assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	1	150427-150522	1	CRISPRCasFinder	no	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Type I-D	GTTTCAATCCCTGATAGGGATTT	23	0	0	NA	NA	I-D,II-B	1	1	TypeI-D	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|51aa|up_7|NZ_CP047242.1_121294_121447_-,NA|249aa|up_4|NZ_CP047242.1_143183_143930_-,NA|292aa|up_3|NZ_CP047242.1_145129_146005_+,NA|68aa|down_0|NZ_CP047242.1_150755_150959_+	NA|462aa|up_9|NZ_CP047242.1_118122_119508_-	TIGR01137, Cystathionine_beta-synthase, cystathionine beta-synthase	NA|158aa|up_8|NZ_CP047242.1_120770_121244_+	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982	NA|51aa|up_7|NZ_CP047242.1_121294_121447_-	NA	NA|313aa|up_6|NZ_CP047242.1_121797_122736_-	pfam11949, DUF3466, Protein of unknown function (DUF3466)	NA|6582aa|up_5|NZ_CP047242.1_122788_142534_-	pfam06346, Drf_FH1, Formin Homology Region 1	NA|249aa|up_4|NZ_CP047242.1_143183_143930_-	NA	NA|292aa|up_3|NZ_CP047242.1_145129_146005_+	NA	NA|373aa|up_2|NZ_CP047242.1_146085_147204_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	WYL|289aa|up_1|NZ_CP047242.1_147280_148147_-	pfam13280, WYL, WYL domain	cas3|726aa|up_0|NZ_CP047242.1_148247_150425_+	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain	NA|68aa|down_0|NZ_CP047242.1_150755_150959_+	NA	NA|82aa|down_1|NZ_CP047242.1_151186_151432_+	COG2442, COG2442, Uncharacterized conserved protein [Function unknown]	NA|120aa|down_2|NZ_CP047242.1_151434_151794_+	COG4634, COG4634, Uncharacterized protein conserved in bacteria [Function unknown]	PD-DExK|340aa|down_3|NZ_CP047242.1_151841_152861_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	cas10d|1092aa|down_4|NZ_CP047242.1_152879_156155_+	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d	csc2gr7|339aa|down_5|NZ_CP047242.1_156200_157217_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|236aa|down_6|NZ_CP047242.1_157216_157924_+	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1	2OG_CAS|204aa|down_7|NZ_CP047242.1_158034_158646_+	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	cas6|291aa|down_8|NZ_CP047242.1_158688_159561_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas4|197aa|down_9|NZ_CP047242.1_159645_160236_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	2	162002-164071	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Type I-D	GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG,GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG,GTTTCTATTAACACAAATCCCTATCAGGGATTGAAAG	37,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B	27,28,28	28	TypeI-D	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA,NA|159aa|down_9|NZ_CP047242.1_181486_181963_+	NA|120aa|up_9|NZ_CP047242.1_151434_151794_+	COG4634, COG4634, Uncharacterized protein conserved in bacteria [Function unknown]	PD-DExK|340aa|up_8|NZ_CP047242.1_151841_152861_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	cas10d|1092aa|up_7|NZ_CP047242.1_152879_156155_+	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d	csc2gr7|339aa|up_6|NZ_CP047242.1_156200_157217_+	pfam18320, Csc2, Csc2 Crispr	csc1gr5|236aa|up_5|NZ_CP047242.1_157216_157924_+	cd09711, Csc1_I-D, CRISPR/Cas system-associated protein Csc1	2OG_CAS|204aa|up_4|NZ_CP047242.1_158034_158646_+	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	cas6|291aa|up_3|NZ_CP047242.1_158688_159561_+	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense    mechanisms]	cas4|197aa|up_2|NZ_CP047242.1_159645_160236_+	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4	cas1|334aa|up_1|NZ_CP047242.1_160409_161411_+	TIGR04093, hypothetical_protein_L8106_25395, CRISPR-associated endonuclease Cas1, subtype CYANO	cas2|91aa|up_0|NZ_CP047242.1_161472_161745_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|195aa|down_0|NZ_CP047242.1_164463_165048_-	pfam14015, DUF4231, Protein of unknown function (DUF4231)	NA|246aa|down_1|NZ_CP047242.1_165057_165795_-	pfam18171, LSDAT_prok, SLOG in TRPM, prokaryote	NA|783aa|down_2|NZ_CP047242.1_166179_168528_+	TIGR01901, Heme/hemopexin-binding_protein, filamentous hemagglutinin family N-terminal domain	NA|609aa|down_3|NZ_CP047242.1_168524_170351_+	COG2831, FhaC, Hemolysin activation/secretion protein [Intracellular trafficking and secretion]	NA|922aa|down_4|NZ_CP047242.1_170458_173224_+	COG4995, COG4995, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1049aa|down_5|NZ_CP047242.1_173574_176721_+	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms]	NA|259aa|down_6|NZ_CP047242.1_176744_177521_+	pfam06051, DUF928, Domain of Unknown Function (DUF928)	NA|615aa|down_7|NZ_CP047242.1_178330_180175_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|367aa|down_8|NZ_CP047242.1_180338_181439_+	pfam12902, Ferritin-like, Ferritin-like	NA|159aa|down_9|NZ_CP047242.1_181486_181963_+	NA
