assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009911815.1_ASM991181v1	NZ_CP047811	Staphylococcus aureus strain UP_1522 chromosome, complete genome	1	2255161-2255294	1	PILER-CR	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	TATTGAAGAAGATACAA	17	1	1	2255241-2255277	NZ_CP047811.1_2251672-2251708	NA	2	2	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|103aa|down_1|NZ_CP047811.1_2256927_2257236_-,NA|89aa|down_2|NZ_CP047811.1_2257375_2257642_-,NA|41aa|down_9|NZ_CP047811.1_2265980_2266103_-	NA|204aa|up_9|NZ_CP047811.1_2237060_2237672_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|426aa|up_8|NZ_CP047811.1_2238218_2239496_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|608aa|up_7|NZ_CP047811.1_2240407_2242231_+	COG1289, COG1289, Predicted membrane protein [Function unknown]	NA|139aa|up_6|NZ_CP047811.1_2242369_2242786_+	COG4876, COG4876, Uncharacterized protein conserved in bacteria [Function unknown]	NA|231aa|up_5|NZ_CP047811.1_2243015_2243708_+	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only]	NA|255aa|up_4|NZ_CP047811.1_2243872_2244637_+	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|227aa|up_3|NZ_CP047811.1_2244790_2245471_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|518aa|up_2|NZ_CP047811.1_2245494_2247048_+	TIGR01314, gntK_FGGY, gluconate kinase, FGGY type	NA|453aa|up_1|NZ_CP047811.1_2247164_2248523_+	TIGR00791, Gluconate_permease, gluconate transporter	NA|1054aa|up_0|NZ_CP047811.1_2248991_2252153_+	pfam10425, SdrG_C_C, C-terminus of bacterial fibrinogen-binding adhesin	NA|289aa|down_0|NZ_CP047811.1_2255934_2256801_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|103aa|down_1|NZ_CP047811.1_2256927_2257236_-	NA	NA|89aa|down_2|NZ_CP047811.1_2257375_2257642_-	NA	NA|603aa|down_3|NZ_CP047811.1_2257925_2259734_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|131aa|down_4|NZ_CP047811.1_2259865_2260258_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|954aa|down_5|NZ_CP047811.1_2260259_2263121_+	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|253aa|down_6|NZ_CP047811.1_2263426_2264185_+	pfam04507, DUF576, Csa1 family	NA|258aa|down_7|NZ_CP047811.1_2264296_2265070_+	pfam04507, DUF576, Csa1 family	NA|262aa|down_8|NZ_CP047811.1_2265181_2265967_+	pfam04507, DUF576, Csa1 family	NA|41aa|down_9|NZ_CP047811.1_2265980_2266103_-	NA
GCF_009911815.1_ASM991181v1	NZ_CP047811	Staphylococcus aureus strain UP_1522 chromosome, complete genome	2	2335514-2335607	1	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CCTTTCTAACAAATAAATTTGAAGAA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|35aa|up_0|NZ_CP047811.1_2335214_2335319_+,NA|35aa|down_2|NZ_CP047811.1_2337780_2337885_-	NA|453aa|up_9|NZ_CP047811.1_2325147_2326506_+	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase	NA|336aa|up_8|NZ_CP047811.1_2326507_2327515_+	PRK06256, PRK06256, biotin synthase; Validated	NA|372aa|up_7|NZ_CP047811.1_2327492_2328608_+	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]	NA|231aa|up_6|NZ_CP047811.1_2328618_2329311_+	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism]	NA|156aa|up_5|NZ_CP047811.1_2329321_2329789_+	pfam06177, QueT, QueT transporter	NA|326aa|up_4|NZ_CP047811.1_2329847_2330825_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|316aa|up_3|NZ_CP047811.1_2330826_2331774_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|310aa|up_2|NZ_CP047811.1_2332341_2333271_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|438aa|up_1|NZ_CP047811.1_2333806_2335120_-	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI	NA|35aa|up_0|NZ_CP047811.1_2335214_2335319_+	NA	NA|289aa|down_0|NZ_CP047811.1_2335747_2336614_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|229aa|down_1|NZ_CP047811.1_2336940_2337627_+	PRK14119, gpmA, phosphoglyceromutase; Provisional	NA|35aa|down_2|NZ_CP047811.1_2337780_2337885_-	NA	NA|480aa|down_3|NZ_CP047811.1_2338058_2339498_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|260aa|down_4|NZ_CP047811.1_2339618_2340398_+	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold	NA|240aa|down_5|NZ_CP047811.1_2340378_2341098_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|244aa|down_6|NZ_CP047811.1_2341094_2341826_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|417aa|down_7|NZ_CP047811.1_2341922_2343173_-	pfam02388, FemAB, FemAB family	NA|121aa|down_8|NZ_CP047811.1_2343427_2343790_+	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467)	NA|200aa|down_9|NZ_CP047811.1_2343808_2344408_+	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
GCF_009911815.1_ASM991181v1	NZ_CP047811	Staphylococcus aureus strain UP_1522 chromosome, complete genome	3	2488136-2488220	2	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	CAAGTTGGGGAACGGGGCCCCAACA	25	1	8	2488161-2488195|2488161-2488195|2488161-2488195|2488161-2488195|2488161-2488195|2488161-2488195|2488161-2488195|2488161-2488195	NZ_CP047811.1_2488275-2488309|NZ_CP047811.1_969164-969198|NZ_CP047811.1_1174530-1174564|NZ_CP047811.1_2499022-2499056|NZ_CP047811.1_868831-868797|NZ_CP047811.1_2710559-2710525|NZ_CP047811.1_78662-78696|NZ_CP047811.1_1082295-1082261	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|57aa|down_0|NZ_CP047811.1_2488335_2488506_-,NA|84aa|down_5|NZ_CP047811.1_2491646_2491898_-,NA|106aa|down_8|NZ_CP047811.1_2497019_2497337_-,NA|55aa|down_9|NZ_CP047811.1_2497581_2497746_-	