The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	102798	135392	6095635	transposase,holin	Bacillus_virus(20.0%)	26	NA	NA
WP_160285448.1|102798_103815_-|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_043248118.1|104052_105156_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_160285449.1|105520_106897_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_160285450.1|107228_108155_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_043248121.1|108376_109315_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_043248123.1|109356_110196_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_043248125.1|110202_111381_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	36.1	8.5e-25
WP_160285451.1|111743_112754_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_160285452.1|112914_113763_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_043256773.1|113816_115235_-	aminotransferase	NA	NA	NA	NA	NA
WP_043248129.1|115323_116427_-	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_160285453.1|116621_117257_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_156957968.1|117378_118122_+	response regulator	NA	W8CYM9	Bacillus_phage	32.9	2.2e-26
WP_160285454.1|118124_118892_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_160285455.1|118888_121093_+	response regulator	NA	A0A1V0SGX0	Hokovirus	34.8	6.9e-44
WP_160285456.1|121283_122693_+	amino acid permease	NA	NA	NA	NA	NA
WP_043248140.1|123021_123810_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_043248142.1|123826_124987_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_160285457.1|124999_127090_+	acetate--CoA ligase family protein	NA	NA	NA	NA	NA
WP_160285458.1|127192_128803_+	5-guanidino-2-oxopentanoate decarboxylase	NA	E4WLQ6	Ostreococcus_tauri_virus	22.6	1.2e-13
WP_160285459.1|128860_130051_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_160285460.1|130043_131462_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_043248151.1|131507_132212_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_160288858.1|132604_133522_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160285461.1|133640_133841_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160285462.1|134186_135392_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	51.7	1.6e-106
>prophage 2
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	1309762	1317566	6095635		uncultured_Mediterranean_phage(16.67%)	7	NA	NA
WP_156958117.1|1309762_1310398_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	53.5	7.1e-42
WP_084166779.1|1310462_1311335_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A292GJG6	Xanthomonas_phage	46.9	2.9e-14
WP_043249944.1|1311429_1312434_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	9.2e-36
WP_043249946.1|1312856_1313180_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_043249947.1|1313246_1315787_-	DNA mismatch repair protein MutS	NA	A0A1V0SGG8	Hokovirus	23.5	2.7e-28
WP_043250046.1|1315903_1316416_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	66.1	1.1e-50
WP_043250048.1|1316504_1317566_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	63.9	1.5e-113
>prophage 3
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	1847338	1894598	6095635	integrase,head,terminase	Pseudomonas_phage(39.13%)	72	1848093:1848140	1895261:1895308
WP_003090661.1|1847338_1847641_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	38.9	1.0e-11
WP_043250922.1|1847621_1847978_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
1848093:1848140	attL	GCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAA	NA	NA	NA	NA
WP_160286344.1|1848222_1849404_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A059VF45	Pseudomonas_phage	74.8	7.7e-175
WP_160286345.1|1849741_1850029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286346.1|1850090_1850318_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_160288893.1|1850317_1850551_-	hypothetical protein	NA	A0A127KNQ8	Pseudomonas_phage	62.1	1.9e-24