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	3	698679-701097	2,3,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC,ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC,ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC,ATTGCAATTAACTAAAATCCCTATCAGGGATTGAAAC	37,37,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B:I-D,II-B	31,33,33,31	33	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|71aa|up_0|NZ_CP047242.1_698456_698669_-,NA|300aa|down_5|NZ_CP047242.1_707339_708239_-,NA|105aa|down_7|NZ_CP047242.1_711044_711359_-,NA|63aa|down_8|NZ_CP047242.1_712015_712204_-,NA|226aa|down_9|NZ_CP047242.1_712683_713361_+	NA|159aa|up_9|NZ_CP047242.1_689762_690239_+	COG0694, COG0694, Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]	NA|391aa|up_8|NZ_CP047242.1_690264_691437_+	cd05819, NHL, NHL repeat unit of beta-propeller proteins	NA|787aa|up_7|NZ_CP047242.1_691460_693821_+	COG0068, HypF, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|87aa|up_6|NZ_CP047242.1_693910_694171_+	pfam01455, HupF_HypC, HupF/HypC family	NA|384aa|up_5|NZ_CP047242.1_694405_695557_+	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional	NA|72aa|up_4|NZ_CP047242.1_695610_695826_+	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]	NA|368aa|up_3|NZ_CP047242.1_696117_697221_+	TIGR02124, Hydrogenase_expression/formation_protein_HypE, hydrogenase expression/formation protein HypE	NA|114aa|up_2|NZ_CP047242.1_697239_697581_+	pfam01155, HypA, Hydrogenase/urease nickel incorporation, metallochaperone, hypA	NA|282aa|up_1|NZ_CP047242.1_697571_698417_+	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional	NA|71aa|up_0|NZ_CP047242.1_698456_698669_-	NA	NA|414aa|down_0|NZ_CP047242.1_701276_702518_+	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family	NA|124aa|down_1|NZ_CP047242.1_702639_703011_-	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|325aa|down_2|NZ_CP047242.1_703083_704058_-	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|357aa|down_3|NZ_CP047242.1_704188_705259_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|641aa|down_4|NZ_CP047242.1_705404_707327_-	COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones]	NA|300aa|down_5|NZ_CP047242.1_707339_708239_-	NA	NA|763aa|down_6|NZ_CP047242.1_708387_710676_-	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB	NA|105aa|down_7|NZ_CP047242.1_711044_711359_-	NA	NA|63aa|down_8|NZ_CP047242.1_712015_712204_-	NA	NA|226aa|down_9|NZ_CP047242.1_712683_713361_+	NA
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	4	2493450-2493707	4	PILER-CR	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	ACTTTTTCATCCTTGAGGATATTAGCGATGTCAGGGACATACTTGGCT	48	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|262aa|up_8|NZ_CP047242.1_2478726_2479512_+,NA|137aa|down_4|NZ_CP047242.1_2499964_2500375_-,NA|51aa|down_5|NZ_CP047242.1_2500773_2500926_-	NA|75aa|up_9|NZ_CP047242.1_2478260_2478485_+	COG1146, COG1146, Ferredoxin [Energy production and conversion]	NA|262aa|up_8|NZ_CP047242.1_2478726_2479512_+	NA	NA|248aa|up_7|NZ_CP047242.1_2479592_2480336_+	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|386aa|up_6|NZ_CP047242.1_2480412_2481570_+	cd00997, PBP2_GluR0, Bacterial GluR0 ligand-binding domain; the type 2 periplasmic binding protein fold	NA|244aa|up_5|NZ_CP047242.1_2482210_2482942_+	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|245aa|up_4|NZ_CP047242.1_2483316_2484051_+	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|738aa|up_3|NZ_CP047242.1_2484446_2486660_+	cd07550, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|166aa|up_2|NZ_CP047242.1_2486877_2487375_+	cd08070, MPN_like, Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding)	NA|391aa|up_1|NZ_CP047242.1_2487438_2488611_+	PRK07411, PRK07411, molybdopterin-synthase adenylyltransferase MoeB	NA|552aa|up_0|NZ_CP047242.1_2488927_2490583_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|552aa|down_0|NZ_CP047242.1_2494814_2496470_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|190aa|down_1|NZ_CP047242.1_2496595_2497165_+	pfam05685, Uma2, Putative restriction endonuclease	NA|391aa|down_2|NZ_CP047242.1_2497380_2498553_+	cd17313, MFS_SLC45_SUC, Solute carrier family 45 and similar sugar transporters of the Major Facilitator Superfamily of transporters	NA|273aa|down_3|NZ_CP047242.1_2498562_2499381_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|137aa|down_4|NZ_CP047242.1_2499964_2500375_-	NA	NA|51aa|down_5|NZ_CP047242.1_2500773_2500926_-	NA	NA|301aa|down_6|NZ_CP047242.1_2501483_2502386_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|752aa|down_7|NZ_CP047242.1_2502725_2504981_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|152aa|down_8|NZ_CP047242.1_2505063_2505519_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|647aa|down_9|NZ_CP047242.1_2505521_2507462_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	5	2525000-2527626	