assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	1	1245736-1245846	1	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Orphan	CATCACTCCCTCTCCCGCTTGCGGGAGAGGGTTGGGGTGAGG	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA,NA	NA|507aa|up_9|NZ_CP044549.1_1232297_1233818_-	pfam14312, FG-GAP_2, FG-GAP repeat	NA|248aa|up_8|NZ_CP044549.1_1233956_1234700_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|145aa|up_7|NZ_CP044549.1_1234696_1235131_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|617aa|up_6|NZ_CP044549.1_1235168_1237019_+	COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]	NA|331aa|up_5|NZ_CP044549.1_1237025_1238018_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|528aa|up_4|NZ_CP044549.1_1238133_1239717_-	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)	NA|526aa|up_3|NZ_CP044549.1_1239746_1241324_-	PRK11903, PRK11903, 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase	NA|307aa|up_2|NZ_CP044549.1_1241523_1242444_+	PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional regulator; Reviewed	NA|556aa|up_1|NZ_CP044549.1_1242601_1244269_+	PRK08184, PRK08184, benzoyl-CoA-dihydrodiol lyase; Provisional	NA|476aa|up_0|NZ_CP044549.1_1244304_1245732_+	TIGR03225, benzo_boxB, benzoyl-CoA oxygenase, B subunit	NA|434aa|down_0|NZ_CP044549.1_1245919_1247221_+	TIGR03224, benzo_boxA, benzoyl-CoA oxygenase/reductase, BoxA protein	NA|211aa|down_1|NZ_CP044549.1_1247542_1248175_+	PRK00129, upp, uracil phosphoribosyltransferase; Reviewed	NA|854aa|down_2|NZ_CP044549.1_1248355_1250917_+	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|140aa|down_3|NZ_CP044549.1_1250926_1251346_+	cd14773, TrHb2_PhHbO-like_O, Truncated hemoglobins, group 2 (O); Pseudoalteromonas haloplanktis PhHbO like	NA|522aa|down_4|NZ_CP044549.1_1251472_1253038_+	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|399aa|down_5|NZ_CP044549.1_1253093_1254290_+	PRK08256, PRK08256, lipid-transfer protein; Provisional	NA|279aa|down_6|NZ_CP044549.1_1254329_1255166_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|395aa|down_7|NZ_CP044549.1_1255202_1256387_+	PRK08256, PRK08256, lipid-transfer protein; Provisional	NA|263aa|down_8|NZ_CP044549.1_1256399_1257188_+	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs	NA|915aa|down_9|NZ_CP044549.1_1257203_1259948_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	2	1598455-1598820	1	CRT	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Orphan	ACCGCAGGGGGAACCGCA	18	6	12	1598473-1598526|1598473-1598526|1598545-1598610|1598545-1598610|1598629-1598682|1598629-1598682|1598701-1598718|1598701-1598718|1598737-1598766|1598737-1598766|1598785-1598802|1598785-1598802	NZ_CP044549.1_1598773-1598826|NZ_CP044549.1_1598785-1598838|NZ_CP044549.1_1598761-1598826|NZ_CP044549.1_1598773-1598838|NZ_CP044549.1_1598773-1598826|NZ_CP044549.1_1598785-1598838|NZ_CP044549.1_1598809-1598826|NZ_CP044549.1_1598821-1598838|NZ_CP044549.1_1598797-1598826|NZ_CP044549.1_1598809-1598838|NZ_CP044549.1_1598809-1598826|NZ_CP044549.1_1598821-1598838	NA	6	6	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA|57aa|up_1|NZ_CP044549.1_1594789_1594960_+,NA	NA|323aa|up_9|NZ_CP044549.1_1587386_1588355_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|312aa|up_8|NZ_CP044549.1_1588372_1589308_-	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|321aa|up_7|NZ_CP044549.1_1589304_1590267_-	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|170aa|up_6|NZ_CP044549.1_1590256_1590766_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|320aa|up_5|NZ_CP044549.1_1590776_1591736_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|151aa|up_4|NZ_CP044549.1_1591725_1592178_-	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain	NA|448aa|up_3|NZ_CP044549.1_1592183_1593527_-	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)	NA|352aa|up_2|NZ_CP044549.1_1593572_1594628_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|57aa|up_1|NZ_CP044549.1_1594789_1594960_+	NA	NA|353aa|up_0|NZ_CP044549.1_1596597_1597656_+	pfam10546, P63C, P63C domain	NA|150aa|down_0|NZ_CP044549.1_1599029_1599479_-	pfam13474, SnoaL_3, SnoaL-like domain	