assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	1	472085-473762	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTATATTAACTAAGTGGTATGTAAA,GTTTTATATTAACTAAGTGGTATGTAAAG,GTTTTATATTAACTAAGTGGTATGTAAAG	28,29,29	0	0	NA	NA	I-A:I-A:I-A	25,25,25	25	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|51aa|up_0|NZ_CP029566.1_471279_471432_+,NA|52aa|down_1|NZ_CP029566.1_474944_475100_+,NA|34aa|down_2|NZ_CP029566.1_475124_475226_+,NA|84aa|down_3|NZ_CP029566.1_475345_475597_+,NA|38aa|down_4|NZ_CP029566.1_475917_476031_+,NA|128aa|down_5|NZ_CP029566.1_476817_477201_-,NA|115aa|down_6|NZ_CP029566.1_477327_477672_+,NA|70aa|down_7|NZ_CP029566.1_477854_478064_+,NA|33aa|down_8|NZ_CP029566.1_478896_478995_-,NA|106aa|down_9|NZ_CP029566.1_479055_479373_-	NA|271aa|up_9|NZ_CP029566.1_459195_460008_+	cd09009, PNP-EcPNPII_like, purine nucleoside phosphorylases similar to human PNP and Escherichia coli PNP-II (XapA)	NA|447aa|up_8|NZ_CP029566.1_460196_461537_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|360aa|up_7|NZ_CP029566.1_461749_462829_+	pfam02618, YceG, YceG-like family	NA|225aa|up_6|NZ_CP029566.1_463000_463675_+	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]	NA|416aa|up_5|NZ_CP029566.1_463661_464909_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|555aa|up_4|NZ_CP029566.1_464980_466645_+	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane]	NA|506aa|up_3|NZ_CP029566.1_467048_468566_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|274aa|up_2|NZ_CP029566.1_468690_469512_-	sd00006, TPR, Tetratricopeptide repeat	NA|476aa|up_1|NZ_CP029566.1_469702_471130_+	NF033435, S-layer_Clost, S-layer protein SlpA	NA|51aa|up_0|NZ_CP029566.1_471279_471432_+	NA	NA|75aa|down_0|NZ_CP029566.1_474048_474273_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|52aa|down_1|NZ_CP029566.1_474944_475100_+	NA	NA|34aa|down_2|NZ_CP029566.1_475124_475226_+	NA	NA|84aa|down_3|NZ_CP029566.1_475345_475597_+	NA	NA|38aa|down_4|NZ_CP029566.1_475917_476031_+	NA	NA|128aa|down_5|NZ_CP029566.1_476817_477201_-	NA	NA|115aa|down_6|NZ_CP029566.1_477327_477672_+	NA	NA|70aa|down_7|NZ_CP029566.1_477854_478064_+	NA	NA|33aa|down_8|NZ_CP029566.1_478896_478995_-	NA	NA|106aa|down_9|NZ_CP029566.1_479055_479373_-	NA
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	2	685619-686569	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	DinG	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Type IV-A	GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT,GTTTTATATTAACTAAGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	13,14,13	14	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|183aa|up_5|NZ_CP029566.1_678607_679156_-,NA|82aa|up_1|NZ_CP029566.1_684114_684360_-,NA|35aa|up_0|NZ_CP029566.1_684984_685089_+,NA|80aa|down_4|NZ_CP029566.1_693715_693955_+,NA|59aa|down_5|NZ_CP029566.1_694125_694302_-,NA|45aa|down_9|NZ_CP029566.1_696928_697063_+	NA|195aa|up_9|NZ_CP029566.1_673808_674393_-	pfam00882, Zn_dep_PLPC, Zinc dependent phospholipase C	NA|477aa|up_8|NZ_CP029566.1_674592_676023_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|315aa|up_7|NZ_CP029566.1_676338_677283_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|312aa|up_6|NZ_CP029566.1_677553_678489_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|183aa|up_5|NZ_CP029566.1_678607_679156_-	NA	NA|143aa|up_4|NZ_CP029566.1_679307_679736_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|223aa|up_3|NZ_CP029566.1_679802_680471_+	cd01994, Alpha_ANH_like_IV, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	NA|452aa|up_2|NZ_CP029566.1_680588_681944_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|82aa|up_1|NZ_CP029566.1_684114_684360_-	NA	NA|35aa|up_0|NZ_CP029566.1_684984_685089_+	NA	NA|578aa|down_0|NZ_CP029566.1_686894_688628_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|282aa|down_1|NZ_CP029566.1_688867_689713_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|745aa|down_2|NZ_CP029566.1_689743_691978_-	cd01948, EAL, EAL domain	NA|270aa|down_3|NZ_CP029566.1_692761_693571_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|80aa|down_4|NZ_CP029566.1_693715_693955_+	NA	NA|59aa|down_5|NZ_CP029566.1_694125_694302_-	NA	NA|225aa|down_6|NZ_CP029566.1_694806_695481_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|185aa|down_7|NZ_CP029566.1_695700_696255_-	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases	NA|122aa|down_8|NZ_CP029566.1_696332_696698_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|45aa|down_9|NZ_CP029566.1_696928_697063_+	NA
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	3	796830-797391	3,3	CRISPRCasFinder,CRT	no	cas14j	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATATGGAATGTAAAT	29,29	0	0	NA	NA	I-A:I-A	8,8	8	TypeV	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|50aa|up_9|NZ_CP029566.1_785656_785806_+,NA|190aa|up_7|NZ_CP029566.1_786720_787290_+,NA|61aa|up_4|NZ_CP029566.1_790239_790422_-,NA|91aa|down_0|NZ_CP029566.1_797558_797831_-,NA|323aa|down_5|NZ_CP029566.1_802312_803281_+	NA|50aa|up_9|NZ_CP029566.1_785656_785806_+	NA	NA|300aa|up_8|NZ_CP029566.1_785816_786716_+	TIGR02163, Ferredoxin-type_protein_NapH_homolog, ferredoxin-type protein, NapH/MauN family	NA|190aa|up_7|NZ_CP029566.1_786720_787290_+	NA	NA|216aa|up_6|NZ_CP029566.1_787456_788104_-	pfam02589, LUD_dom, LUD domain	NA|305aa|up_5|NZ_CP029566.1_788493_789408_-	pfam11155, DUF2935, Domain of unknown function (DUF2935)	NA|61aa|up_4|NZ_CP029566.1_790239_790422_-	NA	NA|283aa|up_3|NZ_CP029566.1_790832_791681_-	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|276aa|up_2|NZ_CP029566.1_791699_792527_-	