5,4,3,6	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC,GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC,GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC,GTTTTAATTAACAAAAATCCCTATCAGGGATTGAAAC	37,37,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B:I-D,II-B	33,36,36,33	36	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|169aa|up_7|NZ_CP047242.1_2514608_2515115_-,NA|65aa|up_6|NZ_CP047242.1_2515198_2515393_+,NA|126aa|up_5|NZ_CP047242.1_2515375_2515753_-,NA	NA|259aa|up_9|NZ_CP047242.1_2512738_2513515_+	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only]	NA|260aa|up_8|NZ_CP047242.1_2513750_2514530_-	TIGR03069, RNA-binding_S4_domain-containing_protein, photosystem II S4 domain protein	NA|169aa|up_7|NZ_CP047242.1_2514608_2515115_-	NA	NA|65aa|up_6|NZ_CP047242.1_2515198_2515393_+	NA	NA|126aa|up_5|NZ_CP047242.1_2515375_2515753_-	NA	NA|732aa|up_4|NZ_CP047242.1_2515820_2518016_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|520aa|up_3|NZ_CP047242.1_2518120_2519680_-	TIGR02655, Circadian_clock_protein_kinase_KaiC, circadian clock protein KaiC	NA|109aa|up_2|NZ_CP047242.1_2519754_2520081_-	PRK09301, PRK09301, circadian clock protein KaiB; Provisional	NA|103aa|up_1|NZ_CP047242.1_2520186_2520495_-	pfam07688, KaiA, KaiA C-terminal domain	NA|1122aa|up_0|NZ_CP047242.1_2521366_2524732_+	PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional	NA|211aa|down_0|NZ_CP047242.1_2527929_2528562_-	COG3932, COG3932, Uncharacterized ABC-type transport system, permease components [General function prediction only]	NA|292aa|down_1|NZ_CP047242.1_2528683_2529559_-	PRK13057, PRK13057, lipid kinase	NA|289aa|down_2|NZ_CP047242.1_2529978_2530845_-	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D	NA|668aa|down_3|NZ_CP047242.1_2530979_2532983_-	TIGR01184, Nitrate_transport_ATP-binding_protein_NrtC, nitrate transport ATP-binding subunits C and D	NA|280aa|down_4|NZ_CP047242.1_2533064_2533904_-	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein	NA|459aa|down_5|NZ_CP047242.1_2534017_2535394_-	pfam13379, NMT1_2, NMT1-like family	NA|486aa|down_6|NZ_CP047242.1_2535973_2537431_+	pfam02696, UPF0061, Uncharacterized ACR, YdiU/UPF0061 family	NA|1821aa|down_7|NZ_CP047242.1_2538223_2543686_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|331aa|down_8|NZ_CP047242.1_2543682_2544675_+	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]	NA|336aa|down_9|NZ_CP047242.1_2544718_2545726_-	COG4240, COG4240, Predicted kinase [General function prediction only]
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	6	2714250-2714434	7	PILER-CR	no	c2c5_V-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Type V-U5	AGTTTCAACACCCCTCCCGAAGTGGGGCGGGTTGAAAG	38	0	0	NA	NA	V-U5	2	2	TypeV-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|157aa|up_7|NZ_CP047242.1_2702498_2702969_-,c2c5_V-U5|643aa|up_0|NZ_CP047242.1_2711856_2713785_+,NA	NA|168aa|up_9|NZ_CP047242.1_2700547_2701051_+	pfam06527, TniQ, TniQ	NA|355aa|up_8|NZ_CP047242.1_2701433_2702498_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|157aa|up_7|NZ_CP047242.1_2702498_2702969_-	NA	NA|112aa|up_6|NZ_CP047242.1_2703014_2703350_-	cd07344, M48_yhfN_like, Peptidase M48 YhfN-like, a novel minigluzincin	NA|975aa|up_5|NZ_CP047242.1_2703433_2706358_-	TIGR00348, R_protein, type I site-specific deoxyribonuclease, HsdR family	NA|669aa|up_4|NZ_CP047242.1_2706379_2708386_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|455aa|up_3|NZ_CP047242.1_2708403_2709768_-	cd17278, RMtype1_S_LdeBORF1052P-TRD2-CR2, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Lactobacillus delbrueckii subsp	NA|517aa|up_2|NZ_CP047242.1_2709764_2711315_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|151aa|up_1|NZ_CP047242.1_2711334_2711787_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	c2c5_V-U5|643aa|up_0|NZ_CP047242.1_2711856_2713785_+	NA	NA|292aa|down_0|NZ_CP047242.1_2714878_2715754_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|308aa|down_1|NZ_CP047242.1_2715805_2716729_+	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	NA|417aa|down_2|NZ_CP047242.1_2717251_2718502_+	PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated	NA|152aa|down_3|NZ_CP047242.1_2719044_2719500_+	pfam01475, FUR, Ferric uptake regulator family	NA|413aa|down_4|NZ_CP047242.1_2719629_2720868_-	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	NA|1289aa|down_5|NZ_CP047242.1_2720886_2724753_-	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed	NA|677aa|down_6|NZ_CP047242.1_2724837_2726868_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|303aa|down_7|NZ_CP047242.1_2726968_2727877_-	PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional	NA|301aa|down_8|NZ_CP047242.1_2728009_2728912_+	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain	NA|393aa|down_9|NZ_CP047242.1_2729099_2730278_+	PRK03080, PRK03080, phosphoserine transaminase
