assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009856645.1_ASM985664v1	NZ_CP047235	Gordonia sp. JH63 chromosome, complete genome	1	2750223-2750321	1	CRISPRCasFinder	no	csa3	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	Type I-A	ATTCGGCCCGCTCGCTCCGCTCCC	24	1	1	2750247-2750297	NZ_CP047235.1_2750284-2750334	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	NA,NA|448aa|down_0|NZ_CP047235.1_2750372_2751716_-,NA|288aa|down_6|NZ_CP047235.1_2756215_2757079_-	NA|126aa|up_9|NZ_CP047235.1_2741261_2741639_+	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown]	NA|412aa|up_8|NZ_CP047235.1_2741635_2742871_+	COG4941, COG4941, Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]	NA|537aa|up_7|NZ_CP047235.1_2743061_2744672_+	PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated	NA|267aa|up_6|NZ_CP047235.1_2744714_2745515_-	PRK07509, PRK07509, crotonase/enoyl-CoA hydratase family protein	NA|242aa|up_5|NZ_CP047235.1_2745519_2746245_-	PHA03247, PHA03247, large tegument protein UL36; Provisional	NA|373aa|up_4|NZ_CP047235.1_2746300_2747419_-	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]	NA|311aa|up_3|NZ_CP047235.1_2747415_2748348_-	COG3752, COG3752, Steroid 5-alpha reductase family enzyme [General function prediction only]	NA|159aa|up_2|NZ_CP047235.1_2748347_2748824_-	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|239aa|up_1|NZ_CP047235.1_2748884_2749601_-	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|199aa|up_0|NZ_CP047235.1_2749597_2750194_-	cd02109, arch_bact_SO_family_Moco, bacterial and archael members of the sulfite oxidase (SO) family of molybdopterin binding domains	NA|448aa|down_0|NZ_CP047235.1_2750372_2751716_-	NA	NA|120aa|down_1|NZ_CP047235.1_2751712_2752072_-	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family	NA|68aa|down_2|NZ_CP047235.1_2752146_2752350_-	pfam11160, DUF2945, Protein of unknown function (DUF2945)	NA|322aa|down_3|NZ_CP047235.1_2752447_2753413_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|530aa|down_4|NZ_CP047235.1_2753417_2755007_+	COG3559, TnrB3, Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]	NA|287aa|down_5|NZ_CP047235.1_2755300_2756161_-	TIGR03620, F420_MSMEG_4141, probable F420-dependent oxidoreductase, MSMEG_4141 family	NA|288aa|down_6|NZ_CP047235.1_2756215_2757079_-	NA	NA|398aa|down_7|NZ_CP047235.1_2757207_2758401_-	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|821aa|down_8|NZ_CP047235.1_2758630_2761093_+	cd01948, EAL, EAL domain	NA|489aa|down_9|NZ_CP047235.1_2761315_2762782_+	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily
GCF_009856645.1_ASM985664v1	NZ_CP047235	Gordonia sp. JH63 chromosome, complete genome	2	3360323-3360415	2	CRISPRCasFinder	no	WYL	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	Unclear	TCGGGACCCCAGTCCTATTCGGGC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	NA,NA|160aa|down_5|NZ_CP047235.1_3368297_3368777_-,NA|113aa|down_8|NZ_CP047235.1_3370056_3370395_+,NA|60aa|down_9|NZ_CP047235.1_3370391_3370571_+	NA|231aa|up_9|NZ_CP047235.1_3350246_3350939_-	PRK07238, PRK07238, bifunctional RNase H/acid phosphatase; Provisional	NA|246aa|up_8|NZ_CP047235.1_3350943_3351681_-	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	NA|371aa|up_7|NZ_CP047235.1_3351762_3352875_-	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3)	NA|381aa|up_6|NZ_CP047235.1_3352882_3354025_-	PRK07908, PRK07908, threonine-phosphate decarboxylase	NA|229aa|up_5|NZ_CP047235.1_3354055_3354742_+	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|160aa|up_4|NZ_CP047235.1_3354792_3355272_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|335aa|up_3|NZ_CP047235.1_3355289_3356294_-	pfam15887, Peptidase_Mx, Putative zinc-binding metallo-peptidase	NA|312aa|up_2|NZ_CP047235.1_3356382_3357318_+	COG3346, COG3346, Uncharacterized conserved protein [Function unknown]	NA|364aa|up_1|NZ_CP047235.1_3357295_3358387_-	PRK01209, cobD, cobalamin biosynthesis protein	NA|270aa|up_0|NZ_CP047235.1_3358343_3359153_+	