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|308aa|up_1|NZ_CP029566.1_792501_793425_-	pfam10728, DUF2520, Domain of unknown function (DUF2520)	NA|698aa|up_0|NZ_CP029566.1_794077_796171_+	cd01948, EAL, EAL domain	NA|91aa|down_0|NZ_CP029566.1_797558_797831_-	NA	NA|273aa|down_1|NZ_CP029566.1_798049_798868_+	cd04782, HTH_BltR, Helix-Turn-Helix DNA binding domain of the BltR transcription regulator	NA|707aa|down_2|NZ_CP029566.1_799000_801121_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]	NA|76aa|down_3|NZ_CP029566.1_801146_801374_-	pfam04023, FeoA, FeoA domain	NA|147aa|down_4|NZ_CP029566.1_801699_802140_-	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|323aa|down_5|NZ_CP029566.1_802312_803281_+	NA	NA|403aa|down_6|NZ_CP029566.1_803757_804966_+	PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional	NA|294aa|down_7|NZ_CP029566.1_805026_805908_-	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins	NA|305aa|down_8|NZ_CP029566.1_806323_807238_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|182aa|down_9|NZ_CP029566.1_807460_808006_+	cd01046, Rubrerythrin_like, rubrerythrin-like, diiron-binding domain
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	4	858028-858115	4	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TAAATACCACATAGTTAATATAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|52aa|down_0|NZ_CP029566.1_858407_858563_+,NA|62aa|down_2|NZ_CP029566.1_859095_859281_+,NA|85aa|down_4|NZ_CP029566.1_860548_860803_+,NA|81aa|down_6|NZ_CP029566.1_861542_861785_+,NA|94aa|down_7|NZ_CP029566.1_861863_862145_+	NA|290aa|up_9|NZ_CP029566.1_847660_848530_+	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|252aa|up_8|NZ_CP029566.1_848572_849328_+	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|274aa|up_7|NZ_CP029566.1_849369_850191_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|254aa|up_6|NZ_CP029566.1_850195_850957_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|80aa|up_5|NZ_CP029566.1_851487_851727_+	pfam13710, ACT_5, ACT domain	NA|332aa|up_4|NZ_CP029566.1_852030_853026_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|565aa|up_3|NZ_CP029566.1_853072_854767_+	TIGR00118, Probable_acetolactate_synthase_large_subunit, acetolactate synthase, large subunit, biosynthetic type	NA|377aa|up_2|NZ_CP029566.1_855127_856258_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|169aa|up_1|NZ_CP029566.1_856497_857004_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|114aa|up_0|NZ_CP029566.1_857079_857421_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|52aa|down_0|NZ_CP029566.1_858407_858563_+	NA	NA|124aa|down_1|NZ_CP029566.1_858583_858955_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|62aa|down_2|NZ_CP029566.1_859095_859281_+	NA	NA|251aa|down_3|NZ_CP029566.1_859400_860153_+	COG3617, COG3617, Prophage antirepressor [Transcription]	NA|85aa|down_4|NZ_CP029566.1_860548_860803_+	NA	NA|131aa|down_5|NZ_CP029566.1_860853_861246_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|81aa|down_6|NZ_CP029566.1_861542_861785_+	NA	NA|94aa|down_7|NZ_CP029566.1_861863_862145_+	NA	NA|213aa|down_8|NZ_CP029566.1_862131_862770_+	pfam04404, ERF, ERF superfamily	NA|297aa|down_9|NZ_CP029566.1_862788_863679_+	pfam13730, HTH_36, Helix-turn-helix domain
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	5	886530-887567	3,5,4,4,5	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTAGATTAACTATATGGAATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAATTAA	29,29,29,29,32	0	0	NA	NA	I-A:I-A:I-A:I-A:I-A	11,15,15,11,11	15	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|116aa|up_9|NZ_CP029566.1_880471_880819_+,NA|269aa|up_7|NZ_CP029566.1_881218_882025_+,NA|146aa|up_6|NZ_CP029566.1_882373_882811_+,NA|59aa|up_5|NZ_CP029566.1_882803_882980_+,NA|54aa|up_0|NZ_CP029566.1_885630_885792_+,NA	NA|116aa|up_9|NZ_CP029566.1_880471_880819_+	NA	NA|97aa|up_8|NZ_CP029566.1_880818_881109_+	pfam04883, HK97-gp10_like, Bacteriophage HK97-gp10, putative tail-component	NA|269aa|up_7|NZ_CP029566.1_881218_882025_+	NA	NA|146aa|up_6|NZ_CP029566.1_882373_882811_+	NA	NA|59aa|up_5|NZ_CP029566.1_882803_882980_+	NA	NA|437aa|up_4|NZ_CP029566.1_882980_884291_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_3|NZ_CP029566.1_884307_884778_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_2|NZ_CP029566.1_884849_885290_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_1|NZ_CP029566.1_885289_885484_+	TIGR02247, Hypothetical_protein_K09H11	NA|54aa|up_0|NZ_CP029566.1_885630_885792_+	NA	NA|57aa|down_0|NZ_CP029566.1_887726_887897_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|252aa|down_1|NZ_CP029566.1_888111_888867_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|257aa|down_2|NZ_CP029566.1_889633_890404_+	pfam09851, SHOCT, Short C-terminal domain	NA|784aa|down_3|NZ_CP029566.1_890461_892813_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_4|NZ_CP029566.1_892829_893525_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_5|NZ_CP029566.1_893517_895410_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_6|NZ_CP029566.1_895423_895684_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_7|NZ_CP029566.1_895688_896108_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_8|NZ_CP029566.1_896108_897158_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_9|NZ_CP029566.1_897150_897768_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	6	889154-889509	6,6	CRISPRCasFinder,PILER-CR	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTTATATTAACTAAGTGGTATGTAAA,TTTTATATTAACTAAGTGGTATGTAAAG	27,28	0	0	NA	NA	