The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP034289	Vibrio parahaemolyticus strain 20140722001-1 chromosome I, complete sequence	3421899	584837	593395	3421899	tRNA	uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_005455581.1|584837_586478_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	52.4	4.2e-155
WP_140103762.1|586556_587858_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	2.5e-134
WP_005455577.1|588483_588765_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_140103986.1|588766_589471_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	A0A2H4UTB4	Bodo_saltans_virus	23.6	5.9e-05
WP_005380896.1|589488_589965_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_140103985.1|590011_591055_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_005478553.1|591054_591831_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.4	5.0e-66
WP_005455562.1|591830_592457_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	52.1	1.3e-35
WP_005455560.1|592471_593395_+	peptidoglycan DD-metalloendopeptidase family protein	NA	D7RWE0	Brochothrix_phage	35.2	4.1e-06
>prophage 2
NZ_CP034289	Vibrio parahaemolyticus strain 20140722001-1 chromosome I, complete sequence	3421899	616893	627751	3421899	tRNA,transposase	Staphylococcus_phage(33.33%)	8	NA	NA
WP_114867842.1|616893_618070_+|transposase	IS3 family transposase	transposase	Q716C2	Shigella_phage	69.5	1.0e-123
WP_159408078.1|618251_619313_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	26.1	1.4e-05
WP_114867840.1|619309_620521_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_114867839.1|620537_622178_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	41.6	2.2e-103
WP_140104007.1|622709_623192_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	48.7	1.3e-27
WP_005478550.1|623391_624435_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	60.7	8.1e-112
WP_005455548.1|624558_625026_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_140104006.1|625168_627751_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	37.9	7.7e-79
>prophage 3
NZ_CP034289	Vibrio parahaemolyticus strain 20140722001-1 chromosome I, complete sequence	3421899	1675380	1681805	3421899	coat	Vibrio_phage(100.0%)	10	NA	NA
WP_159404115.1|1675380_1676523_-	assembly protein	NA	O88128	Vibrio_phage	99.5	4.8e-214
WP_015975177.1|1676519_1676834_-	DUF2523 domain-containing protein	NA	O88125	Vibrio_phage	100.0	8.0e-47
WP_029811602.1|1676835_1678365_-	methyl-accepting chemotaxis protein	NA	O88107	Vibrio_phage	93.5	1.3e-153
WP_015975175.1|1678496_1678730_-|coat	major coat protein	coat	O88142	Vibrio_phage	100.0	1.0e-30
WP_015975174.1|1678740_1678986_-	hypothetical protein	NA	A0A1W6UH23	Vibrio_phage	100.0	1.2e-37
WP_015975173.1|1678997_1679351_-	DUF1293 domain-containing protein	NA	O88148	Vibrio_phage	100.0	2.9e-61
WP_015975179.1|1679354_1680563_-	DNA replication initiation protein	NA	Q7DKP2	Vibrio_phage	100.0	3.2e-245
WP_005488200.1|1680486_1680702_-	hypothetical protein	NA	A0A1W6UGD1	Vibrio_phage	98.6	1.8e-34
WP_159404116.1|1680698_1681310_-	hypothetical protein	NA	A0A1W6UG66	Vibrio_phage	97.0	2.8e-104
WP_025639340.1|1681436_1681805_+	hypothetical protein	NA	R9TE55	Vibrio_phage	71.1	2.4e-42
>prophage 4
NZ_CP034289	Vibrio parahaemolyticus strain 20140722001-1 chromosome I, complete sequence	3421899	2628689	2635391	3421899		Staphylococcus_phage(50.0%)	7	NA	NA
WP_005440184.1|2628689_2629160_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.3	1.7e-32
WP_005496254.1|2629329_2630439_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	39.6	1.5e-63
WP_005483039.1|2630608_2631262_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	37.5	1.6e-33