WP_160286347.1|1850603_1850867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286348.1|1850859_1851231_-	hypothetical protein	NA	A0A1B0YZW8	Pseudomonas_phage	37.9	1.8e-05
WP_160286349.1|1851223_1852447_-	hypothetical protein	NA	A0A0U1VZL6	Pseudomonas_phage	47.3	6.0e-05
WP_160286350.1|1852446_1852662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286351.1|1852665_1852920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286352.1|1853002_1853386_-	DUF1937 family protein	NA	S4TW22	Salmonella_phage	44.3	6.6e-19
WP_160286353.1|1853426_1854578_-	RNA-directed DNA polymerase	NA	A0A0N7AE80	Bacillus_phage	34.6	4.5e-47
WP_160286354.1|1854782_1855139_-	four helix bundle protein	NA	NA	NA	NA	NA
WP_160286355.1|1855191_1855803_-	DUF1566 domain-containing protein	NA	NA	NA	NA	NA
WP_160286356.1|1855890_1856514_-	DUF1566 domain-containing protein	NA	A0A0A0YR68	Pseudomonas_phage	48.9	2.9e-32
WP_160286357.1|1856561_1856798_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286358.1|1856874_1857123_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286359.1|1857124_1857649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286360.1|1857645_1858413_-	YqaJ viral recombinase family protein	NA	F8TUK8	EBPR_podovirus	33.9	7.8e-19
WP_160286361.1|1858409_1859171_-	single-stranded DNA-binding protein	NA	A0A125RNR3	Pseudomonas_phage	47.4	1.1e-36
WP_160286362.1|1859605_1859869_-	DUF551 domain-containing protein	NA	NA	NA	NA	NA
WP_160286363.1|1859865_1860075_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286364.1|1860071_1860398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286365.1|1860531_1861017_-	HNH endonuclease	NA	A0A2H5BPP8	Salmonella_phage	42.5	2.1e-25
WP_160286366.1|1861735_1862068_+	DUF1654 domain-containing protein	NA	H2BD60	Pseudomonas_phage	51.4	9.4e-22
WP_160286367.1|1862114_1862570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160288894.1|1862609_1862834_-	hypothetical protein	NA	A0A127KNL7	Pseudomonas_phage	79.7	2.6e-23
WP_160286368.1|1862922_1863231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286369.1|1863288_1864173_-	LexA family transcriptional regulator	NA	H2BD63	Pseudomonas_phage	62.6	2.0e-82
WP_160286370.1|1864255_1864495_+	helix-turn-helix domain-containing protein	NA	A0A2H4J0V8	uncultured_Caudovirales_phage	63.3	4.5e-18
WP_160286371.1|1864506_1864698_+	hypothetical protein	NA	B5WZX7	Pseudomonas_phage	54.8	2.8e-10
WP_160286372.1|1864716_1864896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286373.1|1864906_1865179_+	hypothetical protein	NA	Q9MC56	Pseudomonas_phage	62.8	8.8e-18
WP_160286374.1|1865175_1865973_+	phage replication protein	NA	A0A127KNX8	Pseudomonas_phage	61.0	2.9e-40
WP_160286375.1|1865965_1867345_+	replicative DNA helicase	NA	H2BD70	Pseudomonas_phage	56.7	1.1e-137
WP_160286376.1|1867460_1867703_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286377.1|1867695_1868112_+	NinB family protein	NA	A0A1B0VMG4	Pseudomonas_phage	68.8	5.8e-53
WP_160286378.1|1868111_1868705_+	recombination protein NinG	NA	A0A125RNK9	Pseudomonas_phage	68.1	3.1e-68
WP_160286379.1|1869371_1869878_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_160286380.1|1869988_1870303_+	peptidase M48, Ste24p	NA	A0A125RNL3	Pseudomonas_phage	55.0	8.6e-17
WP_160286381.1|1870305_1870602_+	hypothetical protein	NA	A0A125RNL4	Pseudomonas_phage	61.1	1.4e-21
WP_160286382.1|1870604_1871072_+	hypothetical protein	NA	C7U0W1	Enterobacteria_phage	67.7	2.2e-45
WP_160286383.1|1871074_1872475_+|terminase	phage terminase large subunit	terminase	A0A0D4DCE6	Acinetobacter_phage	59.7	1.1e-148
WP_160288895.1|1872540_1873974_+	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	46.8	1.1e-114
WP_160286384.1|1874026_1874710_+|head	phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	54.0	1.3e-62