I-A:I-A	5,2	5	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|269aa|up_9|NZ_CP029566.1_881218_882025_+,NA|146aa|up_8|NZ_CP029566.1_882373_882811_+,NA|59aa|up_7|NZ_CP029566.1_882803_882980_+,NA|54aa|up_2|NZ_CP029566.1_885630_885792_+,NA|514aa|down_9|NZ_CP029566.1_898821_900363_+	NA|269aa|up_9|NZ_CP029566.1_881218_882025_+	NA	NA|146aa|up_8|NZ_CP029566.1_882373_882811_+	NA	NA|59aa|up_7|NZ_CP029566.1_882803_882980_+	NA	NA|437aa|up_6|NZ_CP029566.1_882980_884291_+	pfam04984, Phage_sheath_1, Phage tail sheath protein subtilisin-like domain	NA|157aa|up_5|NZ_CP029566.1_884307_884778_+	pfam09393, DUF2001, Phage tail tube protein	NA|147aa|up_4|NZ_CP029566.1_884849_885290_+	pfam08890, Phage_TAC_5, Phage XkdN-like tail assembly chaperone protein, TAC	NA|65aa|up_3|NZ_CP029566.1_885289_885484_+	TIGR02247, Hypothetical_protein_K09H11	NA|54aa|up_2|NZ_CP029566.1_885630_885792_+	NA	NA|57aa|up_1|NZ_CP029566.1_887726_887897_+	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family	NA|252aa|up_0|NZ_CP029566.1_888111_888867_+	smart01040, Bro-N, BRO family, N-terminal domain	NA|257aa|down_0|NZ_CP029566.1_889633_890404_+	pfam09851, SHOCT, Short C-terminal domain	NA|784aa|down_1|NZ_CP029566.1_890461_892813_+	TIGR02675, Mu-like_prophage_FluMu_protein_gp42, tape measure domain	NA|232aa|down_2|NZ_CP029566.1_892829_893525_+	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|631aa|down_3|NZ_CP029566.1_893517_895410_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|87aa|down_4|NZ_CP029566.1_895423_895684_+	pfam10844, DUF2577, Protein of unknown function (DUF2577)	NA|140aa|down_5|NZ_CP029566.1_895688_896108_+	pfam10934, DUF2634, Protein of unknown function (DUF2634)	NA|350aa|down_6|NZ_CP029566.1_896108_897158_+	pfam04865, Baseplate_J, Baseplate J-like protein	NA|206aa|down_7|NZ_CP029566.1_897150_897768_+	pfam10076, DUF2313, Uncharacterized protein conserved in bacteria (DUF2313)	NA|342aa|down_8|NZ_CP029566.1_897779_898805_+	pfam12571, DUF3751, Phage tail-collar fibre protein	NA|514aa|down_9|NZ_CP029566.1_898821_900363_+	NA
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	7	1029624-1029913	7,7,5	PILER-CR,CRISPRCasFinder,CRT	no	cas14j	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT,GTTTTATATTAACTATGTGGTATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	TypeV	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|45aa|up_4|NZ_CP029566.1_1024509_1024644_-,NA|80aa|up_0|NZ_CP029566.1_1029188_1029428_+,NA|96aa|down_0|NZ_CP029566.1_1030321_1030609_+,NA|59aa|down_5|NZ_CP029566.1_1036998_1037175_-,NA|341aa|down_6|NZ_CP029566.1_1037749_1038772_+,NA|258aa|down_8|NZ_CP029566.1_1039678_1040452_+	NA|172aa|up_9|NZ_CP029566.1_1015562_1016078_+	pfam13787, HXXEE, Protein of unknown function with HXXEE motif	NA|825aa|up_8|NZ_CP029566.1_1016883_1019358_+	PRK00451, PRK00451, aminomethyl-transferring glycine dehydrogenase subunit GcvPA	NA|486aa|up_7|NZ_CP029566.1_1019357_1020815_+	PRK04366, PRK04366, aminomethyl-transferring glycine dehydrogenase subunit GcvPB	NA|786aa|up_6|NZ_CP029566.1_1021237_1023595_+	cd02609, P-type_ATPase, uncharacterized subfamily of P-type ATPase transporter, similar to uncharacterized Streptococcus pneumoniae exported protein 7, Exp7	NA|106aa|up_5|NZ_CP029566.1_1023680_1023998_-	pfam06865, DUF1255, Protein of unknown function (DUF1255)	NA|45aa|up_4|NZ_CP029566.1_1024509_1024644_-	NA	cas14j|373aa|up_3|NZ_CP029566.1_1025016_1026135_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|up_2|NZ_CP029566.1_1026310_1027066_+	pfam12395, DUF3658, Protein of unknown function	NA|424aa|up_1|NZ_CP029566.1_1027705_1028977_-	cd01303, GDEase, Guanine deaminase (GDEase)	NA|80aa|up_0|NZ_CP029566.1_1029188_1029428_+	NA	NA|96aa|down_0|NZ_CP029566.1_1030321_1030609_+	NA	NA|184aa|down_1|NZ_CP029566.1_1031147_1031699_-	cd02209, cupin_XRE_C, XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain	NA|321aa|down_2|NZ_CP029566.1_1031889_1032852_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|615aa|down_3|NZ_CP029566.1_1033146_1034991_+	cd08579, GDPD_memb_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|195aa|down_4|NZ_CP029566.1_1035312_1035897_+	cd03357, LbH_MAT_GAT, Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates	NA|59aa|down_5|NZ_CP029566.1_1036998_1037175_-	NA	NA|341aa|down_6|NZ_CP029566.1_1037749_1038772_+	NA	NA|296aa|down_7|NZ_CP029566.1_1038785_1039673_+	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component	NA|258aa|down_8|NZ_CP029566.1_1039678_1040452_+	NA	NA|242aa|down_9|NZ_CP029566.1_1040563_1041289_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	8	1394185-1394929	6,8,8	CRT,CRISPRCasFinder,PILER-CR	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATATAAAACN,ATTTACATTCCATATAGTTAATATAAAAC,GTTTTATATTAACTATATGGAATGTAAAT	30,29,29	0	0	NA	NA	I-A:I-A:I-A	11,10,9	11	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|43aa|up_4|NZ_CP029566.1_1392059_1392188_+,NA|58aa|up_1|NZ_CP029566.1_1393459_1393633_+,NA|98aa|up_0|NZ_CP029566.1_1393789_1394083_-,NA|80aa|down_7|NZ_CP029566.1_1403138_1403378_-,NA|216aa|down_8|NZ_CP029566.1_1403548_1404196_-,NA|567aa|down_9|NZ_CP029566.1_1404335_1406036_-	NA|345aa|up_9|NZ_CP029566.1_1386161_1387196_-	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|256aa|up_8|NZ_CP029566.1_1387880_1388648_-	pfam14268, YoaP, YoaP-like	NA|158aa|up_7|NZ_CP029566.1_1388947_1389421_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|186aa|up_6|NZ_CP029566.1_1389789_1390347_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|233aa|up_5|NZ_CP029566.1_1390604_1391303_+	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family	