assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	1	1150850-1151244	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP026935.1_1149559_1149700_-,NA	NA|434aa|up_9|NZ_CP026935.1_1140256_1141558_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP026935.1_1141605_1143840_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP026935.1_1143917_1144166_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP026935.1_1144165_1144501_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP026935.1_1144571_1145363_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP026935.1_1145590_1147228_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP026935.1_1147315_1148614_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP026935.1_1148673_1149546_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP026935.1_1149559_1149700_-	NA	NA|224aa|up_0|NZ_CP026935.1_1149838_1150510_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP026935.1_1151882_1153361_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP026935.1_1153387_1154665_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP026935.1_1154983_1155769_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP026935.1_1155838_1157293_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|470aa|down_4|NZ_CP026935.1_1157314_1158724_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP026935.1_1158701_1159481_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|298aa|down_6|NZ_CP026935.1_1159444_1160338_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP026935.1_1160485_1161061_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP026935.1_1161077_1161338_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP026935.1_1161328_1162600_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	2	1169478-1169811	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|298aa|up_9|NZ_CP026935.1_1159444_1160338_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|up_8|NZ_CP026935.1_1160485_1161061_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_7|NZ_CP026935.1_1161077_1161338_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_6|NZ_CP026935.1_1161328_1162600_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_5|NZ_CP026935.1_1162677_1163043_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_4|NZ_CP026935.1_1163358_1165158_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_3|NZ_CP026935.1_1165157_1166870_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_2|NZ_CP026935.1_1166943_1167678_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_1|NZ_CP026935.1_1167942_1168095_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_0|NZ_CP026935.1_1168287_1169400_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|346aa|down_0|NZ_CP026935.1_1169893_1170931_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP026935.1_1171182_1172091_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP026935.1_1172092_1173520_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP026935.1_1173519_1174125_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP026935.1_1174174_1174498_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP026935.1_1174691_1175003_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP026935.1_1175021_1175732_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP026935.1_1175731_1176211_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP026935.1_1176207_1177257_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP026935.1_1177237_1177999_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	3	1711450-1711567	3	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP026935.1_1700735_1700921_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP026935.1_1700933_1701833_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP026935.1_1702025_1703216_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP026935.1_1703212_1704472_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP026935.1_1704461_1706090_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP026935.1_1706362_1707721_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP026935.1_1707725_1708802_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP026935.1_1709264_1709915_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP026935.1_1709968_1710223_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP026935.1_1710222_1711353_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP026935.1_1711586_1713872_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP026935.1_1714567_1718320_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP026935.1_1718447_1719170_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP026935.1_1719316_1721944_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP026935.1_1722092_1723781_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP026935.1_1723777_1724401_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP026935.1_1724544_1728939_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP026935.1_1728939_1730589_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP026935.1_1730593_1731370_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP026935.1_1731443_1732628_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	4	2401928-2402051	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP026935.1_2410947_2411037_+	NA|471aa|up_9|NZ_CP026935.1_2391382_2392795_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP026935.1_2393351_2393561_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP026935.1_2394015_2394642_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP026935.1_2394662_2396765_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|213aa|up_5|NZ_CP026935.1_2396777_2397416_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP026935.1_2397479_2398148_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP026935.1_2398144_2398930_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP026935.1_2398933_2399746_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP026935.1_2399757_2401362_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP026935.1_2401487_2401793_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP026935.1_2402365_2403622_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP026935.1_2403662_2405036_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP026935.1_2405250_2405892_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP026935.1_2405931_2407080_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP026935.1_2407370_2408582_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP026935.1_2408694_2409627_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP026935.1_2409623_2410649_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP026935.1_2410947_2411037_+	