WP_160286385.1|1874718_1874892_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160288896.1|1875016_1876360_+	DUF2213 domain-containing protein	NA	A0A219YBB9	Aeromonas_phage	40.0	4.9e-69
WP_160286386.1|1876364_1876841_+	hypothetical protein	NA	A0A2R3UAX9	Myoviridae_environmental_samples	55.6	5.0e-32
WP_160286387.1|1876846_1877881_+	DUF2184 domain-containing protein	NA	A0A219YBB0	Aeromonas_phage	50.0	3.4e-94
WP_160286388.1|1877884_1878211_+	hypothetical protein	NA	I2GUD8	Acinetobacter_phage	36.4	9.0e-09
WP_160286389.1|1878214_1878649_+	DUF4054 domain-containing protein	NA	Q2NPC6	Xanthomonas_phage	45.5	7.5e-19
WP_160286390.1|1878636_1879113_+	hypothetical protein	NA	A0A077KC03	Edwardsiella_phage	47.2	2.0e-25
WP_160286391.1|1879087_1879465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286392.1|1879443_1879974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286393.1|1879973_1881455_+	DUF3383 domain-containing protein	NA	H9C0W5	Aeromonas_phage	41.6	8.1e-89
WP_160286394.1|1881466_1881898_+	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	41.9	1.3e-23
WP_160286395.1|1881897_1882326_+	hypothetical protein	NA	K4IBX0	Acinetobacter_phage	33.8	2.4e-09
WP_160286396.1|1882505_1884386_+	hypothetical protein	NA	A0A1W6JPF2	Morganella_phage	27.9	1.9e-26
WP_160286397.1|1884385_1885033_+	hypothetical protein	NA	A0A1V0DZ59	Acinetobacter_phage	37.6	1.8e-21
WP_160286398.1|1885041_1886568_+	hypothetical protein	NA	A0A0F7L427	uncultured_marine_virus	32.7	1.7e-12
WP_160286399.1|1886603_1886963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286400.1|1886971_1887853_+	hypothetical protein	NA	A0A077KC17	Edwardsiella_phage	27.3	2.3e-22
WP_160286401.1|1887836_1888496_+	hypothetical protein	NA	H9C0X6	Aeromonas_phage	46.3	8.4e-30
WP_160286402.1|1888444_1889062_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286403.1|1889092_1889446_+	hypothetical protein	NA	H9C0X7	Aeromonas_phage	39.3	1.4e-15
WP_160286404.1|1889445_1890660_+	hypothetical protein	NA	A0A077KGW9	Edwardsiella_phage	48.0	7.1e-99
WP_160286405.1|1890656_1891337_+	DUF2612 domain-containing protein	NA	A0A2R3UAM9	Myoviridae_environmental_samples	46.7	1.5e-50
WP_160286406.1|1891326_1892388_+	hypothetical protein	NA	A0A2R3UAP8	Myoviridae_environmental_samples	56.1	5.0e-24
WP_160286407.1|1892388_1892847_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286408.1|1892850_1893933_-	acyltransferase	NA	NA	NA	NA	NA
WP_160286409.1|1893968_1894598_+	glycoside hydrolase family 19 protein	NA	J7I4M6	Pseudomonas_phage	72.7	9.6e-84
1895261:1895308	attR	GCATGGGGTGCAAGGGGTCGAGTGTTCGAATCACTCCGTCCCGACCAA	NA	NA	NA	NA
>prophage 4
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	2026359	2086751	6095635	protease,integrase,tRNA,portal,head,terminase,capsid,holin	uncultured_Caudovirales_phage(23.08%)	60	2045399:2045416	2068524:2068541
WP_160286493.1|2026359_2026902_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_043251164.1|2027148_2027967_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_160286494.1|2028132_2030502_+	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	37.2	1.1e-180
WP_160286495.1|2030570_2031548_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_043251169.1|2031725_2032214_+	putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
WP_043251173.1|2032322_2033321_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_043251176.1|2033376_2033625_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286496.1|2033627_2034452_+	mechanosensitive ion channel	NA	NA	NA	NA	NA
WP_043251181.1|2034526_2035117_+	RNA polymerase sigma factor SigX	NA	NA	NA	NA	NA
WP_043251184.1|2035234_2036296_+	OmpA family protein	NA	NA	NA	NA	NA
WP_160286497.1|2036359_2037094_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_160286498.1|2037105_2039814_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_160286499.1|2039840_2040167_-	nitrite reductase small subunit NirD	NA	NA	NA	NA	NA