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	7	2727312-2727404	5	CRISPRCasFinder	no	c2c5_V-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Type V-U5	GCTTCTGGTTCCGATGTAATTTCT	24	0	0	NA	NA	NA	1	1	TypeV-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	c2c5_V-U5|643aa|up_7|NZ_CP047242.1_2711856_2713785_+,NA	NA|517aa|up_9|NZ_CP047242.1_2709764_2711315_-	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|151aa|up_8|NZ_CP047242.1_2711334_2711787_-	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	c2c5_V-U5|643aa|up_7|NZ_CP047242.1_2711856_2713785_+	NA	NA|292aa|up_6|NZ_CP047242.1_2714878_2715754_+	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|308aa|up_5|NZ_CP047242.1_2715805_2716729_+	PRK14619, PRK14619, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional	NA|417aa|up_4|NZ_CP047242.1_2717251_2718502_+	PRK07598, PRK07598, RNA polymerase sigma factor SigC; Validated	NA|152aa|up_3|NZ_CP047242.1_2719044_2719500_+	pfam01475, FUR, Ferric uptake regulator family	NA|413aa|up_2|NZ_CP047242.1_2719629_2720868_-	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane]	NA|1289aa|up_1|NZ_CP047242.1_2720886_2724753_-	PRK05989, cobN, cobaltochelatase subunit CobN; Reviewed	NA|677aa|up_0|NZ_CP047242.1_2724837_2726868_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|301aa|down_0|NZ_CP047242.1_2728009_2728912_+	cd07378, MPP_ACP5, Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain	NA|393aa|down_1|NZ_CP047242.1_2729099_2730278_+	PRK03080, PRK03080, phosphoserine transaminase	NA|451aa|down_2|NZ_CP047242.1_2730901_2732254_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|357aa|down_3|NZ_CP047242.1_2732424_2733495_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|334aa|down_4|NZ_CP047242.1_2733537_2734539_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|373aa|down_5|NZ_CP047242.1_2734949_2736068_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|85aa|down_6|NZ_CP047242.1_2736481_2736736_+	COG4327, COG4327, Predicted membrane protein [Function unknown]	NA|560aa|down_7|NZ_CP047242.1_2736745_2738425_+	TIGR03648, Na_symport_lg, probable sodium:solute symporter, VC_2705 subfamily	NA|281aa|down_8|NZ_CP047242.1_2738493_2739336_-	sd00006, TPR, Tetratricopeptide repeat	NA|223aa|down_9|NZ_CP047242.1_2740090_2740759_-	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	8	2913110-2913292	8	PILER-CR	no	c2c5_V-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Type V-U5	AGTTTCAACGACCATCCCGGCTAGGGGCGGGTTGAAAGATT	41	0	0	NA	NA	V-U5	2	2	TypeV-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA,NA|101aa|down_8|NZ_CP047242.1_2931399_2931702_+	NA|205aa|up_9|NZ_CP047242.1_2901409_2902024_-	pfam13525, YfiO, Outer membrane lipoprotein	NA|910aa|up_8|NZ_CP047242.1_2902037_2904767_-	sd00006, TPR, Tetratricopeptide repeat	NA|149aa|up_7|NZ_CP047242.1_2904766_2905213_-	PRK11198, PRK11198, LysM domain/BON superfamily protein; Provisional	NA|738aa|up_6|NZ_CP047242.1_2905209_2907423_-	cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family	NA|141aa|up_5|NZ_CP047242.1_2907619_2908042_-	COG4270, COG4270, Predicted membrane protein [Function unknown]	NA|164aa|up_4|NZ_CP047242.1_2908258_2908750_-	COG4446, COG4446, Uncharacterized protein conserved in bacteria [Function unknown]	NA|187aa|up_3|NZ_CP047242.1_2908888_2909449_+	pfam06271, RDD, RDD family	NA|65aa|up_2|NZ_CP047242.1_2909493_2909688_+	CHL00104, rpl33, ribosomal protein L33	NA|72aa|up_1|NZ_CP047242.1_2909690_2909906_+	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed	NA|687aa|up_0|NZ_CP047242.1_2910120_2912181_+	COG0557, VacB, Exoribonuclease R [Transcription]	c2c5_V-U5|636aa|down_0|NZ_CP047242.1_2913786_2915694_-	TIGR01766, Putative_transposase_MJ0751, transposase, IS605 OrfB family, central region	NA|1083aa|down_1|NZ_CP047242.1_2916588_2919837_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|1322aa|down_2|NZ_CP047242.1_2919850_2923816_+	NF033451, BREX_2_MTaseX, BREX-2 system adenine-specific DNA-methyltransferase PglX	NA|135aa|down_3|NZ_CP047242.1_2924152_2924557_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|1160aa|down_4|NZ_CP047242.1_2924732_2928212_+	smart00490, HELICc, helicase superfamily c-terminal domain	NA|621aa|down_5|NZ_CP047242.1_2928208_2930071_+	pfam09369, DUF1998, Domain of unknown function (DUF1998)	NA|266aa|down_6|NZ_CP047242.1_2930077_2930875_+	cd09132, PLDc_unchar4, Putative catalytic domain of uncharacterized phospholipase D-like proteins	NA|87aa|down_7|NZ_CP047242.1_2930918_2931179_-	COG3655, COG3655, Predicted transcriptional regulator [Transcription]	NA|101aa|down_8|NZ_CP047242.1_2931399_2931702_+	NA	NA|390aa|down_9|NZ_CP047242.1_2932118_2933288_+	cd00880, Era_like, E
