assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009909305.1_ASM990930v1	NZ_CP047677	Klebsiella pneumoniae subsp. pneumoniae strain KUH-KPNHVF1 chromosome, complete genome	1	1064664-1064803	1	CRISPRCasFinder	no	DEDDh	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Unclear	CTGCTGCTTCAGTTTTGTAGGCCGGGTAAGGCGCCAGCCGCCAGCCGGCA	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|194aa|up_9|NZ_CP047677.1_1056029_1056611_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_8|NZ_CP047677.1_1056685_1057453_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_7|NZ_CP047677.1_1057423_1058164_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|448aa|up_6|NZ_CP047677.1_1058575_1059919_+	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|413aa|up_5|NZ_CP047677.1_1059922_1061161_+	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|265aa|up_4|NZ_CP047677.1_1061153_1061948_+	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|213aa|up_3|NZ_CP047677.1_1061940_1062579_+	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|199aa|up_2|NZ_CP047677.1_1062585_1063182_+	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|408aa|up_1|NZ_CP047677.1_1063194_1064418_+	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|72aa|up_0|NZ_CP047677.1_1064420_1064636_+	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|287aa|down_0|NZ_CP047677.1_1064858_1065719_-	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|352aa|down_1|NZ_CP047677.1_1065878_1066934_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_2|NZ_CP047677.1_1066936_1067389_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|486aa|down_3|NZ_CP047677.1_1067431_1068889_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_4|NZ_CP047677.1_1069146_1069605_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_5|NZ_CP047677.1_1069710_1070955_+	PRK05077, frsA, esterase FrsA	NA|133aa|down_6|NZ_CP047677.1_1071012_1071411_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|231aa|down_7|NZ_CP047677.1_1071496_1072189_-	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional	NA|467aa|down_8|NZ_CP047677.1_1072234_1073635_-	PRK10197, PRK10197, GABA permease	NA|428aa|down_9|NZ_CP047677.1_1073770_1075054_-	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase
GCF_009909305.1_ASM990930v1	NZ_CP047677	Klebsiella pneumoniae subsp. pneumoniae strain KUH-KPNHVF1 chromosome, complete genome	2	1691699-1691776	2	CRISPRCasFinder	no		DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Orphan	AAGGCGTCAGCCGCCGCCCGGCA	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA|71aa|down_7|NZ_CP047677.1_1698377_1698590_-,NA|31aa|down_9|NZ_CP047677.1_1701200_1701293_+	NA|362aa|up_9|NZ_CP047677.1_1676755_1677841_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|144aa|up_8|NZ_CP047677.1_1678374_1678806_+	PRK15456, PRK15456, universal stress protein UspG; Provisional	NA|896aa|up_7|NZ_CP047677.1_1678857_1681545_+	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp	NA|428aa|up_6|NZ_CP047677.1_1681818_1683102_-	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|406aa|up_5|NZ_CP047677.1_1683358_1684576_+	PRK09356, PRK09356, imidazolonepropionase; Validated	NA|319aa|up_4|NZ_CP047677.1_1684572_1685529_+	PRK01722, PRK01722, formimidoylglutamase; Provisional	NA|242aa|up_3|NZ_CP047677.1_1685590_1686316_+	PRK14999, PRK14999, histidine utilization repressor; Provisional	NA|563aa|up_2|NZ_CP047677.1_1686458_1688147_+	PRK05414, PRK05414, urocanate hydratase; Provisional	NA|509aa|up_1|NZ_CP047677.1_1688143_1689670_+	PRK09367, PRK09367, histidine ammonia-lyase; Provisional	NA|461aa|up_0|NZ_CP047677.1_1689768_1691151_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|159aa|down_0|NZ_CP047677.1_1691928_1692405_-	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|430aa|down_1|NZ_CP047677.1_1692475_1693765_-	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|347aa|down_2|NZ_CP047677.1_1693978_1695019_+	PRK15108, PRK15108, biotin synthase; Provisional	NA|386aa|down_3|NZ_CP047677.1_1695015_1696173_+	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|252aa|down_4|NZ_CP047677.1_1696156_1696912_+	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|241aa|down_5|NZ_CP047677.1_1696904_1697627_+	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|241aa|down_6|NZ_CP047677.1_1697568_1698291_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|71aa|down_7|NZ_CP047677.1_1698377_1698590_-	NA	NA|674aa|down_8|NZ_CP047677.1_1699001_1701023_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|31aa|down_9|NZ_CP047677.1_1701200_1701293_+	NA