WP_160286500.1|2040177_2042628_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_160286501.1|2042893_2044564_-	bifunctional protein-serine/threonine kinase/phosphatase	NA	A0A1V0SBS0	Catovirus	30.6	6.5e-10
WP_043251197.1|2044678_2045890_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA	NA
2045399:2045416	attL	GCCGAAGGCGACGGCCAG	NA	NA	NA	NA
WP_160286502.1|2046194_2046623_-	thioesterase	NA	NA	NA	NA	NA
WP_160286503.1|2046695_2047388_-	polysaccharide lyase family 7 protein	NA	NA	NA	NA	NA
WP_043251204.1|2047604_2048183_-	ANTAR domain-containing protein	NA	NA	NA	NA	NA
WP_160286504.1|2048197_2049394_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_160286505.1|2049777_2052387_-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA	NA
WP_160286506.1|2052914_2053391_+	DUF1289 domain-containing protein	NA	NA	NA	NA	NA
WP_160286507.1|2053441_2054305_-	universal stress protein	NA	NA	NA	NA	NA
WP_043251216.1|2054486_2055092_+|tRNA	tRNA hydroxylase	tRNA	NA	NA	NA	NA
WP_043251217.1|2055138_2055348_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA	NA
WP_043251219.1|2055422_2056166_-	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA	NA
WP_043251221.1|2056170_2056668_-	peptidylprolyl isomerase	NA	A0A076FI46	Aureococcus_anophage	36.0	3.1e-16
WP_160286508.1|2056791_2058474_+|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	tRNA	A0A222YZ70	Escherichia_phage	61.1	7.5e-200
WP_160286509.1|2058474_2059860_+|tRNA	cysteine--tRNA ligase	tRNA	A0A2L2DK39	Acanthamoeba_polyphaga_mimivirus	35.7	1.8e-45
WP_160286510.1|2060180_2061035_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	33.2	1.0e-27
WP_160286511.1|2061782_2063033_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A0U1UNT3	Pseudomonas_phage	69.0	9.3e-163
WP_160286512.1|2063004_2063238_-	AlpA family phage regulatory protein	NA	B7SYF9	Stenotrophomonas_phage	50.0	2.4e-11
WP_160286513.1|2063234_2063441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160288901.1|2063533_2064277_-	hypothetical protein	NA	A0A2H4IY33	uncultured_phage	40.1	1.0e-39
WP_160286514.1|2064830_2066753_-	DNA cytosine methyltransferase	NA	J7HXB9	Pseudomonas_phage	64.5	1.4e-255
WP_160286515.1|2068097_2068577_-	hypothetical protein	NA	NA	NA	NA	NA
2068524:2068541	attR	GCCGAAGGCGACGGCCAG	NA	NA	NA	NA
WP_160286516.1|2068654_2069467_-	DUF2303 family protein	NA	U5P439	Shigella_phage	44.7	4.5e-49
WP_160286517.1|2069512_2069860_-	hypothetical protein	NA	A8HP44	Thalassomonas_phage	38.7	1.7e-10
WP_160286518.1|2070080_2070317_-	transcriptional regulator PrtN	NA	A0A2H4J8B4	uncultured_Caudovirales_phage	44.2	3.2e-08
WP_160286519.1|2070313_2070685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286520.1|2070681_2070966_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286521.1|2070975_2071545_-	deoxynucleotide monophosphate kinase	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	50.0	1.6e-45
WP_160286522.1|2071541_2071850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286523.1|2071846_2072038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286524.1|2072205_2072550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286525.1|2072787_2073435_-	LexA family transcriptional regulator	NA	F1C599	Cronobacter_phage	35.9	1.3e-19
WP_160286526.1|2073536_2073776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286527.1|2073946_2074447_+	hypothetical protein	NA	A0A2H4JFM0	uncultured_Caudovirales_phage	58.3	6.2e-33
WP_160286528.1|2074439_2074649_+	TraR/DksA family transcriptional regulator	NA	Q9ZXI6	Pseudomonas_virus	57.8	6.1e-11
WP_160286529.1|2074645_2077387_+	DNA primase	NA	A0A2H4JF22	uncultured_Caudovirales_phage	65.4	0.0e+00
WP_160286530.1|2077733_2078270_+	hypothetical protein	NA	A0A2H4J8A5	uncultured_Caudovirales_phage	45.3	9.9e-21