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	9	3385529-3385615	6	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	GGTGCAGAGGTGCAGGGGAGAGA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|163aa|up_7|NZ_CP047242.1_3374492_3374981_+,NA|73aa|up_3|NZ_CP047242.1_3379505_3379724_+,NA|167aa|down_1|NZ_CP047242.1_3387430_3387931_+,NA|69aa|down_3|NZ_CP047242.1_3388904_3389111_+	NA|198aa|up_9|NZ_CP047242.1_3372451_3373045_+	COG4636, Uma2, Endonuclease, Uma2 family (restriction endonuclease fold) [General function prediction only]	NA|348aa|up_8|NZ_CP047242.1_3373078_3374122_+	pfam14903, WG_beta_rep, WG containing repeat	NA|163aa|up_7|NZ_CP047242.1_3374492_3374981_+	NA	NA|254aa|up_6|NZ_CP047242.1_3375098_3375860_+	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|195aa|up_5|NZ_CP047242.1_3376102_3376687_-	TIGR04026, hypothetical_protein, PPOX class probable FMN-dependent enzyme, alr4036 family	NA|766aa|up_4|NZ_CP047242.1_3377081_3379379_+	TIGR02505, RTPR, ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	NA|73aa|up_3|NZ_CP047242.1_3379505_3379724_+	NA	NA|857aa|up_2|NZ_CP047242.1_3379964_3382535_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|397aa|up_1|NZ_CP047242.1_3382601_3383792_+	cd17485, MFS_MFSD3, Major facilitator superfamily domain containing 3 protein	NA|481aa|up_0|NZ_CP047242.1_3384076_3385519_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|338aa|down_0|NZ_CP047242.1_3385757_3386771_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|167aa|down_1|NZ_CP047242.1_3387430_3387931_+	NA	NA|221aa|down_2|NZ_CP047242.1_3388194_3388857_+	sd00006, TPR, Tetratricopeptide repeat	NA|69aa|down_3|NZ_CP047242.1_3388904_3389111_+	NA	NA|95aa|down_4|NZ_CP047242.1_3389629_3389914_+	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins	NA|350aa|down_5|NZ_CP047242.1_3390777_3391827_+	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|382aa|down_6|NZ_CP047242.1_3392033_3393179_+	PRK03343, PRK03343, transaldolase; Validated	NA|510aa|down_7|NZ_CP047242.1_3393321_3394851_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|459aa|down_8|NZ_CP047242.1_3395008_3396385_+	COG3429, COG3429, Glucose-6-P dehydrogenase subunit [Carbohydrate transport and metabolism]	NA|354aa|down_9|NZ_CP047242.1_3396674_3397736_+	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	10	3591675-3591770	7	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	AGGCGATCGCTCACCCTTTTTACTCAAAGTTTC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA,NA|66aa|down_3|NZ_CP047242.1_3594139_3594337_-,NA|456aa|down_9|NZ_CP047242.1_3601281_3602649_-	NA|41aa|up_9|NZ_CP047242.1_3586990_3587113_-	CHL00108, psbJ, photosystem II protein J	NA|41aa|up_8|NZ_CP047242.1_3587182_3587305_-	PRK00753, psbL, photosystem II reaction center L; Provisional	NA|46aa|up_7|NZ_CP047242.1_3587322_3587460_-	PRK02561, psbF, cytochrome b559 subunit beta; Provisional	NA|83aa|up_6|NZ_CP047242.1_3587469_3587718_-	PRK02557, psbE, cytochrome b559 subunit alpha; Provisional	NA|340aa|up_5|NZ_CP047242.1_3587823_3588843_-	PRK13684, PRK13684, photosynthesis system II assembly factor Ycf48	NA|112aa|up_4|NZ_CP047242.1_3589001_3589337_-	COG1773, COG1773, Rubredoxin [Energy production and conversion]	NA|121aa|up_3|NZ_CP047242.1_3589532_3589895_+	CHL00022, ndhC, NADH dehydrogenase subunit 3	NA|246aa|up_2|NZ_CP047242.1_3589885_3590623_+	CHL00023, ndhK, NADH dehydrogenase subunit K	NA|176aa|up_1|NZ_CP047242.1_3590615_3591143_+	PRK12494, PRK12494, NAD(P)H-quinone oxidoreductase subunit J	NA|78aa|up_0|NZ_CP047242.1_3591321_3591555_+	pfam13374, TPR_10, Tetratricopeptide repeat	NA|281aa|down_0|NZ_CP047242.1_3591825_3592668_+	pfam11103, DUF2887, Protein of unknown function (DUF2887)	NA|270aa|down_1|NZ_CP047242.1_3592776_3593586_+	cd05358, GlcDH_SDR_c, glucose 1 dehydrogenase (GlcDH), classical (c) SDRs	NA|177aa|down_2|NZ_CP047242.1_3593612_3594143_+	pfam07176, DUF1400, Alpha/beta hydrolase of unknown function (DUF1400)	NA|66aa|down_3|NZ_CP047242.1_3594139_3594337_-	NA	NA|204aa|down_4|NZ_CP047242.1_3594343_3594955_-	NF033183, colliding_TM, low-complexity tail membrane protein	NA|1039aa|down_5|NZ_CP047242.1_3595146_3598263_-	PRK05306, infB, translation initiation factor IF-2; Validated	NA|90aa|down_6|NZ_CP047242.1_3598755_3599025_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|424aa|down_7|NZ_CP047242.1_3599173_3600445_-	PRK12329, nusA, transcription termination factor NusA	NA|154aa|down_8|NZ_CP047242.1_3600609_3601071_-	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|456aa|down_9|NZ_CP047242.1_3601281_3602649_-	NA