WP_140103227.1|2631274_2632399_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	36.0	4.0e-48
WP_005482986.1|2632406_2632856_-	transcriptional regulator NrdR	NA	NA	NA	NA	NA
WP_017448803.1|2632983_2634234_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	47.9	2.1e-98
WP_005483011.1|2634251_2635391_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	41.7	1.3e-62
>prophage 1
NZ_CP034290	Vibrio parahaemolyticus strain 20140722001-1 chromosome II, complete sequence	1872065	715030	754786	1872065		Vibrio_phage(52.63%)	51	NA	NA
WP_069544733.1|715030_716599_-	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	35.7	2.2e-52
WP_140103207.1|716832_717288_+	VOC family protein	NA	NA	NA	NA	NA
WP_159408131.1|718077_718809_-	helix-turn-helix domain-containing protein	NA	A0A2I7S9A5	Vibrio_phage	72.9	1.4e-105
WP_130360778.1|718983_719208_+	transcriptional regulator	NA	A0A2I7S995	Vibrio_phage	83.8	1.6e-28
WP_159408132.1|719213_721211_+	DDE endonuclease	NA	A0A2I7S9A8	Vibrio_phage	78.1	5.2e-309
WP_159408133.1|721235_721544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031855439.1|721568_722513_+	AAA family ATPase	NA	M4M9P4	Vibrio_phage	76.6	6.9e-134
WP_159408134.1|722521_722683_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408135.1|722679_723075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408136.1|723071_723386_+	hypothetical protein	NA	A0A2I7S9B1	Vibrio_phage	44.9	5.4e-19
WP_159408137.1|723399_723603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408138.1|723605_724241_+	DUF3164 family protein	NA	A0A2D1GNM4	Pseudomonas_phage	42.0	1.4e-42
WP_159408139.1|724250_724523_+	hypothetical protein	NA	M1PJ71	Vibrio_phage	65.5	1.4e-26
WP_159408140.1|724515_724734_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_159408141.1|724726_724957_+	hypothetical protein	NA	M1NVN4	Vibrio_phage	69.7	3.0e-19
WP_159408142.1|725116_725797_+	DUF2786 domain-containing protein	NA	A0A2P9JZH4	Alteromonadaceae_phage	39.8	1.7e-30
WP_159408143.1|725793_726321_+	hypothetical protein	NA	F6MIJ5	Haemophilus_phage	42.3	1.7e-25
WP_047110884.1|726505_726739_+	hypothetical protein	NA	M4M9N5	Vibrio_phage	61.0	9.5e-21
WP_159408144.1|726751_727006_+	hypothetical protein	NA	A0A2I7S7Y8	Vibrio_phage	75.0	2.2e-31
WP_159408145.1|727021_727561_+	DUF1018 domain-containing protein	NA	A0A2I7S9B8	Vibrio_phage	56.6	2.1e-50
WP_159408146.1|727553_727895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_047110894.1|727975_728356_+	hypothetical protein	NA	A0A0C4UR27	Shigella_phage	35.2	7.5e-15
WP_047110897.1|728431_728980_+	N-acetylmuramidase	NA	A0A2I7S9B9	Vibrio_phage	71.6	3.3e-72
WP_159408147.1|728979_729252_+	hypothetical protein	NA	A0A2I7S9C2	Vibrio_phage	53.6	6.5e-21
WP_159408148.1|729233_729821_+	hypothetical protein	NA	M4MB79	Vibrio_phage	52.9	1.9e-41
WP_159408149.1|729820_730042_+	TraR/DksA family transcriptional regulator	NA	M4MHG5	Vibrio_phage	61.1	3.2e-18
WP_047110906.1|730041_730341_+	DUF2730 family protein	NA	M4M9P7	Vibrio_phage	67.0	1.6e-28
WP_047110908.1|730349_730640_+	hypothetical protein	NA	A0A2I7S9D8	Vibrio_phage	82.3	9.7e-39
WP_159408150.1|730649_731219_+	DUF3486 family protein	NA	M4MCR3	Vibrio_phage	63.1	3.2e-54
WP_159408151.1|731218_732856_+	hypothetical protein	NA	A0A0C4UR29	Shigella_phage	68.2	1.1e-214
WP_159408152.1|732859_734437_+	DUF935 family protein	NA	C9DGN6	Escherichia_phage	48.1	7.4e-125
WP_159408153.1|734436_735840_+	F protein	NA	A0A2H4IYU7	uncultured_Caudovirales_phage	52.2	7.7e-65
WP_047110921.1|736038_736236_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408154.1|736235_736697_+	phage virion morphogenesis protein	NA	A0A1B0T6E8	Thiobacimonas_phage	30.2	3.8e-13
WP_159408155.1|736942_738091_+	hypothetical protein	NA	A0A0C4UQU6	Shigella_phage	45.5	3.3e-74