NA|202aa|up_9|NZ_CP047811.1_2480975_2481581_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP047811.1_2481748_2482753_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP047811.1_2482782_2483289_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP047811.1_2483290_2483785_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP047811.1_2483847_2485107_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP047811.1_2485103_2485589_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP047811.1_2485602_2486049_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP047811.1_2486054_2486288_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP047811.1_2486294_2486894_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP047811.1_2486913_2487936_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP047811.1_2488335_2488506_-	NA	NA|117aa|down_1|NZ_CP047811.1_2488631_2488982_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP047811.1_2489083_2490295_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP047811.1_2490287_2490728_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP047811.1_2490890_2491655_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP047811.1_2491646_2491898_-	NA	NA|422aa|down_6|NZ_CP047811.1_2492286_2493552_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP047811.1_2493668_2496836_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP047811.1_2497019_2497337_-	NA	NA|55aa|down_9|NZ_CP047811.1_2497581_2497746_-	NA
GCF_009911815.1_ASM991181v1	NZ_CP047811	Staphylococcus aureus strain UP_1522 chromosome, complete genome	4	2526671-2526803	3	CRISPRCasFinder	no		DEDDh,csa3,cas3,DinG,WYL	Orphan	GAAACCAATGATATCAAGGGTTTTGTGAGCTTTCGAGTAAAGAG	44	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA,NA|61aa|down_0|NZ_CP047811.1_2527713_2527896_+,NA|67aa|down_1|NZ_CP047811.1_2527877_2528078_-,NA|93aa|down_7|NZ_CP047811.1_2534434_2534713_-,NA|56aa|down_8|NZ_CP047811.1_2539059_2539227_-	NA|130aa|up_9|NZ_CP047811.1_2518146_2518536_+	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|315aa|up_8|NZ_CP047811.1_2518610_2519555_+	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|123aa|up_7|NZ_CP047811.1_2519571_2519940_+	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|270aa|up_6|NZ_CP047811.1_2520477_2521287_+	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|287aa|up_5|NZ_CP047811.1_2521283_2522144_+	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|269aa|up_4|NZ_CP047811.1_2522133_2522940_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|268aa|up_3|NZ_CP047811.1_2522944_2523748_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|146aa|up_2|NZ_CP047811.1_2523987_2524425_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|133aa|up_1|NZ_CP047811.1_2524438_2524837_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|479aa|up_0|NZ_CP047811.1_2525185_2526622_+	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|61aa|down_0|NZ_CP047811.1_2527713_2527896_+	NA	NA|67aa|down_1|NZ_CP047811.1_2527877_2528078_-	NA	NA|555aa|down_2|NZ_CP047811.1_2528366_2530031_+	PRK08617, PRK08617, acetolactate synthase AlsS	NA|235aa|down_3|NZ_CP047811.1_2530067_2530772_+	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|142aa|down_4|NZ_CP047811.1_2531147_2531573_-	pfam03642, MAP, MAP domain	NA|272aa|down_5|NZ_CP047811.1_2531867_2532683_+	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|506aa|down_6|NZ_CP047811.1_2532907_2534425_-	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|93aa|down_7|NZ_CP047811.1_2534434_2534713_-	NA	NA|56aa|down_8|NZ_CP047811.1_2539059_2539227_-	NA	NA|139aa|down_9|NZ_CP047811.1_2539470_2539887_+	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB
GCF_009911815.1_ASM991181v1	NZ_CP047811	Staphylococcus aureus strain UP_1522 chromosome, complete genome	5	2606254-2606342	4	CRISPRCasFinder	no	csa3	DEDDh,csa3,cas3,DinG,WYL	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTTTAAG	32	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas3,DinG,WYL	NA|31aa|up_0|NZ_CP047811.1_2606041_2606134_-,NA|364aa|down_0|NZ_CP047811.1_2606355_2607447_-,NA|77aa|down_5|NZ_CP047811.1_2611233_2611464_+	NA|311aa|up_9|NZ_CP047811.1_2585919_2586852_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|452aa|up_8|NZ_CP047811.1_2586878_2588234_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|369aa|up_7|NZ_CP047811.1_2596199_2597306_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_6|NZ_CP047811.1_2597305_2597740_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_5|NZ_CP047811.1_2597751_2599884_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|517aa|up_4|NZ_CP047811.1_2599918_2601469_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_3|NZ_CP047811.1_2602149_2603955_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_2|NZ_CP047811.1_2604187_2604970_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_1|NZ_CP047811.1_2605037_2605895_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_0|NZ_CP047811.1_2606041_2606134_-	NA	NA|364aa|down_0|NZ_CP047811.1_2606355_2607447_-	NA	NA|326aa|down_1|NZ_CP047811.1_2607712_2608690_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP047811.1_2608691_2609012_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP047811.1_2609163_2609829_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP047811.1_2610264_2611203_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP047811.1_2611233_2611464_+	NA	NA|458aa|down_6|NZ_CP047811.1_2612137_2613511_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP047811.1_2613968_2614382_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP047811.1_2614581_2615025_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP047811.1_2615145_2615856_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