NA|174aa|down_1|NZ_CP044549.1_1600328_1600850_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|390aa|down_2|NZ_CP044549.1_1601035_1602205_-	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|284aa|down_3|NZ_CP044549.1_1602677_1603529_+	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family	NA|129aa|down_4|NZ_CP044549.1_1603621_1604008_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|195aa|down_5|NZ_CP044549.1_1604035_1604620_+	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|70aa|down_6|NZ_CP044549.1_1604763_1604973_+	COG3181, COG3181, Uncharacterized protein conserved in bacteria [Function unknown]	NA|261aa|down_7|NZ_CP044549.1_1605469_1606252_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|324aa|down_8|NZ_CP044549.1_1606551_1607523_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|377aa|down_9|NZ_CP044549.1_1607657_1608788_-	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	3	3712353-3712496	2	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Orphan	CTCTCTGGCGCGCCTTCGGCGCTTGGAGGGGGGACGACACCTTGGGCCG	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA|67aa|up_9|NZ_CP044549.1_3703965_3704166_-,NA|198aa|up_8|NZ_CP044549.1_3704457_3705051_-,NA	NA|67aa|up_9|NZ_CP044549.1_3703965_3704166_-	NA	NA|198aa|up_8|NZ_CP044549.1_3704457_3705051_-	NA	NA|271aa|up_7|NZ_CP044549.1_3705052_3705865_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|291aa|up_6|NZ_CP044549.1_3706494_3707367_+	pfam05681, Fumerase, Fumarate hydratase (Fumerase)	NA|207aa|up_5|NZ_CP044549.1_3707377_3707998_+	PRK06043, PRK06043, fumarate hydratase; Provisional	NA|329aa|up_4|NZ_CP044549.1_3708062_3709049_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|317aa|up_3|NZ_CP044549.1_3709098_3710049_+	pfam04909, Amidohydro_2, Amidohydrolase	NA|209aa|up_2|NZ_CP044549.1_3710073_3710700_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|240aa|up_1|NZ_CP044549.1_3710723_3711443_+	COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]	NA|285aa|up_0|NZ_CP044549.1_3711465_3712320_+	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain	NA|325aa|down_0|NZ_CP044549.1_3712628_3713603_-	cd13579, PBP2_Bug_NagM, Uncharacterized NagM-like protein of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold	NA|492aa|down_1|NZ_CP044549.1_3713602_3715078_-	pfam00221, Lyase_aromatic, Aromatic amino acid lyase	NA|600aa|down_2|NZ_CP044549.1_3715153_3716953_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|336aa|down_3|NZ_CP044549.1_3716963_3717971_-	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|256aa|down_4|NZ_CP044549.1_3718254_3719022_-	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|403aa|down_5|NZ_CP044549.1_3719060_3720269_-	PRK09050, PRK09050, beta-ketoadipyl CoA thiolase; Validated	NA|214aa|down_6|NZ_CP044549.1_3720312_3720954_-	TIGR02428, 3-oxoadipate_CoA-transferase_subunit_B, 3-oxoacid CoA-transferase, B subunit	NA|234aa|down_7|NZ_CP044549.1_3720968_3721670_-	TIGR02429, 3-oxoadipate_CoA-transferase_subunit_A, 3-oxoacid CoA-transferase, A subunit	NA|269aa|down_8|NZ_CP044549.1_3721772_3722579_+	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family	NA|811aa|down_9|NZ_CP044549.1_3723223_3725656_-	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	4	4387735-4387830	3	CRISPRCasFinder	no	RT	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Unclear	CCATCCAGAGGCATCGAGGGACGGCTGCGCC	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA,NA	NA|325aa|up_9|NZ_CP044549.1_4379122_4380097_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|210aa|up_8|NZ_CP044549.1_4380186_4380816_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|218aa|up_7|NZ_CP044549.1_4380885_4381539_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|98aa|up_6|NZ_CP044549.1_4381493_4381787_-	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]	NA|173aa|up_5|NZ_CP044549.1_4381799_4382318_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|205aa|up_4|NZ_CP044549.1_4382354_4382969_-	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair]	NA|453aa|up_3|NZ_CP044549.1_4382993_4384352_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|477aa|up_2|NZ_CP044549.1_4384365_4385796_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|352aa|up_1|NZ_CP044549.1_4385837_4386893_+	