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	11	3672821-3675854	8,4,9	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	GTTTCAATCCCTGATAGGGATTTTAGAGGGTTTTAAC,GTTTCAATCCCTGATAGGGATTTTAGAGGGTTTTAAC,GTTAAAACCCTCTAAAATCCCTATCAGGGATTGAAAC	37,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B	42,42,42	42	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|64aa|up_1|NZ_CP047242.1_3670633_3670825_+,NA|528aa|up_0|NZ_CP047242.1_3671022_3672606_-,NA|431aa|down_0|NZ_CP047242.1_3678090_3679383_-,NA|82aa|down_7|NZ_CP047242.1_3685665_3685911_+	NA|306aa|up_9|NZ_CP047242.1_3661855_3662773_+	PRK02649, ppnK, NAD(+) kinase	NA|229aa|up_8|NZ_CP047242.1_3662855_3663542_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|174aa|up_7|NZ_CP047242.1_3663913_3664435_+	COG1430, COG1430, Uncharacterized conserved protein [Function unknown]	NA|76aa|up_6|NZ_CP047242.1_3664938_3665166_+	pfam11165, DUF2949, Protein of unknown function (DUF2949)	NA|83aa|up_5|NZ_CP047242.1_3665418_3665667_-	pfam17275, DUF5340, Family of unknown function (DUF5340)	NA|297aa|up_4|NZ_CP047242.1_3666011_3666902_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|476aa|up_3|NZ_CP047242.1_3666997_3668425_-	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed	NA|614aa|up_2|NZ_CP047242.1_3668613_3670455_+	COG4715, COG4715, Uncharacterized conserved protein [Function unknown]	NA|64aa|up_1|NZ_CP047242.1_3670633_3670825_+	NA	NA|528aa|up_0|NZ_CP047242.1_3671022_3672606_-	NA	NA|431aa|down_0|NZ_CP047242.1_3678090_3679383_-	NA	NA|491aa|down_1|NZ_CP047242.1_3679541_3681014_-	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|224aa|down_2|NZ_CP047242.1_3681122_3681794_+	pfam12900, Pyridox_ox_2, Pyridoxamine 5'-phosphate oxidase	NA|552aa|down_3|NZ_CP047242.1_3681940_3683596_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|185aa|down_4|NZ_CP047242.1_3683879_3684434_+	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|62aa|down_5|NZ_CP047242.1_3684825_3685011_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	NA|74aa|down_6|NZ_CP047242.1_3685010_3685232_-	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General    function prediction only]	NA|82aa|down_7|NZ_CP047242.1_3685665_3685911_+	NA	NA|1221aa|down_8|NZ_CP047242.1_3686159_3689822_-	TIGR02025, Magnesium-chelatase_subunit_H, magnesium chelatase, H subunit	NA|605aa|down_9|NZ_CP047242.1_3690099_3691914_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	12	3948442-3948522	9	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	ACCAATGATTTGGGATAATTATCTGCGT	28	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA,NA	NA|408aa|up_9|NZ_CP047242.1_3934752_3935976_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|444aa|up_8|NZ_CP047242.1_3936457_3937789_+	cd19920, REC_PA4781-like, phosphoacceptor receiver (REC) domain of cyclic di-GMP phosphodiesterase PA4781 and similar domains	NA|384aa|up_7|NZ_CP047242.1_3938034_3939186_+	COG3287, COG3287, Uncharacterized conserved protein [Function unknown]	NA|343aa|up_6|NZ_CP047242.1_3939201_3940230_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|521aa|up_5|NZ_CP047242.1_3940290_3941853_-	PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit N	NA|511aa|up_4|NZ_CP047242.1_3942157_3943690_-	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC	NA|292aa|up_3|NZ_CP047242.1_3943898_3944774_-	pfam14257, DUF4349, Domain of unknown function (DUF4349)	NA|153aa|up_2|NZ_CP047242.1_3944866_3945325_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|489aa|up_1|NZ_CP047242.1_3945497_3946964_-	COG1982, LdcC, Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]	NA|287aa|up_0|NZ_CP047242.1_3947440_3948301_+	pfam06485, DUF1092, Protein of unknown function (DUF1092)	NA|863aa|down_0|NZ_CP047242.1_3950010_3952599_+	cd01031, EriC, ClC chloride channel EriC	NA|326aa|down_1|NZ_CP047242.1_3952984_3953962_+	pfam05982, Sbt_1, Na+-dependent bicarbonate transporter superfamily	NA|98aa|down_2|NZ_CP047242.1_3953965_3954259_+	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|225aa|down_3|NZ_CP047242.1_3954534_3955209_+	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|457aa|down_4|NZ_CP047242.1_3955386_3956757_-	COG4370, COG4370, Uncharacterized protein conserved in bacteria [Function unknown]	NA|134aa|down_5|NZ_CP047242.1_3957022_3957424_-	COG2335, COG2335, Secreted and surface protein containing fasciclin-like repeats [Cell envelope biogenesis, outer membrane]	NA|473aa|down_6|NZ_CP047242.1_3957546_3958965_-	COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	NA|377aa|down_7|NZ_CP047242.1_3959212_3960343_+	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain	NA|355aa|down_8|NZ_CP047242.1_3960377_3961442_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|344aa|down_9|NZ_CP047242.1_3961806_3962838_+	cd06321, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	13	4002942-4003194	10,5,10	PILER-CR,CRT,CRISPRCasFinder	no	c2c5_V-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Type V-U5	AAGGTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAGG,GGTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG,GTGACAATAGCCCTTCCCGTGTTGAGCGGGTTGAAAG	41,38,37	0	0	NA	NA	V-U5:V-U5:V-U5	2,3,3	3	