assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009909505.1_ASM990950v1	NZ_CP047662	Escherichia coli strain LD93-1 chromosome, complete genome	1	1163044-1163140	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	NA,NA	NA|454aa|up_9|NZ_CP047662.1_1150824_1152186_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP047662.1_1152242_1153544_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP047662.1_1153565_1154711_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP047662.1_1154938_1155724_-	COG3257, GlxB, Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]	NA|412aa|up_5|NZ_CP047662.1_1155734_1156970_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP047662.1_1156991_1158041_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP047662.1_1158357_1160025_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP047662.1_1160034_1161294_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP047662.1_1161304_1162120_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP047662.1_1162116_1163010_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP047662.1_1163204_1164272_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP047662.1_1164268_1164778_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP047662.1_1164895_1165618_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP047662.1_1165620_1166115_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP047662.1_1166288_1167674_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP047662.1_1167709_1168231_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP047662.1_1168338_1168551_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP047662.1_1168552_1169419_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP047662.1_1169889_1170432_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP047662.1_1170651_1171344_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_009909505.1_ASM990950v1	NZ_CP047662	Escherichia coli strain LD93-1 chromosome, complete genome	2	1529820-1530024	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	Orphan	GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA,GTTCACTGCCGTACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	NA,NA	NA|551aa|up_9|NZ_CP047662.1_1516267_1517920_-	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|300aa|up_8|NZ_CP047662.1_1518063_1518963_-	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|232aa|up_7|NZ_CP047662.1_1519419_1520115_-	PRK05420, PRK05420, aquaporin Z; Provisional	NA|553aa|up_6|NZ_CP047662.1_1520540_1522199_+	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|319aa|up_5|NZ_CP047662.1_1522195_1523152_-	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|372aa|up_4|NZ_CP047662.1_1523302_1524418_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|up_3|NZ_CP047662.1_1524414_1526361_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|75aa|up_2|NZ_CP047662.1_1526433_1526658_-	PRK09937, PRK09937, cold shock-like protein CspD	NA|107aa|up_1|NZ_CP047662.1_1526980_1527301_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|759aa|up_0|NZ_CP047662.1_1527331_1529608_+	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|73aa|down_0|NZ_CP047662.1_1530408_1530627_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|235aa|down_1|NZ_CP047662.1_1530911_1531616_-	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|574aa|down_2|NZ_CP047662.1_1531657_1533379_-	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|589aa|down_3|NZ_CP047662.1_1533379_1535146_-	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|322aa|down_4|NZ_CP047662.1_1535268_1536234_-	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|165aa|down_5|NZ_CP047662.1_1536778_1537273_+	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|1330aa|down_6|NZ_CP047662.1_1537407_1541397_+	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|204aa|down_7|NZ_CP047662.1_1541551_1542163_+	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|448aa|down_8|NZ_CP047662.1_1542173_1543517_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|431aa|down_9|NZ_CP047662.1_1543607_1544900_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional
GCF_009909505.1_ASM990950v1	NZ_CP047662	Escherichia coli strain LD93-1 chromosome, complete genome	3	3087941-3088067	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	NA,NA	NA|395aa|up_9|NZ_CP047662.1_3066848_3068033_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP047662.1_3068106_3068883_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP047662.1_3068887_3070537_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP047662.1_3070537_3074932_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP047662.1_3075075_3075699_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP047662.1_3075695_3077384_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP047662.1_3077532_3080160_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP047662.1_3080306_3081029_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP047662.1_3081156_3084909_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP047662.1_3085604_3087890_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP047662.1_3088123_3089254_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP047662.1_3089253_3089508_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP047662.1_3089561_3090212_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|359aa|down_3|NZ_CP047662.1_3090674_3091751_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_4|NZ_CP047662.1_3091755_3093114_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_5|NZ_CP047662.1_3093386_3095015_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_6|NZ_CP047662.1_3095004_3096264_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_7|NZ_CP047662.1_3096260_3097451_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|301aa|down_8|NZ_CP047662.1_3097643_3098546_+	PRK09956, PRK09956, ISNCY family transposase	NA|268aa|down_9|NZ_CP047662.1_3098586_3099390_-	PRK10128, PRK10128, 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
GCF_009909505.1_ASM990950v1	NZ_CP047662	Escherichia coli strain LD93-1 chromosome, complete genome	4	3585174-3585751	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2,cas1,cas6e,cas5	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	Unclear	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACNC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	NA,NA	NA|254aa|up_9|NZ_CP047662.1_3576986_3577748_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP047662.1_3577728_3578778_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP047662.1_3578774_3579254_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP047662.1_3579253_3579964_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP047662.1_3579982_3580294_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP047662.1_3580487_3580811_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP047662.1_3580860_3581466_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP047662.1_3581465_3582893_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP047662.1_3582894_3583803_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP047662.1_3584054_3585092_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP047662.1_3585856_3586141_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP047662.1_3586142_3587060_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP047662.1_3587075_3587675_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP047662.1_3587661_3588336_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	NA|245aa|down_4|NZ_CP047662.1_3590843_3591578_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_5|NZ_CP047662.1_3591651_3593364_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_6|NZ_CP047662.1_3593363_3595163_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_7|NZ_CP047662.1_3595478_3595844_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_8|NZ_CP047662.1_3595921_3597193_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|down_9|NZ_CP047662.1_3597183_3597444_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_009909505.1_ASM990950v1	NZ_CP047662	Escherichia coli strain LD93-1 chromosome, complete genome	5	3608066-3609866	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACAC,GGTTTATCCCCGCTGGCGCGGGGAACAC	29,29,28	0	0	NA	NA	I-E:I-E:I-E	29,29,29	29	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,WYL,csa3,cas2,cas1,cas6e,cas5	NA,NA|47aa|down_1|NZ_CP047662.1_3611015_3611156_+	NA|424aa|up_9|NZ_CP047662.1_3595921_3597193_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP047662.1_3597183_3597444_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP047662.1_3597460_3598036_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP047662.1_3598183_3599044_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP047662.1_3599040_3599820_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP047662.1_3599797_3601135_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP047662.1_3601228_3602683_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP047662.1_3602752_3603538_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP047662.1_3603856_3605134_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP047662.1_3605160_3606639_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP047662.1_3610205_3610877_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP047662.1_3611015_3611156_+	NA	NA|291aa|down_2|NZ_CP047662.1_3611169_3612042_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP047662.1_3612101_3613400_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP047662.1_3613487_3615125_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP047662.1_3615352_3616144_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP047662.1_3616214_3616550_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP047662.1_3616549_3616798_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP047662.1_3616875_3619110_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP047662.1_3619157_3620459_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