NA|43aa|up_4|NZ_CP029566.1_1392059_1392188_+	NA	NA|156aa|up_3|NZ_CP029566.1_1392325_1392793_+	pfam11188, DUF2975, Protein of unknown function (DUF2975)	NA|72aa|up_2|NZ_CP029566.1_1392803_1393019_+	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|58aa|up_1|NZ_CP029566.1_1393459_1393633_+	NA	NA|98aa|up_0|NZ_CP029566.1_1393789_1394083_-	NA	NA|291aa|down_0|NZ_CP029566.1_1395759_1396632_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|193aa|down_1|NZ_CP029566.1_1397025_1397604_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|239aa|down_2|NZ_CP029566.1_1397661_1398378_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|362aa|down_3|NZ_CP029566.1_1398568_1399654_+	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|220aa|down_4|NZ_CP029566.1_1399808_1400468_-	pfam03154, Atrophin-1, Atrophin-1 family	NA|431aa|down_5|NZ_CP029566.1_1400684_1401977_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|398aa|down_6|NZ_CP029566.1_1401994_1403188_-	PRK06635, PRK06635, aspartate kinase; Reviewed	NA|80aa|down_7|NZ_CP029566.1_1403138_1403378_-	NA	NA|216aa|down_8|NZ_CP029566.1_1403548_1404196_-	NA	NA|567aa|down_9|NZ_CP029566.1_1404335_1406036_-	NA
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	9	1689478-1690556	9,7,9	CRISPRCasFinder,CRT,PILER-CR	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATTTACATTCCATATAGTTAATCTAAAAC,ATTTACATTCCATATAGTTAATCTAAAAC,GTTTTAGATTAACTATATGGAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	16,16,15	16	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|138aa|up_5|NZ_CP029566.1_1685730_1686144_+,NA|106aa|up_4|NZ_CP029566.1_1686740_1687058_+,NA|155aa|up_3|NZ_CP029566.1_1687193_1687658_+,NA|54aa|up_2|NZ_CP029566.1_1687986_1688148_-,NA|132aa|up_1|NZ_CP029566.1_1688199_1688595_-,NA|51aa|down_1|NZ_CP029566.1_1691939_1692092_-,NA|111aa|down_2|NZ_CP029566.1_1692365_1692698_-,NA|85aa|down_3|NZ_CP029566.1_1692724_1692979_-,NA|56aa|down_4|NZ_CP029566.1_1693127_1693295_-,NA|57aa|down_7|NZ_CP029566.1_1696764_1696935_+	NA|690aa|up_9|NZ_CP029566.1_1681359_1683429_-	cd16923, HATPase_VanS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Enterococcus faecium VanS	NA|231aa|up_8|NZ_CP029566.1_1683615_1684308_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|125aa|up_7|NZ_CP029566.1_1684920_1685295_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|78aa|up_6|NZ_CP029566.1_1685513_1685747_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|138aa|up_5|NZ_CP029566.1_1685730_1686144_+	NA	NA|106aa|up_4|NZ_CP029566.1_1686740_1687058_+	NA	NA|155aa|up_3|NZ_CP029566.1_1687193_1687658_+	NA	NA|54aa|up_2|NZ_CP029566.1_1687986_1688148_-	NA	NA|132aa|up_1|NZ_CP029566.1_1688199_1688595_-	NA	NA|122aa|up_0|NZ_CP029566.1_1688648_1689014_-	smart01040, Bro-N, BRO family, N-terminal domain	NA|308aa|down_0|NZ_CP029566.1_1690822_1691746_-	pfam09851, SHOCT, Short C-terminal domain	NA|51aa|down_1|NZ_CP029566.1_1691939_1692092_-	NA	NA|111aa|down_2|NZ_CP029566.1_1692365_1692698_-	NA	NA|85aa|down_3|NZ_CP029566.1_1692724_1692979_-	NA	NA|56aa|down_4|NZ_CP029566.1_1693127_1693295_-	NA	NA|126aa|down_5|NZ_CP029566.1_1694699_1695077_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|165aa|down_6|NZ_CP029566.1_1695881_1696376_+	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G	NA|57aa|down_7|NZ_CP029566.1_1696764_1696935_+	NA	NA|117aa|down_8|NZ_CP029566.1_1697762_1698113_+	pfam12676, DUF3796, Protein of unknown function (DUF3796)	NA|67aa|down_9|NZ_CP029566.1_1698114_1698315_+	COG1476, COG1476, Predicted transcriptional regulators [Transcription]
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	10	1855241-1855398	10	PILER-CR	no	cas3,cas5,cas7,cas6	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	AGGTTTAAGATTAACTAAGTGG------ATTTCA	34	0	0	NA	NA	NA	2	2	Unclear	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|489aa|down_3|NZ_CP029566.1_1859820_1861287_-,NA|39aa|down_9|NZ_CP029566.1_1867362_1867479_-	NA|448aa|up_9|NZ_CP029566.1_1847697_1849041_-	pfam06898, YqfD, Putative stage IV sporulation protein YqfD	NA|81aa|up_8|NZ_CP029566.1_1849053_1849296_-	pfam07873, YabP, YabP family	NA|188aa|up_7|NZ_CP029566.1_1849502_1850066_-	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY,  is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site	NA|166aa|up_6|NZ_CP029566.1_1850258_1850756_-	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family	NA|148aa|up_5|NZ_CP029566.1_1850866_1851310_-	pfam09424, YqeY, Yqey-like protein	NA|60aa|up_4|NZ_CP029566.1_1851339_1851519_-	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|117aa|up_3|NZ_CP029566.1_1851681_1852032_-	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides	NA|433aa|up_2|NZ_CP029566.1_1852074_1853373_-	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]	NA|253aa|up_1|NZ_CP029566.1_1853374_1854133_-	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional	NA|316aa|up_0|NZ_CP029566.1_1854151_1855099_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	cas3|803aa|down_0|NZ_CP029566.1_1855539_1857948_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|266aa|down_1|NZ_CP029566.1_1857974_1858772_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|338aa|down_2|NZ_CP029566.1_1858787_1859801_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	NA|489aa|down_3|NZ_CP029566.1_1859820_1861287_-	NA	cas6|246aa|down_4|NZ_CP029566.1_1861291_1862029_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	NA|370aa|down_5|NZ_CP029566.1_1862286_1863396_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|256aa|down_6|NZ_CP029566.1_1863425_1864193_+	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|458aa|down_7|NZ_CP029566.1_1864380_1865754_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|312aa|down_8|NZ_CP029566.1_1865789_1866725_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|39aa|down_9|NZ_CP029566.1_1867362_1867479_-	NA