WP_159408156.1|738097_738487_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408157.1|738527_739421_+	hypothetical protein	NA	J9SVY7	Pseudomonas_phage	46.8	1.4e-75
WP_159408158.1|739497_739902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_031855464.1|739904_740333_+	DUF1320 domain-containing protein	NA	A0A0C4UR02	Shigella_phage	36.9	1.7e-15
WP_031855465.1|740329_740767_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085576871.1|740756_741665_+	hypothetical protein	NA	G8EY04	Synechococcus_phage	35.6	5.9e-34
WP_047110941.1|741733_742060_+	hypothetical protein	NA	G8EY05	Synechococcus_phage	33.0	1.4e-06
WP_047110944.1|742080_742398_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408159.1|742381_745219_+	tape measure protein	NA	A0A1P8DTP6	Salmonella_phage	21.2	3.5e-08
WP_047110949.1|745218_745827_+	hypothetical protein	NA	W6ATC3	Vibrio_phage	24.8	6.8e-10
WP_031855470.1|745835_746429_+	hypothetical protein	NA	A0A2L0V147	Salmonella_phage	28.1	2.8e-16
WP_102586064.1|746429_746843_+	hypothetical protein	NA	A0A2L0V149	Salmonella_phage	37.4	2.0e-13
WP_159408160.1|746842_751744_+	hypothetical protein	NA	A0A0A0RPB1	Escherichia_phage	32.2	2.9e-82
WP_159408161.1|751781_753179_+	hypothetical protein	NA	Q8H9N0	Vibrio_phage	39.0	1.3e-51
WP_159408162.1|753554_753845_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159408163.1|753877_754786_+	hypothetical protein	NA	A0A1V0E894	Vibrio_phage	55.5	1.2e-79
>prophage 2
NZ_CP034290	Vibrio parahaemolyticus strain 20140722001-1 chromosome II, complete sequence	1872065	1304129	1311969	1872065		Vibrio_phage(100.0%)	12	NA	NA
WP_074190126.1|1304129_1304486_-	hypothetical protein	NA	Q9MCC3	Vibrio_phage	71.9	2.7e-43
WP_029851168.1|1304620_1304845_+	hypothetical protein	NA	G8IRU4	Vibrio_phage	56.1	9.2e-13
WP_029803951.1|1304837_1306094_+	replication protein	NA	G8IRU5	Vibrio_phage	62.0	5.0e-148
WP_159408168.1|1306099_1306426_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005376279.1|1306422_1306668_+	hypothetical protein	NA	R9TMT7	Vibrio_phage	43.9	4.8e-07
WP_025441871.1|1306696_1306915_+	hypothetical protein	NA	R9TRU5	Vibrio_phage	53.1	1.2e-06
WP_159408169.1|1307048_1308518_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_025788705.1|1308517_1308850_+	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_159408170.1|1308853_1310278_+	toxin	NA	Q64EV0	Vibrio_phage	51.7	4.8e-123
WP_140167849.1|1310902_1311367_-	hypothetical protein	NA	A0A1W6UFZ4	Vibrio_phage	45.1	1.2e-33
WP_029851182.1|1311398_1311773_-	phage protein	NA	A0A1W6UG37	Vibrio_phage	94.4	1.6e-62
WP_159408181.1|1311729_1311969_-	hypothetical protein	NA	A0A1W6UFY8	Vibrio_phage	73.4	2.0e-26
>prophage 1
NZ_CP034292	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-2, complete sequence	92429	40879	49574	92429		Vibrio_phage(88.89%)	12	NA	NA
WP_159408253.1|40879_41503_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	29.6	7.0e-10
WP_159408212.1|41870_42239_-	hypothetical protein	NA	A0A1W6UGD7	Vibrio_phage	65.3	7.5e-36
WP_005376287.1|42424_42649_+	hypothetical protein	NA	G8IRU4	Vibrio_phage	56.1	9.2e-13
WP_029792115.1|42641_43898_+	replication protein	NA	G8IRU5	Vibrio_phage	61.3	3.0e-145
WP_025441869.1|43903_44230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_005376279.1|44226_44472_+	hypothetical protein	NA	R9TMT7	Vibrio_phage	43.9	4.8e-07
WP_029849360.1|44500_44719_+	hypothetical protein	NA	R9TRU5	Vibrio_phage	51.6	2.1e-06
WP_140167847.1|44852_46319_+	chemotaxis protein	NA	NA	NA	NA	NA
WP_025788705.1|46318_46651_+	DUF2523 domain-containing protein	NA	NA	NA	NA	NA
WP_140167848.1|46654_48079_+	toxin	NA	Q64EV0	Vibrio_phage	51.7	4.8e-123
WP_140167849.1|48703_49168_-	hypothetical protein	NA	A0A1W6UFZ4	Vibrio_phage	45.1	1.2e-33