WP_160286531.1|2078533_2078878_+|holin	holin	holin	A0A2H4J893	uncultured_Caudovirales_phage	55.1	2.2e-26
WP_160286532.1|2078874_2079630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286533.1|2079814_2080342_+|terminase	terminase small subunit	terminase	A0A2D1GMW4	Marinobacter_phage	40.5	1.4e-22
WP_160286534.1|2080385_2082272_+|terminase	phage terminase large subunit family protein	terminase	A0A2D1GMT1	Marinobacter_phage	49.6	3.6e-166
WP_160286535.1|2082281_2082500_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286536.1|2082502_2084113_+|portal	phage portal protein	portal	A0A067ZJA4	Vibrio_phage	38.0	1.1e-83
WP_160286537.1|2084115_2085342_+	S49 family peptidase	NA	A0A219YAK4	Aeromonas_phage	40.4	3.4e-48
WP_160286538.1|2085353_2085704_+|head	head decoration protein	head	A0A291AUM0	Sinorhizobium_phage	49.5	1.6e-19
WP_160286539.1|2085719_2086751_+|capsid	major capsid protein	capsid	A0A0C5ABI0	Bacteriophage	41.4	4.2e-68
>prophage 5
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	2098205	2105470	6095635		Burkholderia_phage(25.0%)	10	NA	NA
WP_160288902.1|2098205_2099702_+	hypothetical protein	NA	A0A2I7S8R8	Vibrio_phage	26.0	2.0e-23
WP_160286550.1|2099701_2099938_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286551.1|2100126_2100459_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_160286552.1|2100733_2101210_+	hypothetical protein	NA	I6NSS1	Burkholderia_phage	57.8	4.8e-43
WP_160286553.1|2101206_2101734_+	hypothetical protein	NA	A0A0E3M0Y2	Rhodoferax_phage	56.6	6.9e-43
WP_160286554.1|2101880_2102675_+	DNA adenine methylase	NA	C7BGE1	Burkholderia_phage	64.7	5.4e-100
WP_160286555.1|2102717_2102981_+	hypothetical protein	NA	A0A0U1W088	Pseudomonas_phage	44.2	5.9e-11
WP_160288903.1|2102977_2103688_-	SOS response-associated peptidase	NA	A0A2H4J991	uncultured_Caudovirales_phage	34.5	5.9e-21
WP_052355199.1|2103777_2104209_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A2H4J538	uncultured_Caudovirales_phage	47.5	4.2e-22
WP_160286556.1|2104201_2105470_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	53.0	1.0e-116
>prophage 6
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	2482616	2564488	6095635	integrase,transposase,plate,head,tail,holin	uncultured_Caudovirales_phage(57.45%)	87	2490869:2490890	2564677:2564698
WP_160286781.1|2482616_2484053_-|transposase	IS1182 family transposase	transposase	NA	NA	NA	NA
WP_160286782.1|2484346_2486383_+	acyltransferase	NA	W6MVL2	Pseudomonas_phage	34.4	2.5e-48
WP_160286783.1|2486731_2487124_+	GFA family protein	NA	NA	NA	NA	NA
WP_160286784.1|2487120_2488080_-	lipoyl synthase	NA	NA	NA	NA	NA
WP_160286785.1|2488179_2489301_-	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA	NA
WP_160286786.1|2489351_2490728_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
2490869:2490890	attL	TTCGTAGGAGCGAGCTTGCTCG	NA	NA	NA	NA
WP_160286787.1|2490956_2492210_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	54.5	2.6e-104
WP_160286788.1|2492272_2495146_-	aminomethyl-transferring glycine dehydrogenase	NA	E3ST28	Prochlorococcus_phage	50.8	5.0e-260
WP_160286789.1|2495156_2495528_-	glycine cleavage system protein GcvH	NA	NA	NA	NA	NA
WP_160286790.1|2495859_2497380_-	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_160286791.1|2497406_2498321_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160286792.1|2498718_2499690_+	agmatinase	NA	NA	NA	NA	NA
WP_160286793.1|2499751_2501260_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_160286794.1|2501393_2502899_+	allantoin permease	NA	NA	NA	NA	NA
WP_160286795.1|2502936_2504622_+|holin	choline dehydrogenase	holin	A0A1V0SI18	Klosneuvirus	31.0	1.5e-59
WP_160286796.1|2504641_2505163_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_160286797.1|2505174_2505798_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160286798.1|2506116_2507250_+	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_160286799.1|2507252_2508752_+	multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_160286800.1|2508771_2510259_+	efflux transporter outer membrane subunit	NA	NA	NA	NA	NA