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	11	1936692-1936918	8,11	CRT,PILER-CR	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	AATTTACATTCCATATAGTTAATATAAAAC,TTTATATTAACTATATGGAATGTAAAT	30,27	0	0	NA	NA	I-A:NA	3,3	3	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|53aa|down_0|NZ_CP029566.1_1937203_1937362_-	NA|253aa|up_9|NZ_CP029566.1_1925019_1925778_-	COG2169, Ada, Adenosine deaminase [Nucleotide transport and metabolism]	NA|451aa|up_8|NZ_CP029566.1_1925908_1927261_-	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases	NA|517aa|up_7|NZ_CP029566.1_1927357_1928908_-	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component	NA|272aa|up_6|NZ_CP029566.1_1928957_1929773_-	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|161aa|up_5|NZ_CP029566.1_1929793_1930276_-	pfam00358, PTS_EIIA_1, phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1	NA|127aa|up_4|NZ_CP029566.1_1930559_1930940_-	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase	NA|406aa|up_3|NZ_CP029566.1_1931034_1932252_-	PRK08198, PRK08198, threonine dehydratase; Provisional	NA|543aa|up_2|NZ_CP029566.1_1932910_1934539_+	TIGR03801, For_A_Pyridoxal-5-_Phosphate, aspartate 4-decarboxylase	NA|332aa|up_1|NZ_CP029566.1_1934659_1935655_+	cd08964, L-asparaginase_II, Type II (periplasmic) bacterial L-asparaginase	NA|128aa|up_0|NZ_CP029566.1_1935843_1936227_-	pfam03965, Penicillinase_R, Penicillinase repressor	NA|53aa|down_0|NZ_CP029566.1_1937203_1937362_-	NA	NA|457aa|down_1|NZ_CP029566.1_1937720_1939091_-	NF033435, S-layer_Clost, S-layer protein SlpA	NA|208aa|down_2|NZ_CP029566.1_1939404_1940028_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|91aa|down_3|NZ_CP029566.1_1940057_1940330_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|223aa|down_4|NZ_CP029566.1_1940812_1941481_-	pfam04892, VanZ, VanZ like family	NA|807aa|down_5|NZ_CP029566.1_1942335_1944756_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|117aa|down_6|NZ_CP029566.1_1945109_1945460_-	pfam02410, RsfS, Ribosomal silencing factor during starvation	NA|191aa|down_7|NZ_CP029566.1_1945576_1946149_-	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism]	NA|230aa|down_8|NZ_CP029566.1_1946149_1946839_-	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase	NA|213aa|down_9|NZ_CP029566.1_1947114_1947753_+	PRK00117, recX, recombination regulator RecX; Reviewed
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	12	2162291-2162616	10	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTACCATCTATTTGTTGCCATCCTGT	26	0	0	NA	NA	NA	5	5	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|107aa|down_2|NZ_CP029566.1_2165479_2165800_-,NA|664aa|down_3|NZ_CP029566.1_2165789_2167781_-,NA|458aa|down_7|NZ_CP029566.1_2178566_2179940_-	NA|218aa|up_9|NZ_CP029566.1_2147277_2147931_-	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|448aa|up_8|NZ_CP029566.1_2148433_2149777_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|455aa|up_7|NZ_CP029566.1_2149955_2151320_+	cd01298, ATZ_TRZ_like, TRZ/ATZ family contains enzymes from the atrazine degradation pathway and related hydrolases	NA|623aa|up_6|NZ_CP029566.1_2151497_2153366_-	smart00910, HIRAN, The HIRAN protein (HIP116, Rad5p N-terminal) is found in the N-terminal regions of the SWI2/SNF2 proteins typified by HIP116 and Rad5p	NA|406aa|up_5|NZ_CP029566.1_2153598_2154816_-	cd17396, MFS_YdiM_like, Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters	NA|288aa|up_4|NZ_CP029566.1_2155015_2155879_-	PRK12548, PRK12548, shikimate dehydrogenase	NA|641aa|up_3|NZ_CP029566.1_2155960_2157883_-	TIGR03997, NADH:flavin_oxidoreductase, mycofactocin system FadH/OYE family oxidoreductase 2	NA|283aa|up_2|NZ_CP029566.1_2157961_2158810_-	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]	NA|294aa|up_1|NZ_CP029566.1_2159222_2160104_+	cd08434, PBP2_GltC_like, The substrate binding domain of LysR-type transcriptional regulator GltC, which activates gltA expression of glutamate synthase operon, contains type 2 periplasmic binding fold	NA|280aa|up_0|NZ_CP029566.1_2160311_2161151_-	cd01027, TOPRIM_RNase_M5_like, TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea	NA|338aa|down_0|NZ_CP029566.1_2163375_2164389_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|292aa|down_1|NZ_CP029566.1_2164412_2165288_-	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP029566.1_2165479_2165800_-	NA	NA|664aa|down_3|NZ_CP029566.1_2165789_2167781_-	NA	NA|848aa|down_4|NZ_CP029566.1_2167903_2170447_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|226aa|down_5|NZ_CP029566.1_2171190_2171868_+	cd05826, Sortase_B, Sortase domain found in class B sortases	NA|313aa|down_6|NZ_CP029566.1_2177256_2178195_+	cd10948, CE4_BsPdaA_like, Catalytic NodB homology domain of Bacillus subtilis polysaccharide deacetylase PdaA, and its bacterial homologs	NA|458aa|down_7|NZ_CP029566.1_2178566_2179940_-	NA	NA|441aa|down_8|NZ_CP029566.1_2180105_2181428_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|235aa|down_9|NZ_CP029566.1_2181420_2182125_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	13	2217050-2217357	11	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP029566.1_2218650_2219316_+	