TypeV-U5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|86aa|up_3|NZ_CP047242.1_3999308_3999566_-,NA|102aa|up_2|NZ_CP047242.1_3999763_4000069_+,c2c5_V-U5|644aa|up_0|NZ_CP047242.1_4000566_4002498_+,NA|238aa|down_7|NZ_CP047242.1_4013881_4014595_-	NA|551aa|up_9|NZ_CP047242.1_3985183_3986836_+	pfam09299, Mu-transpos_C, Mu transposase, C-terminal	NA|276aa|up_8|NZ_CP047242.1_3986845_3987673_+	pfam05621, TniB, Bacterial TniB protein	NA|174aa|up_7|NZ_CP047242.1_3987674_3988196_+	pfam06527, TniQ, TniQ	NA|1173aa|up_6|NZ_CP047242.1_3988502_3992021_+	cd18011, DEXDc_RapA, DEXH-box helicase domain of RapA	NA|793aa|up_5|NZ_CP047242.1_3992277_3994656_+	COG1743, COG1743, Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]	NA|1110aa|up_4|NZ_CP047242.1_3995692_3999022_+	COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|86aa|up_3|NZ_CP047242.1_3999308_3999566_-	NA	NA|102aa|up_2|NZ_CP047242.1_3999763_4000069_+	NA	NA|84aa|up_1|NZ_CP047242.1_4000193_4000445_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	c2c5_V-U5|644aa|up_0|NZ_CP047242.1_4000566_4002498_+	NA	NA|307aa|down_0|NZ_CP047242.1_4004077_4004998_+	PRK00779, PRK00779, ornithine carbamoyltransferase; Provisional	NA|202aa|down_1|NZ_CP047242.1_4005144_4005750_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|493aa|down_2|NZ_CP047242.1_4005861_4007340_+	TIGR04095, type_III_restriction_protein_res_subunit, DNA phosphorothioation system restriction enzyme	NA|691aa|down_3|NZ_CP047242.1_4007837_4009910_+	TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD	NA|189aa|down_4|NZ_CP047242.1_4010071_4010638_+	cd06260, DUF820, Domain of unknown function (DUF820)	NA|154aa|down_5|NZ_CP047242.1_4011364_4011826_+	TIGR04062, hypothetical_protein_CY0110_29519, dnd system-associated protein 4	NA|665aa|down_6|NZ_CP047242.1_4011881_4013876_-	pfam14072, DndB, DNA-sulfur modification-associated	NA|238aa|down_7|NZ_CP047242.1_4013881_4014595_-	NA	NA|533aa|down_8|NZ_CP047242.1_4014642_4016241_-	TIGR03187, hypothetical_protein, DGQHR domain	NA|567aa|down_9|NZ_CP047242.1_4016398_4018099_+	PRK06850, PRK06850, hypothetical protein; Provisional
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	14	5542600-5542672	11	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	TCTACAGATGGTTTATTTGTCGGA	24	1	14	5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648|5542624-5542648	NZ_CP047242.1_1544953-1544929|NZ_CP047242.1_2072086-2072062|NZ_CP047242.1_1559864-1559888|NZ_CP047242.1_4530591-4530615|NZ_CP047242.1_6064831-6064855|NZ_CP047242.1_3073962-3073938|NZ_CP047242.1_5187261-5187237|NZ_CP047242.1_336330-336354|NZ_CP047242.1_3194594-3194618|NZ_CP047242.1_3390069-3390093|NZ_CP047242.1_1113369-1113345|NZ_CP047242.1_4512574-4512550|NZ_CP047242.1_4204752-4204776|NZ_CP047242.1_4234837-4234861	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA,NA|86aa|down_0|NZ_CP047242.1_5542859_5543117_+,NA|73aa|down_2|NZ_CP047242.1_5543869_5544088_+,NA|76aa|down_9|NZ_CP047242.1_5552015_5552243_-	NA|560aa|up_9|NZ_CP047242.1_5533193_5534873_+	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]	NA|216aa|up_8|NZ_CP047242.1_5535038_5535686_+	TIGR04155, hypothetical_protein, PEP-CTERM protein sorting domain, cyanobacterial subclass	NA|313aa|up_7|NZ_CP047242.1_5535811_5536750_-	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family	NA|235aa|up_6|NZ_CP047242.1_5536756_5537461_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|338aa|up_5|NZ_CP047242.1_5537475_5538489_+	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|412aa|up_4|NZ_CP047242.1_5538568_5539804_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|169aa|up_3|NZ_CP047242.1_5539966_5540473_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|66aa|up_2|NZ_CP047242.1_5540474_5540672_-	pfam11387, DUF2795, Protein of unknown function (DUF2795)	NA|396aa|up_1|NZ_CP047242.1_5540970_5542158_+	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|128aa|up_0|NZ_CP047242.1_5542164_5542548_+	pfam00072, Response_reg, Response regulator receiver domain	NA|86aa|down_0|NZ_CP047242.1_5542859_5543117_+	NA	NA|103aa|down_1|NZ_CP047242.1_5543236_5543545_+	pfam11378, DUF3181, Protein of unknown function (DUF3181)	NA|73aa|down_2|NZ_CP047242.1_5543869_5544088_+	NA	NA|157aa|down_3|NZ_CP047242.1_5544167_5544638_-	pfam14108, DUF4281, Domain of unknown function (DUF4281)	NA|347aa|down_4|NZ_CP047242.1_5544735_5545776_-	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW	NA|300aa|down_5|NZ_CP047242.1_5545998_5546898_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|173aa|down_6|NZ_CP047242.1_5546951_5547470_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|432aa|down_7|NZ_CP047242.1_5547572_5548868_+	PRK07380, PRK07380, adenylosuccinate lyase; Provisional	NA|426aa|down_8|NZ_CP047242.1_5549271_5550549_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|76aa|down_9|NZ_CP047242.1_5552015_5552243_-	NA