WP_160286801.1|2510356_2511295_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	34.0	9.1e-38
WP_160286802.1|2511395_2512322_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160286803.1|2512381_2512648_-	DUF2790 domain-containing protein	NA	NA	NA	NA	NA
WP_160286804.1|2512825_2513884_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_160286805.1|2514170_2515718_+	long-chain fatty acid--CoA ligase	NA	Q75ZG1	Hepacivirus	29.2	1.5e-40
WP_160286806.1|2515729_2516899_+	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_160286807.1|2516952_2518227_+	MFS transporter	NA	NA	NA	NA	NA
WP_160286808.1|2518227_2519163_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160286809.1|2519452_2521303_+	DUF1302 domain-containing protein	NA	NA	NA	NA	NA
WP_160286810.1|2521319_2522672_+	DUF1329 domain-containing protein	NA	NA	NA	NA	NA
WP_160286811.1|2522673_2523054_+	DUF202 domain-containing protein	NA	NA	NA	NA	NA
WP_160286812.1|2523050_2523359_+	DUF202 domain-containing protein	NA	NA	NA	NA	NA
WP_160286813.1|2523361_2524249_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160286814.1|2524442_2524868_+	glyoxalase	NA	NA	NA	NA	NA
WP_160286815.1|2524952_2525882_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160286816.1|2525872_2526319_-	heme-binding protein	NA	NA	NA	NA	NA
WP_160286817.1|2526321_2527665_-	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_160286818.1|2527925_2528306_+	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_160286819.1|2528549_2528924_-	DUF1353 domain-containing protein	NA	A0A1S5R1J9	Pseudomonas_phage	52.5	5.8e-28
WP_160286820.1|2528920_2529439_-	DUF4376 domain-containing protein	NA	A0A1S5R1J2	Pseudomonas_phage	41.7	4.9e-17
WP_160286821.1|2530296_2531769_-	DUF2313 domain-containing protein	NA	A0A0F7L427	uncultured_marine_virus	32.8	1.5e-15
WP_160286822.1|2531765_2532836_-|plate	baseplate J/gp47 family protein	plate	A0A2H4JC98	uncultured_Caudovirales_phage	43.2	1.5e-68
WP_160286823.1|2532837_2533188_-	hypothetical protein	NA	A0A2H4JDR8	uncultured_Caudovirales_phage	66.4	1.9e-36
WP_160288918.1|2533254_2533779_-|plate	phage baseplate assembly protein	plate	A0A2H4JFE0	uncultured_Caudovirales_phage	67.2	7.8e-63
WP_160286824.1|2533796_2534915_-|tail	phage tail protein	tail	A0A2H4J9E6	uncultured_Caudovirales_phage	73.5	1.5e-159
WP_160286825.1|2534898_2536224_-	hypothetical protein	NA	A0A2H4JGT4	uncultured_Caudovirales_phage	56.7	1.3e-141
WP_160286826.1|2536220_2538479_-|tail	phage tail tape measure protein	tail	A0A2H4JC53	uncultured_Caudovirales_phage	59.9	3.7e-226
WP_160286827.1|2538568_2539012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286828.1|2539157_2539508_-	hypothetical protein	NA	A0A2H4JD25	uncultured_Caudovirales_phage	72.4	1.8e-39
WP_160286829.1|2539512_2539884_-|tail	phage tail protein	tail	A0A2H4J9F8	uncultured_Caudovirales_phage	82.9	9.4e-55
WP_160286830.1|2539902_2541000_-|tail	phage tail protein	tail	A0A2H4JFT7	uncultured_Caudovirales_phage	77.3	3.6e-150
WP_160286831.1|2541262_2541829_-	DUF1834 family protein	NA	A0A2H4JEC0	uncultured_Caudovirales_phage	66.5	2.1e-66
WP_160286832.1|2541828_2542320_-	DUF1320 domain-containing protein	NA	A0A2H4JB66	uncultured_Caudovirales_phage	63.8	6.0e-49
WP_160286833.1|2542482_2542896_-	hypothetical protein	NA	A0A2H4J7W4	uncultured_Caudovirales_phage	60.8	1.5e-08
WP_160286834.1|2542910_2543819_-|head	head protein	head	A0A2H4J778	uncultured_Caudovirales_phage	81.8	2.1e-140
WP_160286835.1|2543842_2544238_-	hypothetical protein	NA	A0A0U5KRP3	unidentified_phage	69.2	1.4e-43
WP_160286836.1|2544241_2545222_-	hypothetical protein	NA	A0A2H4J9A2	uncultured_Caudovirales_phage	60.6	4.1e-105