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|275aa|down_0|NZ_CP047235.1_3362129_3362954_-	TIGR03083, TIGR03083, uncharacterized Actinobacterial protein TIGR03083	NA|522aa|down_1|NZ_CP047235.1_3363111_3364677_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	WYL|328aa|down_2|NZ_CP047235.1_3364747_3365731_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|364aa|down_3|NZ_CP047235.1_3365833_3366925_+	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|236aa|down_4|NZ_CP047235.1_3366976_3367684_+	pfam02517, Abi, CAAX protease self-immunity	NA|160aa|down_5|NZ_CP047235.1_3368297_3368777_-	NA	NA|221aa|down_6|NZ_CP047235.1_3368769_3369432_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|167aa|down_7|NZ_CP047235.1_3369556_3370057_+	pfam03780, Asp23, Asp23 family, cell envelope-related function	NA|113aa|down_8|NZ_CP047235.1_3370056_3370395_+	NA	NA|60aa|down_9|NZ_CP047235.1_3370391_3370571_+	NA
GCF_009856645.1_ASM985664v1	NZ_CP047235	Gordonia sp. JH63 chromosome, complete genome	3	3844340-3844416	3	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh,cas4,RT	Orphan	CAGCAGTACGGGGCACCCCAGCAGTACGG	29	1	1	3844369-3844387	NZ_CP047235.1_4007843-4007825	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	NA|103aa|up_5|NZ_CP047235.1_3838223_3838532_-,NA|127aa|up_3|NZ_CP047235.1_3838910_3839291_-,NA|175aa|up_0|NZ_CP047235.1_3843539_3844064_+,NA	NA|277aa|up_9|NZ_CP047235.1_3834612_3835443_-	pfam14011, ESX-1_EspG, EspG family	NA|353aa|up_8|NZ_CP047235.1_3835439_3836498_-	pfam00823, PPE, PPE family	NA|104aa|up_7|NZ_CP047235.1_3836575_3836887_-	pfam00934, PE, PE family	NA|448aa|up_6|NZ_CP047235.1_3836883_3838227_-	PLN03138, PLN03138, Protein TOC75; Provisional	NA|103aa|up_5|NZ_CP047235.1_3838223_3838532_-	NA	NA|104aa|up_4|NZ_CP047235.1_3838590_3838902_-	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|127aa|up_3|NZ_CP047235.1_3838910_3839291_-	NA	NA|209aa|up_2|NZ_CP047235.1_3841560_3842187_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|359aa|up_1|NZ_CP047235.1_3842428_3843505_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|175aa|up_0|NZ_CP047235.1_3843539_3844064_+	NA	NA|313aa|down_0|NZ_CP047235.1_3844878_3845817_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|207aa|down_1|NZ_CP047235.1_3845773_3846394_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|351aa|down_2|NZ_CP047235.1_3846476_3847529_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|202aa|down_3|NZ_CP047235.1_3847620_3848226_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|136aa|down_4|NZ_CP047235.1_3848250_3848658_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|123aa|down_5|NZ_CP047235.1_3848657_3849026_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|38aa|down_6|NZ_CP047235.1_3849236_3849350_-	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|74aa|down_7|NZ_CP047235.1_3849467_3849689_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|131aa|down_8|NZ_CP047235.1_3850309_3850702_+	COG1950, COG1950, Predicted membrane protein [Function unknown]	NA|250aa|down_9|NZ_CP047235.1_3850698_3851448_+	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]
GCF_009856645.1_ASM985664v1	NZ_CP047235	Gordonia sp. JH63 chromosome, complete genome	4	4719021-4719137	4	CRISPRCasFinder	no		csa3,WYL,cas3,DinG,DEDDh,cas4,RT	Orphan	CCCCCCGCTGGTTGAGCCGGCACCGAGCGAAGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	NA,NA|132aa|down_7|NZ_CP047235.1_4730090_4730486_-,NA|516aa|down_8|NZ_CP047235.1_4730491_4732039_-,NA|293aa|down_9|NZ_CP047235.1_4732035_4732914_-	NA|388aa|up_9|NZ_CP047235.1_4704694_4705858_-	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain	NA|186aa|up_8|NZ_CP047235.1_4705956_4706514_+	cd00293, USP_Like, Usp: Universal stress protein family	NA|322aa|up_7|NZ_CP047235.1_4706903_4707869_+	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]	NA|241aa|up_6|NZ_CP047235.1_4707905_4708628_+	cd03139, GATase1_PfpI_2, Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus	NA|67aa|up_5|NZ_CP047235.1_4708703_4708904_+	pfam11021, DUF2613, Protein of unknown function (DUF2613)	NA|1436aa|up_4|NZ_CP047235.1_4709025_4713333_+	pfam11847, DUF3367, Domain of unknown function (DUF3367)	NA|395aa|up_3|NZ_CP047235.1_4714528_4715713_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|157aa|up_2|NZ_CP047235.1_4715725_4716196_-	cd07825, SRPBCC_7, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|395aa|up_1|NZ_CP047235.1_4716245_4717430_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|313aa|up_0|NZ_CP047235.1_4717592_4718531_+	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism]	NA|387aa|down_0|NZ_CP047235.1_4720432_4721593_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|256aa|down_1|NZ_CP047235.1_4721696_4722464_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|274aa|down_2|NZ_CP047235.1_4722569_4723391_-	pfam06933, SSP160, Special lobe-specific silk protein SSP160	NA|849aa|down_3|NZ_CP047235.1_4723446_4725993_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|272aa|down_4|NZ_CP047235.1_4726014_4726830_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|336aa|down_5|NZ_CP047235.1_4726969_4727977_-	pfam13449, Phytase-like, Esterase-like activity of phytase	NA|609aa|down_6|NZ_CP047235.1_4728052_4729879_-	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP)	NA|132aa|down_7|NZ_CP047235.1_4730090_4730486_-	NA	NA|516aa|down_8|NZ_CP047235.1_4730491_4732039_-	NA	NA|293aa|down_9|NZ_CP047235.1_4732035_4732914_-	NA
GCF_009856645.1_ASM985664v1	NZ_CP047235	Gordonia sp. JH63 chromosome, complete genome	5	5171411-5171617	1	CRT	no		csa3,WYL,cas3,DinG,DEDDh,cas4,RT	Orphan	GNCGCGCCCTCCGCAAGCTCCGGNC	25	1	24	5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454|5171436-5171454	NZ_CP047235.1_2653044-2653026|NZ_CP047235.1_2653993-2653975|NZ_CP047235.1_2654037-2654019|NZ_CP047235.1_3367751-3367733|NZ_CP047235.1_4110477-4110459|NZ_CP047235.1_4447000-4446982|NZ_CP047235.1_4447036-4447018|NZ_CP047235.1_4447072-4447054|NZ_CP047235.1_4865718-4865736|NZ_CP047235.1_4865754-4865772|NZ_CP047235.1_5137920-5137938|NZ_CP047235.1_649058-649040|NZ_CP047235.1_1208757-1208739|NZ_CP047235.1_1637170-1637188|NZ_CP047235.1_3112262-3112244|NZ_CP047235.1_3773316-3773334|NZ_CP047235.1_5171319-5171301|NZ_CP047235.1_2652999-2652981|NZ_CP047235.1_3427830-3427812|NZ_CP047235.1_4476182-4476164|NZ_CP047235.1_4751404-4751386|NZ_CP047235.1_4751447-4751429|NZ_CP047235.1_5171247-5171229|NZ_CP047235.1_5171355-5171337	NA	4	4	Orphan	csa3,WYL,cas3,DinG,DEDDh,cas4,RT	NA|258aa|up_8|NZ_CP047235.1_5163108_5163882_+,NA|285aa|up_4|NZ_CP047235.1_5166834_5167689_-,NA|74aa|up_0|NZ_CP047235.1_5171152_5171374_-,NA	NA|189aa|up_9|NZ_CP047235.1_5162340_5162907_+	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed	NA|258aa|up_8|NZ_CP047235.1_5163108_5163882_+	NA	NA|339aa|up_7|NZ_CP047235.1_5164028_5165045_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|113aa|up_6|NZ_CP047235.1_5165103_5165442_+	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin	NA|393aa|up_5|NZ_CP047235.1_5165711_5166890_+	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|285aa|up_4|NZ_CP047235.1_5166834_5167689_-	NA	NA|351aa|up_3|NZ_CP047235.1_5167837_5168890_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|318aa|up_2|NZ_CP047235.1_5168954_5169908_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|236aa|up_1|NZ_CP047235.1_5170077_5170785_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|74aa|up_0|NZ_CP047235.1_5171152_5171374_-	NA	NA|230aa|down_0|NZ_CP047235.1_5172500_5173190_-	COG1847, Jag, Predicted RNA-binding protein [General function prediction only]	NA|402aa|down_1|NZ_CP047235.1_5173235_5174441_-	PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional	NA|142aa|down_2|NZ_CP047235.1_5174468_5174894_-	pfam01809, Haemolytic, Haemolytic domain	NA|143aa|down_3|NZ_CP047235.1_5174893_5175322_-	PRK03459, rnpA, ribonuclease P; Reviewed	NA|48aa|down_4|NZ_CP047235.1_5175369_5175513_-	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