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|280aa|up_0|NZ_CP044549.1_4386889_4387729_+	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed	NA|438aa|down_0|NZ_CP044549.1_4387911_4389225_-	PRK11715, PRK11715, cell envelope integrity protein CreD	NA|480aa|down_1|NZ_CP044549.1_4389319_4390759_-	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional	NA|236aa|down_2|NZ_CP044549.1_4390777_4391485_-	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|773aa|down_3|NZ_CP044549.1_4391625_4393944_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|242aa|down_4|NZ_CP044549.1_4393954_4394680_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|710aa|down_5|NZ_CP044549.1_4394719_4396849_-	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]	NA|367aa|down_6|NZ_CP044549.1_4396889_4397990_-	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain	NA|382aa|down_7|NZ_CP044549.1_4397990_4399136_-	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	NA|272aa|down_8|NZ_CP044549.1_4399164_4399980_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|324aa|down_9|NZ_CP044549.1_4400183_4401155_+	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	5	4490502-4490590	4	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Orphan	GCGCGCCACAGGCGCTGCACTCC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA|133aa|up_4|NZ_CP044549.1_4482993_4483392_+,NA|3280aa|down_3|NZ_CP044549.1_4496919_4506759_-	NA|342aa|up_9|NZ_CP044549.1_4475607_4476633_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|843aa|up_8|NZ_CP044549.1_4476726_4479255_+	PRK10044, PRK10044, ferrichrome outer membrane transporter; Provisional	NA|388aa|up_7|NZ_CP044549.1_4479277_4480441_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|363aa|up_6|NZ_CP044549.1_4480607_4481695_-	pfam00665, rve, Integrase core domain	NA|196aa|up_5|NZ_CP044549.1_4482135_4482723_-	cd17580, REC_2_DhkD-like, second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal transduction histidine kinase D and similar domains	NA|133aa|up_4|NZ_CP044549.1_4482993_4483392_+	NA	NA|271aa|up_3|NZ_CP044549.1_4484707_4485520_-	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|331aa|up_2|NZ_CP044549.1_4485516_4486509_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|260aa|up_1|NZ_CP044549.1_4486526_4487306_-	COG0020, UppS, Undecaprenyl pyrophosphate synthase [Lipid metabolism]	NA|684aa|up_0|NZ_CP044549.1_4487532_4489584_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|595aa|down_0|NZ_CP044549.1_4491672_4493457_-	PRK14016, PRK14016, cyanophycin synthetase; Provisional	NA|877aa|down_1|NZ_CP044549.1_4493449_4496080_-	PRK14016, PRK14016, cyanophycin synthetase; Provisional	NA|232aa|down_2|NZ_CP044549.1_4496109_4496805_-	pfam07277, SapC, SapC	NA|3280aa|down_3|NZ_CP044549.1_4496919_4506759_-	NA	NA|102aa|down_4|NZ_CP044549.1_4508325_4508631_-	smart00387, HATPase_c, Histidine kinase-like ATPases	NA|182aa|down_5|NZ_CP044549.1_4508911_4509457_-	TIGR00229, Sensor_protein_FixL, PAS domain S-box	NA|402aa|down_6|NZ_CP044549.1_4510238_4511444_-	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|737aa|down_7|NZ_CP044549.1_4511440_4513651_-	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family	NA|415aa|down_8|NZ_CP044549.1_4513640_4514885_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|150aa|down_9|NZ_CP044549.1_4514975_4515425_-	pfam04519, Bactofilin, Polymer-forming cytoskeletal
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	6	4679739-4679833	5	CRISPRCasFinder	no	DEDDh	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Unclear	GGCGCAGCCGTCCCTCGATGCCCCTGG	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA,NA	NA|331aa|up_9|NZ_CP044549.1_4665486_4666479_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|258aa|up_8|NZ_CP044549.1_4666601_4667375_-	cd05233, SDR_c, classical (c) SDRs	NA|539aa|up_7|NZ_CP044549.1_4667371_4668988_-	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated	NA|144aa|up_6|NZ_CP044549.1_4668984_4669416_-	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit	NA|158aa|up_5|NZ_CP044549.1_4669445_4669919_-	