NA|205aa|up_9|NZ_CP029566.1_2205210_2205825_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP029566.1_2205839_2206289_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP029566.1_2206313_2208521_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP029566.1_2208594_2209107_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP029566.1_2209119_2211570_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP029566.1_2211582_2213247_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP029566.1_2213544_2214042_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP029566.1_2214070_2215450_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP029566.1_2215754_2215901_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP029566.1_2215930_2216509_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP029566.1_2218650_2219316_+	NA	NA|901aa|down_1|NZ_CP029566.1_2219821_2222524_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP029566.1_2222549_2224100_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP029566.1_2224422_2226135_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP029566.1_2226487_2226748_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP029566.1_2226940_2228152_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP029566.1_2228383_2230117_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP029566.1_2230156_2230555_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP029566.1_2230557_2232105_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP029566.1_2232419_2233325_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	14	2217464-2217753	12	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	4	4	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP029566.1_2218650_2219316_+	NA|205aa|up_9|NZ_CP029566.1_2205210_2205825_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP029566.1_2205839_2206289_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP029566.1_2206313_2208521_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP029566.1_2208594_2209107_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP029566.1_2209119_2211570_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP029566.1_2211582_2213247_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP029566.1_2213544_2214042_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP029566.1_2214070_2215450_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP029566.1_2215754_2215901_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP029566.1_2215930_2216509_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP029566.1_2218650_2219316_+	NA	NA|901aa|down_1|NZ_CP029566.1_2219821_2222524_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP029566.1_2222549_2224100_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP029566.1_2224422_2226135_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP029566.1_2226487_2226748_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP029566.1_2226940_2228152_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP029566.1_2228383_2230117_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP029566.1_2230156_2230555_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP029566.1_2230557_2232105_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP029566.1_2232419_2233325_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	15	2217956-2218046	13	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TTTCTTTTACAGCTTCTAAACATAT	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|222aa|down_0|NZ_CP029566.1_2218650_2219316_+	NA|205aa|up_9|NZ_CP029566.1_2205210_2205825_-	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|150aa|up_8|NZ_CP029566.1_2205839_2206289_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|736aa|up_7|NZ_CP029566.1_2206313_2208521_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|171aa|up_6|NZ_CP029566.1_2208594_2209107_-	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional	NA|817aa|up_5|NZ_CP029566.1_2209119_2211570_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|555aa|up_4|NZ_CP029566.1_2211582_2213247_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|166aa|up_3|NZ_CP029566.1_2213544_2214042_-	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E	NA|460aa|up_2|NZ_CP029566.1_2214070_2215450_-	TIGR03974, six-Cys-in-45_modification_radical_SAM_protein, SCIFF radical SAM maturase	NA|49aa|up_1|NZ_CP029566.1_2215754_2215901_-	TIGR04223, quorum_AgrD, cyclic lactone autoinducer peptide	NA|193aa|up_0|NZ_CP029566.1_2215930_2216509_-	pfam04647, AgrB, Accessory gene regulator B	NA|222aa|down_0|NZ_CP029566.1_2218650_2219316_+	NA	NA|901aa|down_1|NZ_CP029566.1_2219821_2222524_-	cd01948, EAL, EAL domain	NA|517aa|down_2|NZ_CP029566.1_2222549_2224100_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|571aa|down_3|NZ_CP029566.1_2224422_2226135_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_4|NZ_CP029566.1_2226487_2226748_-	pfam00381, PTS-HPr, PTS HPr component phosphorylation site	NA|404aa|down_5|NZ_CP029566.1_2226940_2228152_-	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli	NA|578aa|down_6|NZ_CP029566.1_2228383_2230117_-	NF033452, BREX_1_MTaseX, BREX-1 system adenine-specific DNA-methyltransferase PglX	NA|133aa|down_7|NZ_CP029566.1_2230156_2230555_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|516aa|down_8|NZ_CP029566.1_2230557_2232105_-	cd01948, EAL, EAL domain	NA|302aa|down_9|NZ_CP029566.1_2232419_2233325_-	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	16	2433096-2433189	14	CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC	29	0	0	NA	NA	I-A	1	1	Unclear	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP029566.1_2425989_2426190_+,NA|260aa|up_1|NZ_CP029566.1_2431372_2432152_+,NA	