assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009866885.1_ASM986688v1	NZ_CP023861	Listeria monocytogenes EGD-e chromosome, complete genome	1	210311-210462	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,DEDDh	Unclear	CCAATGCTTCTTGGTTTTAATGCTCCTGCTACATCAGAACCGAGCTC	47	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA	NA|231aa|up_9|NZ_CP023861.1_197509_198202_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP023861.1_198198_199407_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP023861.1_200091_200400_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP023861.1_200519_200828_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP023861.1_201214_202588_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP023861.1_202638_203595_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP023861.1_203637_204351_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP023861.1_204621_205575_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP023861.1_205816_207406_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP023861.1_207736_209269_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP023861.1_211422_212292_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP023861.1_212363_212687_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP023861.1_212821_213283_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP023861.1_213333_213666_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP023861.1_213732_214407_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP023861.1_214483_215425_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP023861.1_215718_216342_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP023861.1_216431_217016_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP023861.1_217122_217683_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP023861.1_217797_221337_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_009866885.1_ASM986688v1	NZ_CP023861	Listeria monocytogenes EGD-e chromosome, complete genome	2	544374-544662	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT,GTTTTAGTTACTTATTGTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA|133aa|up_5|NZ_CP023861.1_539363_539762_+,NA|193aa|down_0|NZ_CP023861.1_544921_545500_+	NA|217aa|up_9|NZ_CP023861.1_535426_536077_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP023861.1_536185_538246_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP023861.1_538249_538852_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP023861.1_538879_539347_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP023861.1_539363_539762_+	NA	NA|217aa|up_4|NZ_CP023861.1_539772_540423_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP023861.1_540419_541466_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP023861.1_541481_541775_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP023861.1_541789_543061_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP023861.1_543200_544136_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP023861.1_544921_545500_+	NA	NA|227aa|down_1|NZ_CP023861.1_545607_546288_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP023861.1_546312_546672_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP023861.1_546678_547137_-	pfam12802, MarR_2, MarR family	NA|606aa|down_4|NZ_CP023861.1_547518_549336_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP023861.1_549436_549868_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP023861.1_549914_551345_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP023861.1_551465_552281_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_8|NZ_CP023861.1_552561_552930_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_9|NZ_CP023861.1_553076_554492_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily
GCF_009866885.1_ASM986688v1	NZ_CP023861	Listeria monocytogenes EGD-e chromosome, complete genome	3	1136612-1136691	3	CRISPRCasFinder	no	csa3	csa3,DinG,cas3,WYL,casR,DEDDh	Type I-A	AAACATTCAAGTGTTTGTTTGAATA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|74aa|down_8|NZ_CP023861.1_1145721_1145943_-,NA|97aa|down_9|NZ_CP023861.1_1145939_1146230_-	NA|497aa|up_9|NZ_CP023861.1_1126702_1128193_+	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated	NA|275aa|up_8|NZ_CP023861.1_1128204_1129029_+	PRK00768, nadE, ammonia-dependent NAD(+) synthetase	NA|103aa|up_7|NZ_CP023861.1_1129041_1129350_+	COG1359, COG1359, Uncharacterized conserved protein [Function unknown]	NA|135aa|up_6|NZ_CP023861.1_1129410_1129815_+	COG1440, CelA, Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]	NA|519aa|up_5|NZ_CP023861.1_1129943_1131500_+	PRK00074, guaA, GMP synthase; Reviewed	NA|401aa|up_4|NZ_CP023861.1_1131556_1132759_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|up_3|NZ_CP023861.1_1132785_1132986_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|up_2|NZ_CP023861.1_1133464_1133695_-	pfam12645, HTH_16, Helix-turn-helix domain	NA|140aa|up_1|NZ_CP023861.1_1133696_1134116_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|708aa|up_0|NZ_CP023861.1_1134470_1136594_-	cd07545, P-type_ATPase_Cd-like, P-type heavy metal-transporting ATPase, similar to Staphylococcus aureus plasmid pI258 CadA, a cadmium-efflux ATPase	NA|167aa|down_0|NZ_CP023861.1_1136898_1137399_+	PRK14797, PRK14797, lipoprotein signal peptidase; Provisional	csa3|112aa|down_1|NZ_CP023861.1_1137531_1137867_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|306aa|down_2|NZ_CP023861.1_1137995_1138913_-	pfam12642, TpcC, Conjugative transposon protein TcpC	NA|337aa|down_3|NZ_CP023861.1_1138928_1139939_-	pfam13702, Lysozyme_like, Lysozyme-like	NA|720aa|down_4|NZ_CP023861.1_1139938_1142098_-	pfam01490, Aa_trans, Transmembrane amino acid transporter protein	NA|817aa|down_5|NZ_CP023861.1_1142097_1144548_-	pfam12846, AAA_10, AAA-like domain	NA|132aa|down_6|NZ_CP023861.1_1144531_1144927_-	pfam12648, TcpE, TcpE family	NA|167aa|down_7|NZ_CP023861.1_1145209_1145710_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|74aa|down_8|NZ_CP023861.1_1145721_1145943_-	NA	NA|97aa|down_9|NZ_CP023861.1_1145939_1146230_-	NA
GCF_009866885.1_ASM986688v1	NZ_CP023861	Listeria monocytogenes EGD-e chromosome, complete genome	4	2779693-2779803	4	CRISPRCasFinder	no		csa3,DinG,cas3,WYL,casR,DEDDh	Orphan	AGCGATGATTTAATCCTTCCCAGAACTTTCAAAA	34	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,DEDDh	NA,NA|74aa|down_2|NZ_CP023861.1_2780572_2780794_-,NA|52aa|down_4|NZ_CP023861.1_2782734_2782890_+,NA|214aa|down_5|NZ_CP023861.1_2783461_2784103_-	NA|330aa|up_9|NZ_CP023861.1_2771618_2772608_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP023861.1_2772629_2773226_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP023861.1_2773229_2773604_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP023861.1_2773709_2774561_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP023861.1_2774679_2775519_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP023861.1_2775639_2776482_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP023861.1_2776527_2776773_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP023861.1_2776787_2777384_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP023861.1_2777492_2777810_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|580aa|up_0|NZ_CP023861.1_2777839_2779579_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP023861.1_2779905_2780370_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP023861.1_2780387_2780570_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP023861.1_2780572_2780794_-	NA	NA|455aa|down_3|NZ_CP023861.1_2780928_2782293_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP023861.1_2782734_2782890_+	NA	NA|214aa|down_5|NZ_CP023861.1_2783461_2784103_-	NA	NA|505aa|down_6|NZ_CP023861.1_2784800_2786315_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP023861.1_2786430_2787369_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP023861.1_2787411_2788359_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP023861.1_2788499_2790239_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