cd03454, YdeM, YdeM is a Bacillus subtilis protein that belongs to a family of prokaryotic proteins of unkown function	NA|261aa|up_4|NZ_CP044549.1_4670146_4670929_+	PRK09834, PRK09834, DNA-binding transcriptional regulator	NA|433aa|up_3|NZ_CP044549.1_4671228_4672527_+	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|1066aa|up_2|NZ_CP044549.1_4672603_4675801_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|465aa|up_1|NZ_CP044549.1_4675860_4677255_+	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|649aa|up_0|NZ_CP044549.1_4677382_4679329_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|343aa|down_0|NZ_CP044549.1_4679880_4680909_-	cd06307, PBP1_sugar_binding, periplasmic sugar-binding domain of uncharacterized transport systems	NA|230aa|down_1|NZ_CP044549.1_4681133_4681823_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|224aa|down_2|NZ_CP044549.1_4681819_4682491_+	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|243aa|down_3|NZ_CP044549.1_4682508_4683237_+	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|265aa|down_4|NZ_CP044549.1_4683283_4684078_+	cd01072, PBP2_SMa0082_like, The substrate-binding domain of putatuve amino acid transporter; the type 2 periplasmic binding protein fold	NA|181aa|down_5|NZ_CP044549.1_4684116_4684659_+	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|425aa|down_6|NZ_CP044549.1_4684660_4685935_+	cd08207, RLP_NonPhot, Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria	NA|439aa|down_7|NZ_CP044549.1_4685939_4687256_+	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|533aa|down_8|NZ_CP044549.1_4687259_4688858_-	pfam01384, PHO4, Phosphate transporter family	DEDDh|202aa|down_9|NZ_CP044549.1_4688934_4689540_-	PRK05359, PRK05359, oligoribonuclease; Provisional
GCF_009859475.1_ASM985947v1	NZ_CP044549	Hydrogenophaga sp. BPS33 chromosome, complete genome	7	5098429-5098517	6	CRISPRCasFinder	no		DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	Orphan	GCCGTCCCTCGATGCCTCTGGATG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA|100aa|up_8|NZ_CP044549.1_5090176_5090476_+,NA|727aa|up_2|NZ_CP044549.1_5094538_5096719_+,NA|91aa|up_0|NZ_CP044549.1_5098067_5098340_+,NA	NA|376aa|up_9|NZ_CP044549.1_5088938_5090066_-	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain	NA|100aa|up_8|NZ_CP044549.1_5090176_5090476_+	NA	NA|183aa|up_7|NZ_CP044549.1_5090486_5091035_-	PRK11280, PRK11280, hypothetical protein; Provisional	NA|329aa|up_6|NZ_CP044549.1_5091235_5092222_-	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|188aa|up_5|NZ_CP044549.1_5092603_5093167_-	cd10032, UDG-F6_HDG, Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins	NA|281aa|up_4|NZ_CP044549.1_5093163_5094006_-	COG0084, TatD, Mg-dependent DNase [DNA replication, recombination, and repair]	NA|142aa|up_3|NZ_CP044549.1_5094100_5094526_+	pfam03724, META, META domain	NA|727aa|up_2|NZ_CP044549.1_5094538_5096719_+	NA	NA|395aa|up_1|NZ_CP044549.1_5096787_5097972_+	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa	NA|91aa|up_0|NZ_CP044549.1_5098067_5098340_+	NA	NA|281aa|down_0|NZ_CP044549.1_5098618_5099461_+	PRK06142, PRK06142, crotonase/enoyl-CoA hydratase family protein	NA|142aa|down_1|NZ_CP044549.1_5099465_5099891_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|355aa|down_2|NZ_CP044549.1_5100012_5101077_+	PRK07589, PRK07589, ornithine cyclodeaminase; Validated	NA|349aa|down_3|NZ_CP044549.1_5101101_5102148_-	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|401aa|down_4|NZ_CP044549.1_5102144_5103347_-	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|327aa|down_5|NZ_CP044549.1_5103357_5104338_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|315aa|down_6|NZ_CP044549.1_5104460_5105405_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|342aa|down_7|NZ_CP044549.1_5105529_5106555_+	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|191aa|down_8|NZ_CP044549.1_5106747_5107320_+	PRK12514, PRK12514, RNA polymerase sigma factor; Provisional	NA|260aa|down_9|NZ_CP044549.1_5107333_5108113_+	COG5343, COG5343, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_009859475.1_ASM985947v1	