|2501254_2502208_-	2-hydroxyacid dehydrogenase	NA	A0A1V0SBV6	Catovirus	28.9	6.4e-31
WP_000737705.1|2502568_2503069_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	39.3	2.0e-07
>prophage 192
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2506986	2507790	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000717381.1|2506986_2507790_-	CHAP domain-containing protein	NA	A0A2R3ZXQ4	Staphylococcus_phage	41.3	9.3e-07
>prophage 193
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2526769	2527375	2806864		Pithovirus(100.0%)	1	NA	NA
WP_000913024.1|2526769_2527375_+	ATP-binding cassette domain-containing protein	NA	W5SAS9	Pithovirus	30.1	4.3e-12
>prophage 194
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2539345	2542513	2806864		Leptospira_phage(100.0%)	1	NA	NA
WP_000592307.1|2539345_2542513_+	efflux RND transporter permease subunit	NA	S5VTK5	Leptospira_phage	21.8	1.1e-61
>prophage 195
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2566196	2567863	2806864		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_000389658.1|2566196_2567006_+	energy-coupling factor transporter ATPase	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.0	1.7e-19
WP_000155386.1|2567002_2567863_+	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	23.9	9.7e-10
>prophage 196
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2576648	2584304	2806864		Enterobacteria_phage(33.33%)	7	NA	NA
WP_000411031.1|2576648_2577665_+	RNA-directed DNA polymerase	NA	Q7M2A9	Enterobacteria_phage	29.7	1.0e-18
WP_000655241.1|2578238_2578421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000130149.1|2578914_2580579_+	acetolactate synthase AlsS	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	25.9	8.0e-45
WP_000186134.1|2580615_2581320_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_000769705.1|2581703_2582129_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000044362.1|2582423_2583239_+	hydrolase	NA	NA	NA	NA	NA
WP_001044441.1|2583449_2584304_+	M23 family metallopeptidase	NA	E5G070	Clostridium_phage	37.9	4.9e-06
>prophage 197
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2587692	2590002	2806864		Staphylococcus_phage(50.0%)	4	NA	NA
WP_001015500.1|2587692_2588541_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	39.2	2.0e-44
WP_000875476.1|2588773_2588977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791678.1|2589063_2589225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001557494.1|2589261_2590002_-	NAD-dependent protein deacylase	NA	A0A2I2L319	Orpheovirus	29.9	1.5e-14
>prophage 198
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2596322	2597735	2806864		Pandoravirus(100.0%)	1	NA	NA
WP_000169224.1|2596322_2597735_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	28.9	3.0e-48
>prophage 199
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2601698	2603261	2806864		Vibrio_phage(100.0%)	1	NA	NA
WP_000792342.1|2601698_2603261_+	BCCT family transporter	NA	A0A2I7QNT1	Vibrio_phage	24.6	1.2e-18
>prophage 200
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2613463	2614432	2806864		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000989088.1|2613463_2614432_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4IY97	uncultured_Caudovirales_phage	28.8	1.0e-15
>prophage 201
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2630364	2631273	2806864		Klosneuvirus(100.0%)	1	NA	NA
WP_000167867.1|2630364_2631273_+	arginase	NA	A0A1V0SJM8	Klosneuvirus	32.0	3.2e-27
>prophage 202
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2634864	2642310	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_160177621.1|2634864_2642310_+	DUF1542 domain-containing protein	NA	A0A2H4PQU6	Staphylococcus_phage	31.5	3.9e-22
>prophage 203
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2648566	2651386	2806864		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_000334463.1|2648566_2650372_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1H1Z3	Paramecium_bursaria_Chlorella_virus	38.8	5.2e-98
WP_000908182.1|2650603_2651386_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.1	3.3e-09
>prophage 204
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2662566	2666397	2806864		Clostridium_phage(50.0%)	4	NA	NA
WP_000070866.1|2662566_2663010_+	DNA starvation/stationary phase protection protein	NA	A0A0A7RTZ1	Clostridium_phage	53.7	5.6e-38
WP_000160304.1|2663130_2663841_-	purine-nucleoside phosphorylase	NA	NA	NA	NA	NA
WP_001083318.1|2664154_2664817_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_001242311.1|2665095_2666397_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	58.9	3.6e-133
>prophage 205
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2674337	2675948	2806864		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_000159960.1|2674337_2675948_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	49.6	2.7e-146
>prophage 206
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2683751	2691501	2806864		Bacillus_virus(25.0%)	9	NA	NA
WP_000273358.1|2683751_2684351_+	thymidine kinase	NA	G3MBK1	Bacillus_virus	42.9	6.2e-32
WP_000460242.1|2684351_2685428_+	peptide chain release factor 1	NA	NA	NA	NA	NA
WP_000248732.1|2685414_2686251_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_015445903.1|2686283_2687381_+	threonylcarbamoyl-AMP synthase	NA	A0A291ATS8	Pandoravirus	35.3	2.3e-40
WP_000697334.1|2687377_2687797_+	low molecular weight protein arginine phosphatase	NA	NA	NA	NA	NA
WP_000654184.1|2687903_2688428_+	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_000120494.1|2688454_2689693_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	8.2e-103
WP_000048712.1|2689720_2690350_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000723418.1|2690373_2691501_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	29.9	1.0e-27
>prophage 207
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2701905	2702301	2806864		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000932694.1|2701905_2702301_+	single-stranded DNA-binding protein	NA	A0A1J0MFK5	Staphylococcus_phage	38.5	1.3e-14
>prophage 208
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2708572	2709220	2806864		Moumouvirus(100.0%)	1	NA	NA
WP_001187630.1|2708572_2709220_-	HD domain-containing protein	NA	H2ED17	Moumouvirus	27.0	8.0e-09
>prophage 209
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2716420	2717941	2806864		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001178942.1|2716420_2717941_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	33.9	2.0e-58
>prophage 210
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2725131	2727159	2806864		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000546611.1|2725131_2727159_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.5	2.3e-25
>prophage 211
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2732308	2735693	2806864		Clostridium_botulinum_C_phage(50.0%)	5	NA	NA
WP_000621175.1|2732308_2732671_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q332J9	Clostridium_botulinum_C_phage	32.8	4.2e-07
WP_000390829.1|2733020_2734022_+	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA	NA
WP_001052491.1|2734140_2734467_+	anti-sigma factor antagonist	NA	NA	NA	NA	NA
WP_001190829.1|2734468_2734948_+	anti-sigma B factor RsbW	NA	NA	NA	NA	NA
WP_001041111.1|2734922_2735693_+	RNA polymerase sigma factor SigB	NA	A0A0A0RNH9	Bacillus_phage	34.9	2.2e-21
>prophage 212
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2749811	2754535	2806864		Micromonas_sp._RCC1109_virus(50.0%)	4	NA	NA
WP_160177623.1|2749811_2751341_-	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	28.1	7.2e-08
WP_072399972.1|2751370_2752390_-	ketol-acid reductoisomerase	NA	NA	NA	NA	NA
WP_000196911.1|2752511_2752766_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000047811.1|2752765_2754535_-	biosynthetic-type acetolactate synthase large subunit	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	30.6	7.0e-63
>prophage 213
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2758295	2772356	2806864	tRNA	Moraxella_phage(16.67%)	12	NA	NA
WP_000159042.1|2758295_2759321_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	40.6	3.4e-62
WP_000106332.1|2759635_2761246_-	MutS family DNA mismatch repair protein	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	1.9e-19
WP_001792272.1|2761334_2761463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000602057.1|2761607_2763536_-	ABC-F type ribosomal protection protein	NA	A0A2K9L0W2	Tupanvirus	30.2	9.3e-53
WP_001283612.1|2763788_2764424_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_072414299.1|2764778_2765807_+	YeeE/YedE family protein	NA	NA	NA	NA	NA
WP_000581076.1|2765866_2766091_+	sulfurtransferase TusA family protein	NA	NA	NA	NA	NA
WP_001052270.1|2766298_2767549_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	31.2	4.5e-40
WP_000790331.1|2767731_2768682_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_000141432.1|2768830_2770315_+	glycoside hydrolase family 32 protein	NA	S6ATV4	Bacillus_phage	26.5	2.3e-19