NA|740aa|up_9|NZ_CP029566.1_2420336_2422556_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP029566.1_2422831_2425486_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP029566.1_2425989_2426190_+	NA	NA|197aa|up_6|NZ_CP029566.1_2426396_2426987_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP029566.1_2426989_2427865_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP029566.1_2427940_2429332_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP029566.1_2429335_2430472_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP029566.1_2430503_2431049_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP029566.1_2431372_2432152_+	NA	NA|143aa|up_0|NZ_CP029566.1_2432606_2433035_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP029566.1_2435662_2435929_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP029566.1_2435931_2436912_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_CP029566.1_2436914_2437433_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP029566.1_2437480_2439802_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP029566.1_2439812_2440514_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP029566.1_2440515_2441430_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP029566.1_2441431_2443309_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP029566.1_2443314_2444052_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP029566.1_2444129_2445047_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP029566.1_2445325_2447242_-	pfam02687, FtsX, FtsX-like permease family
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	17	2433224-2435479	9,12,15	CRT,PILER-CR,CRISPRCasFinder	no	cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6,WYL	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	ATTTACATACCACTTAGTTAATATAAAAC,GTTTTATATTAACTAAGTGGTATGTAAAT,ATTTACATACCACTTAGTTAATATAAAAC	29,29,29	0	0	NA	NA	I-A:I-A:I-A	34,33,33	34	Unclear	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|67aa|up_7|NZ_CP029566.1_2425989_2426190_+,NA|260aa|up_1|NZ_CP029566.1_2431372_2432152_+,NA	NA|740aa|up_9|NZ_CP029566.1_2420336_2422556_-	cd01948, EAL, EAL domain	NA|885aa|up_8|NZ_CP029566.1_2422831_2425486_-	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional	NA|67aa|up_7|NZ_CP029566.1_2425989_2426190_+	NA	NA|197aa|up_6|NZ_CP029566.1_2426396_2426987_-	PRK08305, spoVFB, dipicolinate synthase subunit B; Reviewed	NA|292aa|up_5|NZ_CP029566.1_2426989_2427865_-	PRK08306, PRK08306, dipicolinate synthase subunit DpsA	NA|464aa|up_4|NZ_CP029566.1_2427940_2429332_-	cd17633, AFD_YhfT-like, fatty acid-CoA ligase VraA	NA|379aa|up_3|NZ_CP029566.1_2429335_2430472_-	cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine	NA|182aa|up_2|NZ_CP029566.1_2430503_2431049_-	pfam02632, BioY, BioY family	NA|260aa|up_1|NZ_CP029566.1_2431372_2432152_+	NA	NA|143aa|up_0|NZ_CP029566.1_2432606_2433035_-	PRK10562, PRK10562, putative acetyltransferase; Provisional	cas2|89aa|down_0|NZ_CP029566.1_2435662_2435929_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|327aa|down_1|NZ_CP029566.1_2435931_2436912_-	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP	cas4|173aa|down_2|NZ_CP029566.1_2436914_2437433_-	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas3|774aa|down_3|NZ_CP029566.1_2437480_2439802_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|234aa|down_4|NZ_CP029566.1_2439812_2440514_-	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|305aa|down_5|NZ_CP029566.1_2440515_2441430_-	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas8b2|626aa|down_6|NZ_CP029566.1_2441431_2443309_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas6|246aa|down_7|NZ_CP029566.1_2443314_2444052_-	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6	WYL|306aa|down_8|NZ_CP029566.1_2444129_2445047_-	pfam13280, WYL, WYL domain	NA|639aa|down_9|NZ_CP029566.1_2445325_2447242_-	pfam02687, FtsX, FtsX-like permease family
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	18	3392351-3392429	16	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	TGTTTATAATGTGGATAATATTTAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA|40aa|down_2|NZ_CP029566.1_3406964_3407084_+,NA|226aa|down_5|NZ_CP029566.1_3409264_3409942_+	NA|278aa|up_9|NZ_CP029566.1_3369373_3370207_+	TIGR04520, ECF_ATPase_1, energy-coupling factor transporter ATPase	NA|289aa|up_8|NZ_CP029566.1_3370194_3371061_+	PRK13637, cbiO, energy-coupling factor transporter ATPase	NA|268aa|up_7|NZ_CP029566.1_3371054_3371858_+	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|244aa|up_6|NZ_CP029566.1_3371889_3372621_+	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|144aa|up_5|NZ_CP029566.1_3372740_3373172_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|131aa|up_4|NZ_CP029566.1_3373200_3373593_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|235aa|up_3|NZ_CP029566.1_3374099_3374804_+	TIGR02883, spore_cwlD, N-acetylmuramoyl-L-alanine amidase CwlD	NA|395aa|up_2|NZ_CP029566.1_3387400_3388585_-	PRK05764, PRK05764, aspartate aminotransferase; Provisional	NA|784aa|up_1|NZ_CP029566.1_3388957_3391309_+	PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional	NA|180aa|up_0|NZ_CP029566.1_3391330_3391870_+	TIGR02491, Anaerobic_ribonucleoside-triphosphate_reductase, anaerobic ribonucleoside-triphosphate reductase activating protein	NA|280aa|down_0|NZ_CP029566.1_3404950_3405790_+	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|394aa|down_1|NZ_CP029566.1_3405786_3406968_+	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|40aa|down_2|NZ_CP029566.1_3406964_3407084_+	NA	NA|301aa|down_3|NZ_CP029566.1_3407271_3408174_+	PRK05805, PRK05805, phosphate butyryltransferase; Validated	NA|360aa|down_4|NZ_CP029566.1_3408195_3409275_+	PRK03011, PRK03011, butyrate kinase; Provisional	NA|226aa|down_5|NZ_CP029566.1_3409264_3409942_+	NA	NA|72aa|down_6|NZ_CP029566.1_3409984_3410200_+	COG2221, DsrA, Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]	NA|360aa|down_7|NZ_CP029566.1_3410228_3411308_+	PRK07119, PRK07119, 2-ketoisovalerate ferredoxin reductase; Validated	NA|251aa|down_8|NZ_CP029566.1_3411307_3412060_+	cd03375, TPP_OGFOR, Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor	NA|186aa|down_9|NZ_CP029566.1_3412060_3412618_+	pfam01558, POR, Pyruvate ferredoxin/flavodoxin oxidoreductase