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	1	8354-8437	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	CATCATACGCTGTACAGCGTATAAACCCA	29	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA|230aa|up_4|NZ_CP044550.1_4413_5103_-,NA|316aa|up_3|NZ_CP044550.1_5913_6861_+,NA|219aa|up_2|NZ_CP044550.1_6884_7541_+,NA|71aa|up_1|NZ_CP044550.1_7663_7876_+,NA|104aa|up_0|NZ_CP044550.1_7973_8285_+,NA|365aa|down_0|NZ_CP044550.1_8445_9540_+	NA|NA	NA	NA|NA	NA	NA|403aa|up_7|NZ_CP044550.1_0_1209_+	TIGR03453, partition_RepA, plasmid partitioning protein RepA	NA|341aa|up_6|NZ_CP044550.1_1213_2236_+	cd16405, RepB_like_N, plasmid segregation replication protein B like protein, N-terminal domain	NA|630aa|up_5|NZ_CP044550.1_2527_4417_-	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|230aa|up_4|NZ_CP044550.1_4413_5103_-	NA	NA|316aa|up_3|NZ_CP044550.1_5913_6861_+	NA	NA|219aa|up_2|NZ_CP044550.1_6884_7541_+	NA	NA|71aa|up_1|NZ_CP044550.1_7663_7876_+	NA	NA|104aa|up_0|NZ_CP044550.1_7973_8285_+	NA	NA|365aa|down_0|NZ_CP044550.1_8445_9540_+	NA	NA|99aa|down_1|NZ_CP044550.1_9563_9860_+	pfam01527, HTH_Tnp_1, Transposase	NA|257aa|down_2|NZ_CP044550.1_9856_10627_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|459aa|down_3|NZ_CP044550.1_10517_11894_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|395aa|down_4|NZ_CP044550.1_13395_14580_-	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters	NA|489aa|down_5|NZ_CP044550.1_14581_16048_-	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	csa3|103aa|down_6|NZ_CP044550.1_16109_16418_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|655aa|down_7|NZ_CP044550.1_16560_18525_+	COG5635, COG5635, Predicted NTPase (NACHT family) [Signal transduction mechanisms]	NA|436aa|down_8|NZ_CP044550.1_18556_19864_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|482aa|down_9|NZ_CP044550.1_19860_21306_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_009859475.1_ASM985947v1	NZ_CP044550	Hydrogenophaga sp. BPS33 plasmid pBPS33-1, complete sequence	2	159281-159379	2	CRISPRCasFinder	no		csa3	Orphan	GGCCCACCTTGGGCCTCTGGCGGCCCA	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,Cas9_archaeal,csa3,WYL,DinG,PD-DExK,RT	NA|156aa|up_8|NZ_CP044550.1_149918_150386_-,NA|60aa|up_7|NZ_CP044550.1_150547_150727_-,NA|69aa|up_6|NZ_CP044550.1_150938_151145_-,NA|421aa|up_4|NZ_CP044550.1_152121_153384_-,NA|61aa|up_1|NZ_CP044550.1_156316_156499_-,NA|133aa|down_1|NZ_CP044550.1_160647_161046_+,NA|100aa|down_2|NZ_CP044550.1_161159_161459_+	NA|379aa|up_9|NZ_CP044550.1_148743_149879_-	pfam00665, rve, Integrase core domain	NA|156aa|up_8|NZ_CP044550.1_149918_150386_-	NA	NA|60aa|up_7|NZ_CP044550.1_150547_150727_-	NA	NA|69aa|up_6|NZ_CP044550.1_150938_151145_-	NA	NA|99aa|up_5|NZ_CP044550.1_151426_151723_-	PLN02976, PLN02976, amine oxidase	NA|421aa|up_4|NZ_CP044550.1_152121_153384_-	NA	NA|557aa|up_3|NZ_CP044550.1_153804_155475_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|149aa|up_2|NZ_CP044550.1_155655_156102_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|61aa|up_1|NZ_CP044550.1_156316_156499_-	NA	NA|492aa|up_0|NZ_CP044550.1_156495_157971_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|358aa|down_0|NZ_CP044550.1_159553_160627_+	TIGR03739, PRTRC_D, PRTRC system protein D	NA|133aa|down_1|NZ_CP044550.1_160647_161046_+	NA	NA|100aa|down_2|NZ_CP044550.1_161159_161459_+	NA	NA|972aa|down_3|NZ_CP044550.1_161571_164487_-	pfam01526, DDE_Tnp_Tn3, Tn3 transposase DDE domain	NA|118aa|down_4|NZ_CP044550.1_164601_164955_-	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|275aa|down_5|NZ_CP044550.1_165002_165827_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|303aa|down_6|NZ_CP044550.1_165798_166707_-	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family;  contains the type 2 periplasmic binding fold	NA|314aa|down_7|NZ_CP044550.1_166944_167886_-	cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	NA|318aa|down_8|NZ_CP044550.1_167963_168917_-	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold	NA|427aa|down_9|NZ_CP044550.1_168991_170272_-	cd03479, Rieske_RO_Alpha_PhDO_like, Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA)