GCF_009909305.1_ASM990930v1	NZ_CP047677	Klebsiella pneumoniae subsp. pneumoniae strain KUH-KPNHVF1 chromosome, complete genome	3	3050501-3051443	1,1,3	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC,GAAACACCCCCACGTGCGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	15,14,14	15	TypeI-E	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|77aa|up_9|NZ_CP047677.1_3041309_3041540_-	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]	NA|246aa|up_8|NZ_CP047677.1_3041536_3042274_-	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|220aa|up_7|NZ_CP047677.1_3042323_3042983_-	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|208aa|up_6|NZ_CP047677.1_3042979_3043603_-	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|446aa|up_5|NZ_CP047677.1_3043686_3045024_-	pfam00034, Cytochrom_C, Cytochrome c	NA|595aa|up_4|NZ_CP047677.1_3045037_3046822_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|251aa|up_3|NZ_CP047677.1_3046824_3047577_-	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|124aa|up_2|NZ_CP047677.1_3048081_3048453_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|228aa|up_1|NZ_CP047677.1_3048513_3049197_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_0|NZ_CP047677.1_3049207_3050323_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|down_0|NZ_CP047677.1_3051490_3051778_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|down_1|NZ_CP047677.1_3051755_3052631_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|down_2|NZ_CP047677.1_3052630_3053326_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|down_3|NZ_CP047677.1_3053359_3054394_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|down_4|NZ_CP047677.1_3054423_3055071_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|down_5|NZ_CP047677.1_3055063_3055630_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|down_6|NZ_CP047677.1_3055641_3057165_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|799aa|down_7|NZ_CP047677.1_3057168_3059565_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_8|NZ_CP047677.1_3060965_3062036_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_9|NZ_CP047677.1_3062028_3063798_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]
GCF_009909305.1_ASM990930v1	NZ_CP047677	Klebsiella pneumoniae subsp. pneumoniae strain KUH-KPNHVF1 chromosome, complete genome	4	3060197-3060713	4,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e,cas3	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	Type I-E	GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC,GAAACACCCCCACGCGTGTGGGGAAGAC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	8,8,5	8	TypeI-E	DEDDh,RT,cas3,WYL,DinG,csa3,cas2,cas1,cas5,cas7,cas6e,cse2gr11,cas8e	NA,NA	NA|228aa|up_9|NZ_CP047677.1_3048513_3049197_-	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|372aa|up_8|NZ_CP047677.1_3049207_3050323_-	PHA02053, PHA02053, hypothetical protein	cas2|96aa|up_7|NZ_CP047677.1_3051490_3051778_-	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	cas1|292aa|up_6|NZ_CP047677.1_3051755_3052631_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|232aa|up_5|NZ_CP047677.1_3052630_3053326_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|345aa|up_4|NZ_CP047677.1_3053359_3054394_-	pfam09344, Cas_CT1975, CT1975-like protein	cas6e|216aa|up_3|NZ_CP047677.1_3054423_3055071_-	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cse2gr11|189aa|up_2|NZ_CP047677.1_3055063_3055630_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|508aa|up_1|NZ_CP047677.1_3055641_3057165_-	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cas3|799aa|up_0|NZ_CP047677.1_3057168_3059565_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|357aa|down_0|NZ_CP047677.1_3060965_3062036_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|590aa|down_1|NZ_CP047677.1_3062028_3063798_-	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|363aa|down_2|NZ_CP047677.1_3063871_3064960_-	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|360aa|down_3|NZ_CP047677.1_3065262_3066342_+	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|717aa|down_4|NZ_CP047677.1_3066589_3068740_+	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|386aa|down_5|NZ_CP047677.1_3068782_3069940_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|400aa|down_6|NZ_CP047677.1_3070235_3071435_+	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|145aa|down_7|NZ_CP047677.1_3071551_3071986_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|down_8|NZ_CP047677.1_3072551_3073784_+	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|131aa|down_9|NZ_CP047677.1_3073820_3074213_+	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family