NA	NA|390aa|down_8|NZ_CP026935.1_2411202_2412372_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP026935.1_2412606_2413188_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	5	3085028-3085119	5	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA|70aa|up_9|NZ_CP026935.1_3074104_3074314_-,NA	NA|70aa|up_9|NZ_CP026935.1_3074104_3074314_-	NA	NA|1321aa|up_8|NZ_CP026935.1_3074368_3078331_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP026935.1_3078370_3079009_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP026935.1_3079296_3080388_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP026935.1_3080387_3081080_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP026935.1_3081091_3081478_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP026935.1_3081485_3082286_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP026935.1_3082295_3082886_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP026935.1_3082896_3083391_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP026935.1_3083411_3084740_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP026935.1_3085542_3086139_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP026935.1_3086159_3086387_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP026935.1_3086424_3087666_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP026935.1_3087958_3089215_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP026935.1_3089475_3090396_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP026935.1_3090395_3090701_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP026935.1_3090852_3091452_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP026935.1_3091448_3093995_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP026935.1_3093994_3095167_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP026935.1_3095296_3095989_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	6	3387962-3388106	6	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP026935.1_3375860_3376850_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP026935.1_3377246_3378155_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP026935.1_3378346_3380368_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP026935.1_3380946_3381624_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP026935.1_3381616_3382372_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP026935.1_3382358_3383513_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP026935.1_3383509_3384550_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP026935.1_3384636_3385926_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP026935.1_3385984_3386461_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP026935.1_3386612_3387896_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP026935.1_3388129_3390391_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP026935.1_3390573_3392007_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP026935.1_3392082_3393135_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP026935.1_3393318_3394272_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP026935.1_3394312_3395308_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP026935.1_3395462_3396281_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP026935.1_3396281_3397340_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP026935.1_3397342_3398032_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP026935.1_3398031_3398805_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP026935.1_3398971_3399121_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	7	3628433-3628529	7	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|327aa|up_9|NZ_CP026935.1_3618943_3619924_-	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|185aa|up_8|NZ_CP026935.1_3621119_3621674_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP026935.1_3622153_3623020_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP026935.1_3623021_3623234_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP026935.1_3623341_3623863_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP026935.1_3623898_3625284_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP026935.1_3625457_3625952_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP026935.1_3625954_3626677_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP026935.1_3626794_3627304_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP026935.1_3627300_3628368_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP026935.1_3628562_3629456_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP026935.1_3629452_3630268_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP026935.1_3630278_3631538_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP026935.1_3631547_3633215_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP026935.1_3633531_3634581_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP026935.1_3634602_3635838_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP026935.1_3635848_3636634_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|327aa|down_7|NZ_CP026935.1_3636933_3637914_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|382aa|down_8|NZ_CP026935.1_3638061_3639207_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_9|NZ_CP026935.1_3639228_3640530_-	PRK11412, PRK11412, uracil/xanthine transporter
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	8	3807167-3807311	8	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP026935.1_3809356_3809440_-	NA|201aa|up_9|NZ_CP026935.1_3793763_3794366_+	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|147aa|up_8|NZ_CP026935.1_3794337_3794778_-	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK	NA|191aa|up_7|NZ_CP026935.1_3795205_3795778_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|458aa|up_6|NZ_CP026935.1_3796027_3797401_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP026935.1_3797476_3798796_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP026935.1_3799202_3800498_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP026935.1_3800555_3801245_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP026935.1_3801434_3802637_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP026935.1_3802633_3805780_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP026935.1_3805905_3807090_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP026935.1_3807334_3808243_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP026935.1_3808367_3809279_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP026935.1_3809356_3809440_-	NA	