The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP034305	Vibrio parahaemolyticus strain 20151116002-3 chromosome I, complete sequence	3491101	570826	588006	3491101	tRNA	uncultured_Mediterranean_phage(20.0%)	14	NA	NA
WP_005455581.1|570826_572467_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.4	4.2e-155
WP_005455579.1|572545_573847_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	4.2e-134
WP_005455577.1|574256_574538_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_005478544.1|574539_575244_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	A0A2H4UTB4	Bodo_saltans_virus	23.6	5.9e-05
WP_005380896.1|575261_575738_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_021450029.1|575784_576828_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_005478553.1|576827_577604_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.4	5.0e-66
WP_005455562.1|577603_578230_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	1.3e-35
WP_021486791.1|578244_579168_+	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	35.2	4.1e-06
WP_085577166.1|580317_582879_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	24.0	1.2e-34
WP_005455551.1|582963_583446_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	1.7e-27
WP_005478550.1|583646_584690_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.7	8.1e-112
WP_005455548.1|584813_585281_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_005455546.1|585423_588006_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.9	1.0e-78
>prophage 2
NZ_CP034305	Vibrio parahaemolyticus strain 20151116002-3 chromosome I, complete sequence	3491101	1424432	1442669	3491101	integrase,transposase	Vibrio_phage(50.0%)	30	1424379:1424438	1441695:1442748
1424379:1424438	attL	GGCTTTGTTGCGTAATTCAGACGAGAAACCAAACCTCCTAAAGTTGAGCGACTGTTATAC	NA	NA	NA	NA
WP_010446562.1|1424432_1425353_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_005494807.1|1425507_1425600_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_159406345.1|1425646_1426093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062853716.1|1426529_1426769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_053301342.1|1426915_1427362_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031856472.1|1427516_1428227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085576726.1|1428246_1428339_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_031856526.1|1428374_1429085_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025794344.1|1429242_1429527_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_085576750.1|1429555_1429645_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_031856561.1|1429695_1430103_+	OsmC family protein	NA	NA	NA	NA	NA
WP_085576749.1|1430248_1431226_+	RelA/SpoT domain-containing protein	NA	NA	NA	NA	NA
WP_031856560.1|1431925_1432405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031856559.1|1432557_1432974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031856558.1|1433104_1433764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085576765.1|1434055_1434415_+	DUF4145 domain-containing protein	NA	NA	NA	NA	NA
WP_108744543.1|1434429_1434522_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_031856500.1|1434550_1435057_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_085576702.1|1435090_1435168_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_050505327.1|1435192_1435723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085576708.1|1435950_1436715_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_085576707.1|1436729_1436822_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_050505320.1|1436917_1437535_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005494807.1|1438554_1438647_+	DUF3265 domain-containing protein	NA	NA	NA	NA	NA
WP_031856527.1|1439033_1439345_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_085576734.1|1439357_1439531_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	51.0	7.3e-10
WP_005464493.1|1439527_1439833_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0P0I4A4	Acinetobacter_phage	43.5	5.6e-13
WP_085576735.1|1439772_1439868_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_159406346.1|1441413_1441764_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010446562.1|1441748_1442669_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
1441695:1442748	attR	GGCTTTGTTGCGTAATTCAGACGAGAAACCAAACCTCCTAAAGTTGAGCGACTGTTATACAATATACTGAGTTTCAGGCATACCAAGCCCTGTAAGTTTGTTCAGTGCTTTGATCATGGCGTAAGTCTCGCCAACCTGAGCGTTGTAATTTCTTAGACTTAATTTCCCACCTAGCAACTGTTTTACTCGGTACATTGCGGTCTCTGACAGAGAGCGCTTATGATAGCCATACCGCTTTTTCCACTTCTTGTTGGAGCCGTAGAGCTTCTGGCAACCTACCGCTAAGTTACGAGGATGCCCTTGTTCCCAGAAGGCTGCTCCTTCTCTTGGCGGGATGAGCGGAACAGCTCGCTTGATCCGTATGGCATCATGGCAATTCCTTGTGTCATAAGCGCCATCGCCTGATATCTCAATGATTTTACGACGTGTTTGCTTGAGTAAGTTGGGGAGCACTTCGGCATCAGTTACGTTAGATAAGCTCAGCTCTGCTGCGACTATTTCGTGGGTGCTTGTATCTACCGCGATATGCAGCTTACGCCAGACTCTTCGCTTCCCATCAGTTCCATGCTTCTTGACCTTCCATTCACCTTCGCCATAAACCTTGAGGCCAGTGGCATCAATGGCCAGATGTTGTATTGCTCCTCTGGTTTTGGTTTTAAATGAAACTTCAACTTCCTTAGCTCGGCGGCTTATACAGGTGTAGTGCGGGCAAACAAGCGGGATGTTAGCCAGCTTAAATACGGAGTCTAGAAAACCTTGCAGCGCTCTCAAGGGCATAGAGAAAACGCGTTTCACCATCAGTGCGGTAGTAATGGCTAAGTCGCTGAATCGGCGAGGTCTACCACGCTTGCCTTGTTTGTTTTGCTTCCACTCAGCTATCGCTTCCTCATCAATCCAAAAGGTCAGAGAACCACGGTTGATTAAGGATTTATTGTACTGCTTCCAGTTAGTTGTTTTGTAACGAGGTTTAGGCATGAGGCTACGACGATTGATGGGCGTAGCCGCTCAGATCGTAGTTTCTTGATTTAGTTCCATCGAATTACGCAACAAAGCC	NA	NA	NA	NA
>prophage 3
NZ_CP034305	Vibrio parahaemolyticus strain 20151116002-3 chromosome I, complete sequence	3491101	1982725	1992132	3491101		Vibrio_phage(50.0%)	13	NA	NA
WP_005495404.1|1982725_1983127_-	NinG recombination protein/bacteriophage lambda NinG family protein	NA	A0A2I7S3K0	Vibrio_phage	45.0	3.7e-20
WP_031855938.1|1983116_1983299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025526418.1|1983295_1983946_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	32.8	1.6e-20
WP_031855936.1|1983938_1984319_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085576899.1|1984315_1985269_-	helix-turn-helix domain-containing protein	NA	A0A1V0E831	Vibrio_phage	35.7	2.9e-39
WP_005495414.1|1985334_1985553_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025526421.1|1985549_1986014_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	48.8	1.4e-18
WP_021486590.1|1986033_1986255_-	helix-turn-helix transcriptional regulator	NA	A0A1P8DTF8	Proteus_phage	40.6	2.8e-06
WP_024702645.1|1986363_1987032_+	helix-turn-helix domain-containing protein	NA	A0A1V0E8B5	Vibrio_phage	57.1	1.1e-66
WP_127463331.1|1987742_1987922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085576900.1|1987934_1991099_+	hypothetical protein	NA	I3PUZ3	Vibrio_phage	33.6	8.7e-24
WP_031855931.1|1991091_1991619_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005495429.1|1991943_1992132_+	hypothetical protein	NA	F6LQB8	Bdellovibrio_phage	54.7	2.3e-09
>prophage 4
NZ_CP034305	Vibrio parahaemolyticus strain 20151116002-3 chromosome I, complete sequence	3491101	2722072	2728774	3491101		Staphylococcus_phage(50.0%)	7	NA	NA
WP_005440184.1|2722072_2722543_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.3	1.7e-32
WP_005496254.1|2722712_2723822_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	1.5e-63
WP_005483039.1|2723991_2724645_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	37.5	1.6e-33
WP_025625922.1|2724657_2725782_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.0	4.0e-48
WP_005482986.1|2725789_2726239_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_031855514.1|2726366_2727617_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.7	2.8e-98
WP_005483011.1|2727634_2728774_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.7	1.3e-62
>prophage 1
NZ_CP034306	Vibrio parahaemolyticus strain 20151116002-3 chromosome II, complete sequence	1886547	1802759	1879223	1886547	integrase,transposase	Vibrio_phage(57.14%)	38	1802681:1802740	1836129:1837184
1802681:1802740	attL	GGCTTTGTTGCGTAATTCGATGGAACTAAATCAAGAAACTACGATCTGAGCGGCTACGCC	NA	NA	NA	NA
WP_010446562.1|1802759_1803680_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_085577217.1|1806024_1808139_+	collagenase	NA	NA	NA	NA	NA
WP_078580770.1|1808307_1809054_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_021452744.1|1809571_1810807_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1V0E8G8	Vibrio_phage	40.1	2.2e-79
WP_031856433.1|1810877_1813223_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021452742.1|1813188_1813878_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021452741.1|1813870_1815127_-	DUF4297 domain-containing protein	NA	NA	NA	NA	NA
WP_077673064.1|1815489_1817019_+	dGTPase	NA	NA	NA	NA	NA
WP_031856435.1|1817114_1818452_-	DNA-processing protein DprA	NA	NA	NA	NA	NA
WP_024702883.1|1818451_1820581_-	RecQ family ATP-dependent DNA helicase	NA	F2NZ48	Diadromus_pulchellus_ascovirus	30.3	3.0e-36
WP_024702880.1|1822035_1823211_-	YibE/F family protein	NA	NA	NA	NA	NA
WP_024702879.1|1823302_1825498_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_025522392.1|1825803_1827033_-	ROK family transcriptional regulator	NA	NA	NA	NA	NA
WP_031855223.1|1827172_1828075_+	aldose 1-epimerase	NA	NA	NA	NA	NA
WP_149150288.1|1828150_1829578_-	sugar porter family MFS transporter	NA	NA	NA	NA	NA
WP_077673103.1|1829657_1832972_-	DUF5107 domain-containing protein	NA	NA	NA	NA	NA
WP_078232775.1|1833331_1833616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085576847.1|1834072_1834987_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010446562.1|1835188_1836109_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_158090027.1|1840235_1840889_-	EAL domain-containing protein	NA	NA	NA	NA	NA
1836129:1837184	attR	GGCGTAGCCGCTCAGATCGTAGTTTCTTGATTTAGTTCCATCGAATTACGCAACAAAGCCTTGTAACAGTGTAATATTGTTGAATATGAACAGTATATTTCCTGACGAATTTTCACCACTAATTGTAGTACAACGTAAACTGAGCTATTGTCAAATGTGGTGTATGGAAGATCATGCTGTAGCCTGTTGATGAGCCTCCATTTCTTTCACTCCATCGATGTAATCTGCACCACTAGTTTTGGACACATCGTTATGTGAGTACAATCACTAACGAGGTGAACCATGACAAACAAAAAGAAACGTATTATCCATTCTCCTGAATTTAAAGCCGAAACCCTGAAGCTAGCAGAGAAAGTGGGAGTAGTTGCGGCAGCAAGACAGCTCTCGTTACACGAATCTCAGATCTAAGGTTGACGTAAGGCAGCTAAGAATGACACCAGTACCAGTCAGCGGGAAAAAGATCTAGCCGCCGAAGTGGCCAAGCTCAAACGGCAATTGGCTGAGCAAGCTGAAGAGCAAGATATCGTAAAGAAATGTATGGTCTGCTCCGTTTTTGCAAGTAAAAGCTCACTGTCAGAATACGTTTGCGTCAATGTATCCGGCCTGTTTGTGAACCATCTAGTGTTCTGGCCTTGATGGGATCCGCACGTTGTTGTCCTAATAAAGCGCTCAGTCATAAAAAACTACTTTTTTTAGCCAAGCTTCAACATCGTGGTTTAACGCTTCGGTCATCAGCTTGTTTCTCGCAAAATCTATGGAAAAGATAGTTTGTTGTATGTTATTTCACCGCCAAAACTGGATAAAAATGATACTCCTGCCTCGAGGTTAATACCTTCCAACAAATCCTCATTATCTTGTTAGCCAAGGCAATTAAAACAATATGGTGATGATGTTTCGTCTCTAACTTGGTTATCCACTAGCTTTAGCCCATTGTATCACCTGACGGTGTAGATAAACGTTACTTTTTTACTTATACCACCAAGGTTGTTTTCTCCGCCTGTGGAGTATCATCTGGGAACCATGCCGACATGTCTCGGCCTCGCTTAAATTGAGTTC	NA	NA	NA	NA
WP_085576904.1|1840912_1841839_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010446562.1|1843624_1844545_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_108744649.1|1846074_1847427_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_031855231.1|1847567_1847858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_146186906.1|1847854_1849138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_108744622.1|1849092_1850163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077672846.1|1850607_1851363_-	outer membrane beta-barrel protein	NA	NA	NA	NA	NA
WP_077672845.1|1851364_1852402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031855233.1|1852404_1853127_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077672844.1|1855872_1856394_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031856402.1|1856490_1857009_-	hypothetical protein	NA	NA	NA	NA	NA
WP_108744621.1|1859702_1862579_-	RHS repeat protein	NA	S5W9C6	Leptospira_phage	29.5	2.8e-05
WP_077672842.1|1862728_1867000_-	virulence protein	NA	NA	NA	NA	NA
WP_159406386.1|1867049_1868087_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159406387.1|1867954_1874686_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050505239.1|1875274_1876840_-	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_085576863.1|1877718_1878558_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031855796.1|1878800_1879223_-|transposase	IS200/IS605 family transposase	transposase	Q331U4	Clostridium_botulinum_C_phage	34.1	7.3e-19