WP_029851182.1|49199_49574_-	phage protein	NA	A0A1W6UG37	Vibrio_phage	94.4	1.6e-62
>prophage 1
NZ_CP034293	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-3, complete sequence	71294	10514	54444	71294	transposase,protease	Vibrio_phage(66.67%)	43	NA	NA
WP_025791776.1|10514_11552_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_025791777.1|11661_12078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032072621.1|12093_13059_-	type II secretion system protein	NA	NA	NA	NA	NA
WP_024700480.1|13055_13583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_029787212.1|13582_14110_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025789750.1|14180_15185_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025791778.1|15181_16804_-	Flp pilus assembly complex ATPase component	NA	NA	NA	NA	NA
WP_025789137.1|16800_17439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025789136.1|17435_18566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025789135.1|18565_20053_-	type II and III secretion system protein	NA	NA	NA	NA	NA
WP_025789134.1|20067_20925_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025789133.1|20941_22198_-	TrbI/VirB10 family protein	NA	NA	NA	NA	NA
WP_024700471.1|22190_22613_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025789132.1|22612_23485_-	P-type conjugative transfer protein TrbG	NA	NA	NA	NA	NA
WP_025789131.1|23493_24168_-	type IV secretion system protein	NA	NA	NA	NA	NA
WP_025789130.1|24197_25505_-	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_025791779.1|25501_26449_-	P-type conjugative transfer ATPase TrbB	NA	NA	NA	NA	NA
WP_025789747.1|26459_27218_-	P-type conjugative transfer protein TrbJ	NA	NA	NA	NA	NA
WP_025789746.1|27214_29629_-	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_017449280.1|29669_29984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017449279.1|29994_30324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032072624.1|30374_30527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023624635.1|31792_32632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023624634.1|34867_35812_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.6	1.7e-71
WP_031419872.1|36125_36791_+	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	39.9	3.9e-35
WP_025788937.1|36774_37095_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023624629.1|37829_38816_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023624628.1|38869_39544_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023624627.1|39960_40785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025788935.1|41173_43507_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_023624625.1|43481_44147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025788934.1|44127_45357_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158090022.1|45745_45901_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010446562.1|46496_47417_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_114868443.1|47517_47970_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010446562.1|47954_48875_-|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_023622796.1|49103_49583_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025789543.1|49618_50935_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023622799.1|50947_51283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032072633.1|51421_51577_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025789542.1|51576_52053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010446562.1|52177_53098_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
WP_010446562.1|53523_54444_+|transposase	IS5 family transposase	transposase	A0A1V0E8E1	Vibrio_phage	98.7	4.6e-175