NA|95aa|down_3|NZ_CP026935.1_3809925_3810210_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP026935.1_3810281_3810959_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP026935.1_3811216_3811408_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP026935.1_3811457_3811982_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP026935.1_3812164_3812623_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP026935.1_3812742_3813552_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP026935.1_3813568_3814684_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	9	4249657-4249798	9	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|96aa|up_9|NZ_CP026935.1_4238648_4238936_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP026935.1_4238932_4240219_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP026935.1_4240269_4241211_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP026935.1_4241225_4241996_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP026935.1_4242468_4243983_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP026935.1_4244013_4245156_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP026935.1_4245284_4246502_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP026935.1_4246575_4248129_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP026935.1_4248237_4249023_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP026935.1_4249028_4249619_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP026935.1_4249827_4250223_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP026935.1_4250484_4253706_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP026935.1_4253723_4254872_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP026935.1_4255327_4256149_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP026935.1_4256315_4257230_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP026935.1_4257295_4258246_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP026935.1_4258247_4258697_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP026935.1_4258821_4259316_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP026935.1_4259315_4262132_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP026935.1_4262174_4263116_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	10	4525879-4525960	10	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	ATCTACCACCATTAACAGTGGTGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA|123aa|up_6|NZ_CP026935.1_4515417_4515786_-,NA	NA|421aa|up_9|NZ_CP026935.1_4511260_4512523_+	PRK09692, PRK09692, integrase; Provisional	NA|501aa|up_8|NZ_CP026935.1_4512787_4514290_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|243aa|up_7|NZ_CP026935.1_4514471_4515200_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|123aa|up_6|NZ_CP026935.1_4515417_4515786_-	NA	NA|57aa|up_5|NZ_CP026935.1_4516077_4516248_+	PRK09692, PRK09692, integrase; Provisional	NA|327aa|up_4|NZ_CP026935.1_4517936_4518917_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|280aa|up_3|NZ_CP026935.1_4520060_4520900_-	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|359aa|up_2|NZ_CP026935.1_4520958_4522035_-	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|141aa|up_1|NZ_CP026935.1_4523192_4523615_-	pfam00665, rve, Integrase core domain	NA|404aa|up_0|NZ_CP026935.1_4524204_4525416_+	TIGR04414, glycosyltransferase_tibC, autotransporter strand-loop-strand O-heptosyltransferase	NA|538aa|down_0|NZ_CP026935.1_4528758_4530372_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|117aa|down_1|NZ_CP026935.1_4530402_4530753_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|142aa|down_2|NZ_CP026935.1_4530749_4531175_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|513aa|down_3|NZ_CP026935.1_4531345_4532884_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|65aa|down_4|NZ_CP026935.1_4533501_4533696_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|519aa|down_5|NZ_CP026935.1_4533683_4535240_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_6|NZ_CP026935.1_4535259_4535607_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|225aa|down_7|NZ_CP026935.1_4535603_4536278_-	pfam01527, HTH_Tnp_1, Transposase	NA|99aa|down_8|NZ_CP026935.1_4537204_4537501_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|410aa|down_9|NZ_CP026935.1_4539541_4540770_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed
GCF_009867015.1_ASM986701v1	NZ_CP026935	Escherichia coli strain CFS3292 chromosome, complete genome	11	4526152-4526232	11	CRISPRCasFinder	no		cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	Orphan	ATCTACCACCATTAACAGTGGTGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,RT,DEDDh,DinG,c2c9_V-U4	NA|123aa|up_6|NZ_CP026935.1_4515417_4515786_-,NA	NA|421aa|up_9|NZ_CP026935.1_4511260_4512523_+	PRK09692, PRK09692, integrase; Provisional	NA|501aa|up_8|NZ_CP026935.1_4512787_4514290_-	cd16017, LptA, Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase	NA|243aa|up_7|NZ_CP026935.1_4514471_4515200_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|123aa|up_6|NZ_CP026935.1_4515417_4515786_-	NA	NA|57aa|up_5|NZ_CP026935.1_4516077_4516248_+	PRK09692, PRK09692, integrase; Provisional	NA|327aa|up_4|NZ_CP026935.1_4517936_4518917_+	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair]	NA|280aa|up_3|NZ_CP026935.1_4520060_4520900_-	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|359aa|up_2|NZ_CP026935.1_4520958_4522035_-	NF033477, EmaA_autotrans, collagen-binding adhesin autotransporter EmaA	NA|141aa|up_1|NZ_CP026935.1_4523192_4523615_-	pfam00665, rve, Integrase core domain	NA|404aa|up_0|NZ_CP026935.1_4524204_4525416_+	TIGR04414, glycosyltransferase_tibC, autotransporter strand-loop-strand O-heptosyltransferase	NA|538aa|down_0|NZ_CP026935.1_4528758_4530372_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|117aa|down_1|NZ_CP026935.1_4530402_4530753_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|142aa|down_2|NZ_CP026935.1_4530749_4531175_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|513aa|down_3|NZ_CP026935.1_4531345_4532884_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|65aa|down_4|NZ_CP026935.1_4533501_4533696_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|519aa|down_5|NZ_CP026935.1_4533683_4535240_-	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|116aa|down_6|NZ_CP026935.1_4535259_4535607_-	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|225aa|down_7|NZ_CP026935.1_4535603_4536278_-	pfam01527, HTH_Tnp_1, Transposase	NA|99aa|down_8|NZ_CP026935.1_4537204_4537501_+	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|410aa|down_9|NZ_CP026935.1_4539541_4540770_+	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed