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	19	3814257-3814361	17	CRISPRCasFinder	no	WYL	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Unclear	TATGGATGATGGTGGATAAGAATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA|204aa|up_4|NZ_CP029566.1_3809131_3809743_+,NA|219aa|down_0|NZ_CP029566.1_3814757_3815414_+	NA|147aa|up_9|NZ_CP029566.1_3805099_3805540_+	cd00732, CheW, CheW, a small regulator protein, unique to the chemotaxis signalling in prokaryotes and archea	NA|268aa|up_8|NZ_CP029566.1_3805575_3806379_+	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]	NA|199aa|up_7|NZ_CP029566.1_3806418_3807015_+	cd16432, CheB_Rec, Chemotaxis response regulator protein-glutamate methylesterase, CheB, with N-terminal REC domain	NA|288aa|up_6|NZ_CP029566.1_3807120_3807984_+	pfam13739, DUF4163, Domain of unknown function (DUF4163)	NA|330aa|up_5|NZ_CP029566.1_3808050_3809040_+	PRK08618, PRK08618, ornithine cyclodeaminase family protein	NA|204aa|up_4|NZ_CP029566.1_3809131_3809743_+	NA	NA|260aa|up_3|NZ_CP029566.1_3810203_3810983_+	pfam06161, DUF975, Protein of unknown function (DUF975)	NA|120aa|up_2|NZ_CP029566.1_3811187_3811547_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|461aa|up_1|NZ_CP029566.1_3811557_3812940_+	cd07341, M56_BlaR1_MecR1_like, Peptidase M56-like including those in BlaR1 and MecR1, integral membrane metallopeptidase	NA|137aa|up_0|NZ_CP029566.1_3813155_3813566_+	pfam02181, FH2, Formin Homology 2 Domain	NA|219aa|down_0|NZ_CP029566.1_3814757_3815414_+	NA	NA|424aa|down_1|NZ_CP029566.1_3815880_3817152_-	pfam01471, PG_binding_1, Putative peptidoglycan binding domain	NA|239aa|down_2|NZ_CP029566.1_3817396_3818113_+	pfam13367, PrsW-protease, Protease prsW family	NA|437aa|down_3|NZ_CP029566.1_3818191_3819502_+	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed	NA|179aa|down_4|NZ_CP029566.1_3819601_3820138_+	TIGR02227, Inactive_signal_peptidase_IA	NA|179aa|down_5|NZ_CP029566.1_3820303_3820840_+	TIGR02227, Inactive_signal_peptidase_IA	NA|252aa|down_6|NZ_CP029566.1_3820849_3821605_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|556aa|down_7|NZ_CP029566.1_3821678_3823346_+	cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2	NA|310aa|down_8|NZ_CP029566.1_3824142_3825072_+	TIGR03814, Glutaminase_1, glutaminase A	NA|188aa|down_9|NZ_CP029566.1_3825169_3825733_+	pfam12840, HTH_20, Helix-turn-helix domain
GCF_009867095.1_ASM986709v1	NZ_CP029566	Clostridioides difficile strain CBA7204 chromosome, complete genome	20	3964865-3964973	18	CRISPRCasFinder	no		cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	Orphan	ATCATAATATAATCAGAGTGAAGAAAA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,cas14j,DinG,WYL,csa3,cas14k,cas5,cas7,cas6,cas2,cas1,cas4,cas8b2	NA,NA	NA|848aa|up_9|NZ_CP029566.1_3951041_3953585_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|426aa|up_8|NZ_CP029566.1_3953619_3954897_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|349aa|up_7|NZ_CP029566.1_3954897_3955944_+	TIGR04064, rSAM_nif11, nif11-like peptide radical SAM maturase	NA|413aa|up_6|NZ_CP029566.1_3956007_3957246_+	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only]	NA|348aa|up_5|NZ_CP029566.1_3957326_3958370_+	cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8	NA|244aa|up_4|NZ_CP029566.1_3958455_3959187_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|618aa|up_3|NZ_CP029566.1_3959315_3961169_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|194aa|up_2|NZ_CP029566.1_3961936_3962518_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|50aa|up_1|NZ_CP029566.1_3962517_3962667_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|245aa|up_0|NZ_CP029566.1_3963316_3964051_+	cd07721, yflN-like_MBL-fold, uncharacterized subgroup which includes Bacillus subtilis yflN; MBL-fold metallo hydrolase domain	NA|407aa|down_0|NZ_CP029566.1_3965576_3966797_+	cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins	NA|398aa|down_1|NZ_CP029566.1_3966859_3968053_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|127aa|down_2|NZ_CP029566.1_3968253_3968634_+	pfam03965, Penicillinase_R, Penicillinase repressor	NA|82aa|down_3|NZ_CP029566.1_3968945_3969191_+	pfam11731, Cdd1, Pathogenicity locus	NA|90aa|down_4|NZ_CP029566.1_3969408_3969678_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|246aa|down_5|NZ_CP029566.1_3970555_3971293_-	COG4200, COG4200, Uncharacterized protein conserved in bacteria [Function unknown]	NA|254aa|down_6|NZ_CP029566.1_3971304_3972066_-	pfam12730, ABC2_membrane_4, ABC-2 family transporter protein	NA|305aa|down_7|NZ_CP029566.1_3972065_3972980_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|238aa|down_8|NZ_CP029566.1_3973144_3973858_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|469aa|down_9|NZ_CP029566.1_3973902_3975309_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