WP_160286837.1|2545468_2546041_-	phage virion morphogenesis protein	NA	A0A2H4J9E5	uncultured_Caudovirales_phage	73.8	1.5e-67
WP_160286838.1|2546148_2546370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286839.1|2546394_2547684_-	hypothetical protein	NA	A0A2H4IYU7	uncultured_Caudovirales_phage	71.2	3.6e-178
WP_160286840.1|2547734_2548097_+	hypothetical protein	NA	NA	NA	NA	NA
WP_160286841.1|2548099_2549653_-	DUF935 domain-containing protein	NA	A0A2H4JGA9	uncultured_Caudovirales_phage	76.6	1.4e-229
WP_160286842.1|2549652_2551347_-	hypothetical protein	NA	A0A219VH72	Ochrobactrum_phage	43.2	5.2e-100
WP_160286843.1|2551349_2551868_-	DUF3486 family protein	NA	A0A2H4JD50	uncultured_Caudovirales_phage	56.7	9.8e-42
WP_160286844.1|2551869_2552181_-	hypothetical protein	NA	A0A2H4JGU5	uncultured_Caudovirales_phage	70.0	1.3e-36
WP_160286845.1|2552173_2552485_-	hypothetical protein	NA	Q6QIC4	Burkholderia_phage	58.2	2.1e-23
WP_160286846.1|2552481_2553093_-	DNA-packaging protein	NA	A0A2H4JEG6	uncultured_Caudovirales_phage	43.1	1.2e-25
WP_160286847.1|2553089_2553707_-	transglycosylase SLT domain-containing protein	NA	A0A2H4J7R8	uncultured_Caudovirales_phage	68.9	4.9e-80
WP_160288919.1|2553708_2553963_-	hypothetical protein	NA	J9STQ9	Pseudomonas_phage	57.6	5.7e-19
WP_160286848.1|2553992_2554334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286849.1|2554454_2554868_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286850.1|2554872_2555304_-	transcriptional regulator	NA	A0A2H4J0B0	uncultured_Caudovirales_phage	56.5	3.5e-37
WP_160286851.1|2555300_2555708_-	regulatory protein GemA	NA	A0A2H4J581	uncultured_Caudovirales_phage	57.5	7.7e-34
WP_160286852.1|2555704_2555983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286853.1|2555992_2556667_-	DUF2786 domain-containing protein	NA	L7P7W8	Pseudomonas_phage	74.1	3.1e-88
WP_160286854.1|2556743_2556995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286855.1|2556991_2557333_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160286856.1|2557334_2557619_-	hypothetical protein	NA	A0A0U5KRI9	unidentified_phage	78.7	9.8e-36
WP_160286857.1|2557621_2557930_-	hypothetical protein	NA	Q6TM88	Pseudomonas_phage	72.3	5.5e-32
WP_160286858.1|2557932_2558550_-	DUF3164 family protein	NA	A0A0A1IVF8	Pseudomonas_phage	73.0	7.5e-81
WP_160286859.1|2558567_2558888_-	hypothetical protein	NA	H6V800	Pseudomonas_virus	63.4	6.7e-25
WP_160286860.1|2558871_2559255_-	hypothetical protein	NA	A0A0A1IWY8	Pseudomonas_phage	60.2	4.7e-33
WP_160286861.1|2560006_2560726_-	AAA family ATPase	NA	A0A2H4J809	uncultured_Caudovirales_phage	70.3	1.8e-94
WP_160286862.1|2560743_2562804_-|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A2H4JEQ4	uncultured_Caudovirales_phage	52.5	6.2e-196
WP_160286863.1|2562800_2563241_-	hypothetical protein	NA	L7P804	Pseudomonas_phage	67.6	1.6e-45
WP_160286864.1|2563243_2563582_-	transcriptional regulator	NA	A0A2H4J3B6	uncultured_Caudovirales_phage	54.1	1.6e-24
WP_160286865.1|2563753_2564488_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J7C3	uncultured_Caudovirales_phage	63.9	4.3e-75
2564677:2564698	attR	CGAGCAAGCTCGCTCCTACGAA	NA	NA	NA	NA
>prophage 7
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	3592693	3603723	6095635	tRNA	uncultured_Caudovirales_phage(87.5%)	14	NA	NA
WP_160288955.1|3592693_3593407_-	serine/threonine protein phosphatase	NA	A0A2H4J0P0	uncultured_Caudovirales_phage	52.2	5.6e-64
WP_160287532.1|3593537_3593750_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160287533.1|3593914_3594784_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_160287534.1|3594903_3595929_+	zinc-binding dehydrogenase	NA	NA	NA	NA	NA
WP_160287535.1|3596306_3596972_+	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	79.4	6.6e-83
WP_160287536.1|3597087_3597480_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	77.5	1.3e-51
