assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009905355.1_ASM990535v1	NZ_CP047594	Escherichia coli strain LD27-1 chromosome, complete genome	1	447600-447749	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|536aa|up_6|NZ_CP047594.1_438827_440435_+,NA	NA|238aa|up_9|NZ_CP047594.1_436730_437444_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP047594.1_437514_438108_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|151aa|up_7|NZ_CP047594.1_438252_438705_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|536aa|up_6|NZ_CP047594.1_438827_440435_+	NA	NA|335aa|up_5|NZ_CP047594.1_440559_441564_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP047594.1_441725_442142_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP047594.1_442187_442691_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP047594.1_442883_444080_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP047594.1_444133_446989_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP047594.1_446988_447432_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP047594.1_447785_449297_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP047594.1_449563_450664_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP047594.1_450663_451746_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP047594.1_451864_453367_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP047594.1_453496_454516_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|422aa|down_5|NZ_CP047594.1_454982_456248_+	PRK09692, PRK09692, integrase; Provisional	NA|500aa|down_6|NZ_CP047594.1_456571_458071_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|247aa|down_7|NZ_CP047594.1_458244_458985_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|550aa|down_8|NZ_CP047594.1_459597_461247_+	TIGR03238, dnd_assoc_3, DNA phosphorothioation-dependent restriction protein DptF	NA|442aa|down_9|NZ_CP047594.1_461251_462577_+	TIGR03236, dnd_assoc_1, DNA phosphorothioation-dependent restriction protein DptG
GCF_009905355.1_ASM990535v1	NZ_CP047594	Escherichia coli strain LD27-1 chromosome, complete genome	2	1018490-1018634	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|28aa|up_2|NZ_CP047594.1_1016360_1016444_+,NA	NA|372aa|up_9|NZ_CP047594.1_1011116_1012232_+	PRK10245, adrA, diguanylate cyclase AdrA; Provisional	NA|270aa|up_8|NZ_CP047594.1_1012248_1013058_-	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|153aa|up_7|NZ_CP047594.1_1013177_1013636_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|175aa|up_6|NZ_CP047594.1_1013818_1014343_+	PRK03731, aroL, shikimate kinase AroL	NA|64aa|up_5|NZ_CP047594.1_1014392_1014584_+	PRK10380, PRK10380, hypothetical protein; Provisional	NA|226aa|up_4|NZ_CP047594.1_1014841_1015519_+	PRK10481, PRK10481, hypothetical protein; Provisional	NA|95aa|up_3|NZ_CP047594.1_1015590_1015875_+	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|28aa|up_2|NZ_CP047594.1_1016360_1016444_+	NA	NA|304aa|up_1|NZ_CP047594.1_1016521_1017433_-	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|303aa|up_0|NZ_CP047594.1_1017557_1018466_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|395aa|down_0|NZ_CP047594.1_1018710_1019895_-	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|1049aa|down_1|NZ_CP047594.1_1020020_1023167_-	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|401aa|down_2|NZ_CP047594.1_1023163_1024366_-	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|230aa|down_3|NZ_CP047594.1_1024555_1025245_+	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|432aa|down_4|NZ_CP047594.1_1025302_1026598_+	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|440aa|down_5|NZ_CP047594.1_1027004_1028324_+	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|458aa|down_6|NZ_CP047594.1_1028399_1029773_+	PRK10580, proY, putative proline-specific permease; Provisional	NA|606aa|down_7|NZ_CP047594.1_1029928_1031746_+	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|194aa|down_8|NZ_CP047594.1_1031750_1032332_-	PRK10045, PRK10045, ACP phosphodiesterase	NA|357aa|down_9|NZ_CP047594.1_1032424_1033495_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional
GCF_009905355.1_ASM990535v1	NZ_CP047594	Escherichia coli strain LD27-1 chromosome, complete genome	3	1158780-1158876	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	GCTTGACGCGTCTTATCAGGCCTACAA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|454aa|up_9|NZ_CP047594.1_1146560_1147922_+	PRK08044, PRK08044, allantoinase AllB	NA|434aa|up_8|NZ_CP047594.1_1147978_1149280_+	PRK11412, PRK11412, uracil/xanthine transporter	NA|382aa|up_7|NZ_CP047594.1_1149301_1150447_+	PRK09932, PRK09932, glycerate 3-kinase	NA|262aa|up_6|NZ_CP047594.1_1150674_1151460_-	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|412aa|up_5|NZ_CP047594.1_1151470_1152706_-	TIGR03176, AllC, allantoate amidohydrolase	NA|350aa|up_4|NZ_CP047594.1_1152727_1153777_-	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|556aa|up_3|NZ_CP047594.1_1154093_1155761_+	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|420aa|up_2|NZ_CP047594.1_1155770_1157030_+	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|272aa|up_1|NZ_CP047594.1_1157040_1157856_+	