assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009905255.1_ASM990525v1	NZ_CP047602	Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome	1	150846-154532	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	Type I-B	GTTTTTAGCCTACCTATAAGGAATTGAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAAC,GTTTTTAGCCTACCTATAAGGAATTGAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	55,55,55	55	TypeI-B	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	NA|99aa|up_9|NZ_CP047602.1_138511_138808_+,NA	NA|99aa|up_9|NZ_CP047602.1_138511_138808_+	NA	NA|251aa|up_8|NZ_CP047602.1_139049_139802_+	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC	NA|468aa|up_7|NZ_CP047602.1_139815_141219_+	TIGR01980, UPF0051_protein_slr0074, FeS assembly protein SufB	NA|389aa|up_6|NZ_CP047602.1_141232_142399_+	pfam01458, UPF0051, Uncharacterized protein family (UPF0051)	NA|409aa|up_5|NZ_CP047602.1_142398_143625_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|138aa|up_4|NZ_CP047602.1_143621_144035_+	TIGR01994, Iron-sulfur_cluster_assembly_scaffold_protein_IscU, SUF system FeS assembly protein, NifU family	cas8b1|586aa|up_3|NZ_CP047602.1_144895_146653_+	pfam09484, Cas_TM1802, CRISPR-associated protein TM1802 (cas_TM1802)	cas7|304aa|up_2|NZ_CP047602.1_146652_147564_+	TIGR02590, hypothetical_protein_MM_0563, CRISPR-associated protein Cas7/Csh2, subtype I-B/HMARI	cas5|238aa|up_1|NZ_CP047602.1_147627_148341_+	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI	cas3|788aa|up_0|NZ_CP047602.1_148318_150682_+	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|249aa|down_0|NZ_CP047602.1_154544_155291_+	pfam07833, Cu_amine_oxidN1, Copper amine oxidase N-terminal domain	cas4|166aa|down_1|NZ_CP047602.1_155652_156150_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|331aa|down_2|NZ_CP047602.1_156146_157139_+	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas2|88aa|down_3|NZ_CP047602.1_157148_157412_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|169aa|down_4|NZ_CP047602.1_158010_158517_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|742aa|down_5|NZ_CP047602.1_158510_160736_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|624aa|down_6|NZ_CP047602.1_160735_162607_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|283aa|down_7|NZ_CP047602.1_162643_163492_-	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed	NA|563aa|down_8|NZ_CP047602.1_163512_165201_-	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit	NA|271aa|down_9|NZ_CP047602.1_165561_166374_+	cd07733, YycJ-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis YycJ and related proteins; MBL-fold metallo hydrolase domain
GCF_009905255.1_ASM990525v1	NZ_CP047602	Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome	2	804017-804227	2	PILER-CR	no		cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	Orphan	ATAGCTCAGTTGGTAGAGCAACACCCTGCCAAGCTG	36	0	0	NA	NA	NA	2	2	Orphan	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	NA|500aa|up_3|NZ_CP047602.1_801054_802554_+,NA|114aa|down_1|NZ_CP047602.1_805710_806052_-,NA|82aa|down_5|NZ_CP047602.1_808993_809239_+,NA|119aa|down_6|NZ_CP047602.1_809215_809572_-,NA|71aa|down_8|NZ_CP047602.1_809946_810159_+,NA|67aa|down_9|NZ_CP047602.1_810172_810373_+	NA|259aa|up_9|NZ_CP047602.1_796813_797590_+	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|163aa|up_8|NZ_CP047602.1_797642_798131_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|190aa|up_7|NZ_CP047602.1_798146_798716_+	pfam04011, LemA, LemA family	NA|268aa|up_6|NZ_CP047602.1_798728_799532_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|341aa|up_5|NZ_CP047602.1_799528_800551_-	cd02932, OYE_YqiM_FMN, Old yellow enzyme (OYE) YqjM-like FMN binding domain	NA|74aa|up_4|NZ_CP047602.1_800721_800943_+	pfam01106, NifU, NifU-like domain	NA|500aa|up_3|NZ_CP047602.1_801054_802554_+	NA	NA|49aa|up_2|NZ_CP047602.1_802565_802712_+	pfam00269, SASP, Small, acid-soluble spore proteins, alpha/beta type	NA|250aa|up_1|NZ_CP047602.1_802754_803504_+	cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|68aa|up_0|NZ_CP047602.1_803586_803790_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|377aa|down_0|NZ_CP047602.1_804437_805568_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|114aa|down_1|NZ_CP047602.1_805710_806052_-	NA	NA|666aa|down_2|NZ_CP047602.1_806075_808073_-	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase	NA|130aa|down_3|NZ_CP047602.1_808190_808580_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|82aa|down_4|NZ_CP047602.1_808732_808978_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|82aa|down_5|NZ_CP047602.1_808993_809239_+	NA	NA|119aa|down_6|NZ_CP047602.1_809215_809572_-	NA	NA|97aa|down_7|NZ_CP047602.1_809642_809933_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|71aa|down_8|NZ_CP047602.1_809946_810159_+	NA	NA|67aa|down_9|NZ_CP047602.1_810172_810373_+	NA