WP_043253216.1|3597479_3597839_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	60.8	4.4e-33
WP_160287537.1|3597838_3598138_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	62.7	1.2e-23
WP_160287538.1|3598134_3598470_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	71.2	2.9e-39
WP_160287539.1|3598466_3599465_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	74.0	1.0e-140
WP_160287540.1|3599553_3600555_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_043257445.1|3600708_3601041_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_160287541.1|3601055_3602441_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_160287542.1|3602442_3603723_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.4	7.4e-99
>prophage 8
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	3608396	3617063	6095635	protease,transposase,tRNA	Orpheovirus(16.67%)	9	NA	NA
WP_043253226.1|3608396_3609350_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	44.5	1.2e-64
WP_160287544.1|3609387_3610068_+|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_043253228.1|3610123_3610831_+	arginyltransferase	NA	NA	NA	NA	NA
WP_002553999.1|3610934_3611153_+	translation initiation factor IF-1	NA	NA	NA	NA	NA
WP_160287545.1|3611235_3613509_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.5	2.4e-164
WP_043257449.1|3613537_3613900_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	43.2	2.8e-11
WP_043253229.1|3614130_3614406_+	cold shock domain-containing protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.7	2.2e-16
WP_156958000.1|3614527_3615749_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	28.0	6.0e-13
WP_160287546.1|3615809_3617063_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	79.6	4.1e-17
>prophage 9
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	4392609	4402310	6095635		Micromonas_sp._RCC1109_virus(28.57%)	8	NA	NA
WP_160287978.1|4392609_4394370_-	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	50.1	1.4e-132
WP_160287979.1|4394571_4395198_+	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L6K4	Tupanvirus	38.8	2.1e-22
WP_160287980.1|4395207_4396566_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	37.6	2.0e-70
WP_160287981.1|4396702_4397815_+	CapA family protein	NA	S4VS02	Pandoravirus	51.6	1.3e-99
WP_160287982.1|4397827_4399447_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	49.5	2.8e-143
WP_160287983.1|4399557_4400106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_160287984.1|4400356_4401391_-	4-hydroxy-2-oxovalerate aldolase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	33.7	2.7e-43
WP_043254150.1|4401401_4402310_-	acetaldehyde dehydrogenase (acetylating)	NA	E5EQ71	Micromonas_sp._RCC1109_virus	36.5	9.2e-35
>prophage 10
NZ_CP047698	Pseudomonas knackmussii strain N1-2 chromosome, complete genome	6095635	4734887	4742880	6095635		uncultured_Caudovirales_phage(28.57%)	10	NA	NA
WP_043254527.1|4734887_4736096_-	nicotinate phosphoribosyltransferase	NA	A0A2L0UZQ6	Agrobacterium_phage	32.8	6.9e-46
WP_084166701.1|4736185_4736416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_043254528.1|4736412_4737117_-	InaA protein	NA	NA	NA	NA	NA
WP_043254530.1|4737119_4737791_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_160288149.1|4737872_4739150_-	HAMP domain-containing histidine kinase	NA	A0A2K9L5I4	Tupanvirus	26.4	9.3e-09
WP_043254537.1|4739139_4739823_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.6	5.6e-29
WP_043254540.1|4739950_4740274_-	DUF190 domain-containing protein	NA	A0A2H4J2R0	uncultured_Caudovirales_phage	46.2	8.9e-25
WP_160288150.1|4740290_4740674_-	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	70.9	2.0e-36
WP_043254544.1|4740896_4742537_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	65.3	5.6e-176
WP_043254546.1|4742586_4742880_-	co-chaperone GroES	NA	A0A221S322	uncultured_virus	38.9	1.6e-12