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|298aa|up_0|NZ_CP047594.1_1157852_1158746_+	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|356aa|down_0|NZ_CP047594.1_1158940_1160008_-	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|170aa|down_1|NZ_CP047594.1_1160004_1160514_-	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|241aa|down_2|NZ_CP047594.1_1160631_1161354_-	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|165aa|down_3|NZ_CP047594.1_1161356_1161851_-	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|462aa|down_4|NZ_CP047594.1_1162024_1163410_+	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|174aa|down_5|NZ_CP047594.1_1163445_1163967_-	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|71aa|down_6|NZ_CP047594.1_1164074_1164287_-	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|289aa|down_7|NZ_CP047594.1_1164288_1165155_-	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|181aa|down_8|NZ_CP047594.1_1165625_1166168_+	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|231aa|down_9|NZ_CP047594.1_1166387_1167080_+	PRK15195, PRK15195, molecular chaperone FimC
GCF_009905355.1_ASM990535v1	NZ_CP047594	Escherichia coli strain LD27-1 chromosome, complete genome	4	3467101-3467801	4,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	11,11,8	11	TypeI-E	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP047594.1_3458912_3459674_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP047594.1_3459654_3460704_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP047594.1_3460700_3461180_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP047594.1_3461179_3461890_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP047594.1_3461908_3462220_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP047594.1_3462413_3462737_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP047594.1_3462786_3463392_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP047594.1_3463391_3464819_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP047594.1_3464820_3465729_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP047594.1_3465980_3467018_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|95aa|down_0|NZ_CP047594.1_3467906_3468191_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|306aa|down_1|NZ_CP047594.1_3468192_3469110_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|200aa|down_2|NZ_CP047594.1_3469125_3469725_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|225aa|down_3|NZ_CP047594.1_3469711_3470386_-	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas7|364aa|down_4|NZ_CP047594.1_3470388_3471480_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|161aa|down_5|NZ_CP047594.1_3471492_3471975_-	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|503aa|down_6|NZ_CP047594.1_3471967_3473476_-	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cas3|889aa|down_7|NZ_CP047594.1_3473890_3476557_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|245aa|down_8|NZ_CP047594.1_3476915_3477650_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_9|NZ_CP047594.1_3477724_3479437_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
GCF_009905355.1_ASM990535v1	NZ_CP047594	Escherichia coli strain LD27-1 chromosome, complete genome	5	3493352-3493745	2,2,5	PILER-CR,CRT,CRISPRCasFinder	no	cas3	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCGCTGGCGCGGGGAAC,GGTTTATCCCCGCTGGCGCGGGGAACAC,TTTATCCCCGCTGGCGCGGGGAACAC	26,28,26	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	DEDDh,csa3,WYL,DinG,cas3,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|47aa|down_1|NZ_CP047594.1_3494894_3495035_+	NA|424aa|up_9|NZ_CP047594.1_3481994_3483266_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_8|NZ_CP047594.1_3483256_3483517_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_7|NZ_CP047594.1_3483533_3484109_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_6|NZ_CP047594.1_3484256_3485117_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP047594.1_3485113_3485893_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP047594.1_3485870_3487208_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP047594.1_3487301_3488756_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP047594.1_3488825_3489611_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP047594.1_3489929_3491207_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP047594.1_3491233_3492712_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP047594.1_3494084_3494756_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP047594.1_3494894_3495035_+	NA	NA|291aa|down_2|NZ_CP047594.1_3495048_3495921_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP047594.1_3495980_3497279_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP047594.1_3497366_3499004_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP047594.1_3499231_3500023_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP047594.1_3500093_3500429_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP047594.1_3500428_3500677_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP047594.1_3500754_3502989_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP047594.1_3503036_3504338_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