WP_001253312.1|2770311_2771271_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_000688492.1|2771639_2772356_-	response regulator transcription factor	NA	A0A2H4J4Z6	uncultured_Caudovirales_phage	32.6	2.3e-25
>prophage 214
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2779537	2781514	2806864		uncultured_virus(100.0%)	2	NA	NA
WP_000917289.1|2779537_2779822_+	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000240642.1|2779897_2781514_+	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
>prophage 215
NZ_CP047777	Staphylococcus aureus strain UP_1632 chromosome, complete genome	2806864	2785463	2806394	2806864	integrase	Staphylococcus_phage(97.22%)	38	2788306:2788320	2798009:2798023
WP_000791411.1|2785463_2786519_+	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000595392.1|2786540_2787557_+	bi-component leukocidin LukGH subunit G	NA	A0A1X9IGW5	Staphylococcus_phage	30.2	6.7e-26
2788306:2788320	attL	CTATCATTATCGAAT	NA	NA	NA	NA
WP_000857180.1|2788675_2789713_-|integrase	site-specific integrase	integrase	Q38086	Staphylococcus_phage	98.6	1.4e-175
WP_000427213.1|2789775_2790018_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001558608.1|2790028_2791012_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000694772.1|2791111_2791294_-	hypothetical protein	NA	A0A2I6PDF8	Staphylococcus_phage	100.0	6.9e-27
WP_000591749.1|2791497_2791839_-	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000759682.1|2791844_2792777_-	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_001031454.1|2792792_2793506_-	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000854072.1|2793639_2793903_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001025404.1|2793918_2794134_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000128909.1|2794122_2794452_-	hypothetical protein	NA	M9NS98	Staphylococcus_phage	98.2	5.1e-52
WP_001148605.1|2794502_2795255_+	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_001148856.1|2795270_2795468_+	hypothetical protein	NA	O80075	Staphylococcus_phage	100.0	2.5e-30
WP_000762521.1|2795454_2795835_-	DUF2513 domain-containing protein	NA	Q9T1Z5	Staphylococcus_phage	100.0	1.2e-68
WP_001120201.1|2795889_2796213_+	DUF771 domain-containing protein	NA	A0A075LYF5	Staphylococcus_phage	100.0	3.0e-57
WP_000048129.1|2796209_2796371_+	DUF1270 family protein	NA	A0A1P8L6G0	Staphylococcus_phage	100.0	1.9e-20
WP_000165371.1|2796465_2796768_+	DUF2482 family protein	NA	A0A1P8L6F8	Staphylococcus_phage	100.0	7.0e-48
WP_000291510.1|2796772_2797033_+	DUF1108 family protein	NA	A0A1P8L6F5	Staphylococcus_phage	100.0	5.2e-44
WP_001205732.1|2797041_2797305_+	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000700554.1|2797313_2799257_+	AAA family ATPase	NA	A0A1P8L6F1	Staphylococcus_phage	100.0	0.0e+00
2798009:2798023	attR	ATTCGATAATGATAG	NA	NA	NA	NA
WP_000180600.1|2799258_2800179_+	recombinase RecT	NA	A0A1P8L6F6	Staphylococcus_phage	100.0	5.1e-166
WP_064135358.1|2800259_2800877_+	MBL fold metallo-hydrolase	NA	A0A1P8L6F7	Staphylococcus_phage	100.0	1.2e-86
WP_000934759.1|2800877_2801348_+	single-stranded DNA-binding protein	NA	A0A1P8L6D9	Staphylococcus_phage	100.0	5.7e-81
WP_160177627.1|2801377_2802271_+	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	99.7	1.2e-140
WP_000338528.1|2802277_2802496_+	hypothetical protein	NA	A0A1P8L6E4	Staphylococcus_phage	100.0	1.4e-37
WP_000401969.1|2802504_2802909_+	RusA family crossover junction endodeoxyribonuclease	NA	A0A075M042	Staphylococcus_phage	100.0	8.4e-73
WP_000101279.1|2802921_2803293_+	hypothetical protein	NA	A0A2I6PDG3	Staphylococcus_phage	91.1	1.4e-50
WP_000111491.1|2803292_2803550_+	DUF3310 domain-containing protein	NA	A0A1X9H067	Staphylococcus_phage	98.8	6.3e-42
WP_000178987.1|2803546_2803795_+	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	96.3	7.5e-40
WP_001065108.1|2803809_2804055_+	DUF1024 family protein	NA	Q8SDV5	Staphylococcus_phage	95.1	1.7e-36
WP_000185693.1|2804051_2804588_+	hypothetical protein	NA	Q9MBR0	Staphylococcus_prophage	100.0	1.6e-95
WP_001282077.1|2804624_2804870_+	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	98.8	2.5e-35
WP_000195784.1|2804866_2805073_+	DUF1381 domain-containing protein	NA	A0A2I6PEA2	Staphylococcus_phage	94.1	1.1e-17
WP_000595265.1|2805069_2805219_+	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_001557462.1|2805218_2805419_+	DUF1514 domain-containing protein	NA	D2JLD9	Staphylococcus_phage	98.5	5.3e-28
WP_000590122.1|2805446_2805863_+	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000988332.1|2806094_2806394_+	HNH endonuclease	NA	A0A2I6PDH9	Staphylococcus_phage	100.0	3.5e-52