GCF_009905255.1_ASM990525v1	NZ_CP047602	Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome	3	1071150-1071248	2	CRISPRCasFinder	no		cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	Orphan	GTTGAAAAGTATTGATTTTATGGTGAAAAGGG	32	0	0	NA	NA	NA	1	1	Orphan	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	NA,NA	NA|494aa|up_9|NZ_CP047602.1_1057665_1059147_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|614aa|up_8|NZ_CP047602.1_1059444_1061286_+	TIGR01536, Asparagine_synthetase_1, asparagine synthase (glutamine-hydrolyzing)	NA|68aa|up_7|NZ_CP047602.1_1061399_1061603_+	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI	NA|445aa|up_6|NZ_CP047602.1_1061720_1063055_+	TIGR03356, BGL, beta-galactosidase	NA|311aa|up_5|NZ_CP047602.1_1063268_1064201_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|247aa|up_4|NZ_CP047602.1_1064242_1064983_+	PRK07856, PRK07856, SDR family oxidoreductase	NA|292aa|up_3|NZ_CP047602.1_1065037_1065913_+	pfam08812, YtxC, YtxC-like family	NA|200aa|up_2|NZ_CP047602.1_1065990_1066590_+	COG4399, COG4399, Uncharacterized protein conserved in bacteria [Function unknown]	NA|635aa|up_1|NZ_CP047602.1_1066868_1068773_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|414aa|up_0|NZ_CP047602.1_1068874_1070116_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|171aa|down_0|NZ_CP047602.1_1071421_1071934_+	PRK00028, infC, translation initiation factor IF-3; Reviewed	NA|66aa|down_1|NZ_CP047602.1_1071951_1072149_+	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed	NA|120aa|down_2|NZ_CP047602.1_1072168_1072528_+	PRK05185, rplT, 50S ribosomal protein L20; Provisional	NA|257aa|down_3|NZ_CP047602.1_1072583_1073354_+	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis]	NA|340aa|down_4|NZ_CP047602.1_1073648_1074668_+	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated	NA|794aa|down_5|NZ_CP047602.1_1074680_1077062_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|125aa|down_6|NZ_CP047602.1_1077158_1077533_+	pfam05164, ZapA, Cell division protein ZapA	NA|782aa|down_7|NZ_CP047602.1_1077587_1079933_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|787aa|down_8|NZ_CP047602.1_1079932_1082293_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|237aa|down_9|NZ_CP047602.1_1082344_1083055_+	TIGR02832, conserved_hypothetical_protein, sporulation protein YunB
GCF_009905255.1_ASM990525v1	NZ_CP047602	Thermoanaerobacterium aotearoense strain SCUT27 chromosome, complete genome	4	2635195-2635553	3,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas7,cas3	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	Unclear	GTTTAGGTAGAACCATTGTGGGTTATAAACT,GTTTAGGTAGAACCATTGTGGGTTAT,GTTTAGGTAGAACCATTGTGGGTTATAAAC	31,26,30	0	0	NA	NA	NA:NA:NA	4,5,5	5	Unclear	cas8b1,cas7,cas5,cas3,cas4,cas1,cas2,csa3,DEDDh,DinG,RT,cas6	NA|478aa|up_3|NZ_CP047602.1_2629445_2630879_+,NA|194aa|down_1|NZ_CP047602.1_2636412_2636994_-	NA|420aa|up_9|NZ_CP047602.1_2622249_2623509_-	pfam04932, Wzy_C, O-Antigen ligase	NA|297aa|up_8|NZ_CP047602.1_2623621_2624512_-	pfam14261, DUF4351, Domain of unknown function (DUF4351)	NA|317aa|up_7|NZ_CP047602.1_2624537_2625488_-	pfam14261, DUF4351, Domain of unknown function (DUF4351)	NA|118aa|up_6|NZ_CP047602.1_2625989_2626343_-	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain	NA|461aa|up_5|NZ_CP047602.1_2626818_2628201_-	COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General function prediction only]	cas6|267aa|up_4|NZ_CP047602.1_2628644_2629445_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	NA|478aa|up_3|NZ_CP047602.1_2629445_2630879_+	NA	cas7|348aa|up_2|NZ_CP047602.1_2630985_2632029_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	NA|219aa|up_1|NZ_CP047602.1_2632097_2632754_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|782aa|up_0|NZ_CP047602.1_2632713_2635059_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	NA|163aa|down_0|NZ_CP047602.1_2635847_2636336_-	COG3264, COG3264, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|194aa|down_1|NZ_CP047602.1_2636412_2636994_-	NA	NA|911aa|down_2|NZ_CP047602.1_2637081_2639814_-	pfam03699, UPF0182, Uncharacterized protein family (UPF0182)	NA|409aa|down_3|NZ_CP047602.1_2639951_2641178_+	COG1316, LytR, Transcriptional regulator [Transcription]	NA|424aa|down_4|NZ_CP047602.1_2641526_2642798_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|179aa|down_5|NZ_CP047602.1_2643063_2643600_-	TIGR02227, Inactive_signal_peptidase_IA	NA|355aa|down_6|NZ_CP047602.1_2643999_2645064_+	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI	NA|157aa|down_7|NZ_CP047602.1_2645107_2645578_-	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|397aa|down_8|NZ_CP047602.1_2645601_2646792_-	PRK09311, PRK09311, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|207aa|down_9|NZ_CP047602.1_2646806_2647427_-	PRK09289, PRK09289, riboflavin synthase