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	15	5557085-5557192	12	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	ATTGTTTCCATCCCCGTGAGGGGTAAAGGAATTAAAACC	39	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|76aa|up_3|NZ_CP047242.1_5552015_5552243_-,NA|131aa|up_1|NZ_CP047242.1_5555351_5555744_-,NA|285aa|up_0|NZ_CP047242.1_5555926_5556781_-,NA|143aa|down_1|NZ_CP047242.1_5560087_5560516_+	NA|157aa|up_9|NZ_CP047242.1_5544167_5544638_-	pfam14108, DUF4281, Domain of unknown function (DUF4281)	NA|347aa|up_8|NZ_CP047242.1_5544735_5545776_-	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW	NA|300aa|up_7|NZ_CP047242.1_5545998_5546898_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|173aa|up_6|NZ_CP047242.1_5546951_5547470_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|432aa|up_5|NZ_CP047242.1_5547572_5548868_+	PRK07380, PRK07380, adenylosuccinate lyase; Provisional	NA|426aa|up_4|NZ_CP047242.1_5549271_5550549_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|76aa|up_3|NZ_CP047242.1_5552015_5552243_-	NA	NA|784aa|up_2|NZ_CP047242.1_5552634_5554986_+	sd00006, TPR, Tetratricopeptide repeat	NA|131aa|up_1|NZ_CP047242.1_5555351_5555744_-	NA	NA|285aa|up_0|NZ_CP047242.1_5555926_5556781_-	NA	NA|552aa|down_0|NZ_CP047242.1_5557709_5559365_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|143aa|down_1|NZ_CP047242.1_5560087_5560516_+	NA	NA|394aa|down_2|NZ_CP047242.1_5560582_5561764_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|300aa|down_3|NZ_CP047242.1_5562212_5563112_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|243aa|down_4|NZ_CP047242.1_5563108_5563837_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|275aa|down_5|NZ_CP047242.1_5564355_5565180_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|390aa|down_6|NZ_CP047242.1_5565567_5566737_+	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]	NA|672aa|down_7|NZ_CP047242.1_5566802_5568818_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|150aa|down_8|NZ_CP047242.1_5569049_5569499_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|241aa|down_9|NZ_CP047242.1_5569593_5570316_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	16	5559835-5559944	13	CRISPRCasFinder	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	TTTCTCATTTGCTGTAAATGCTTTCT	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|76aa|up_4|NZ_CP047242.1_5552015_5552243_-,NA|131aa|up_2|NZ_CP047242.1_5555351_5555744_-,NA|285aa|up_1|NZ_CP047242.1_5555926_5556781_-,NA|143aa|down_0|NZ_CP047242.1_5560087_5560516_+	NA|347aa|up_9|NZ_CP047242.1_5544735_5545776_-	TIGR02475, Probable_cobalamine_biosynthesis_protein, cobalamin biosynthesis protein CobW	NA|300aa|up_8|NZ_CP047242.1_5545998_5546898_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|173aa|up_7|NZ_CP047242.1_5546951_5547470_+	COG2323, COG2323, Predicted membrane protein [Function unknown]	NA|432aa|up_6|NZ_CP047242.1_5547572_5548868_+	PRK07380, PRK07380, adenylosuccinate lyase; Provisional	NA|426aa|up_5|NZ_CP047242.1_5549271_5550549_-	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins	NA|76aa|up_4|NZ_CP047242.1_5552015_5552243_-	NA	NA|784aa|up_3|NZ_CP047242.1_5552634_5554986_+	sd00006, TPR, Tetratricopeptide repeat	NA|131aa|up_2|NZ_CP047242.1_5555351_5555744_-	NA	NA|285aa|up_1|NZ_CP047242.1_5555926_5556781_-	NA	NA|552aa|up_0|NZ_CP047242.1_5557709_5559365_+	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|143aa|down_0|NZ_CP047242.1_5560087_5560516_+	NA	NA|394aa|down_1|NZ_CP047242.1_5560582_5561764_-	pfam01139, RtcB, tRNA-splicing ligase RtcB	NA|300aa|down_2|NZ_CP047242.1_5562212_5563112_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|243aa|down_3|NZ_CP047242.1_5563108_5563837_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|275aa|down_4|NZ_CP047242.1_5564355_5565180_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|390aa|down_5|NZ_CP047242.1_5565567_5566737_+	COG1208, GCD1, Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]	NA|672aa|down_6|NZ_CP047242.1_5566802_5568818_-	PRK05354, PRK05354, biosynthetic arginine decarboxylase	NA|150aa|down_7|NZ_CP047242.1_5569049_5569499_+	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated	NA|241aa|down_8|NZ_CP047242.1_5569593_5570316_-	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism]	NA|312aa|down_9|NZ_CP047242.1_5570717_5571653_-	pfam14261, DUF4351, Domain of unknown function (DUF4351)
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	17	5646758-5646938	11,14	PILER-CR,CRISPRCasFinder	no	cas6,cas8b3,cas7,cas5	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Unclear	GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCAGG,GTGCTTTAACATTAGATGTCGTTAGGCGTTGAGCA	37,35	0	0	NA	NA	I-A,I-B,II-B:I-A,I-B,II-B	2,2	2	Unclear	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|743aa|up_6|NZ_CP047242.1_5637562_5639791_+,NA|53aa|down_0|NZ_CP047242.1_5647006_5647165_-,NA|77aa|down_1|NZ_CP047242.1_5647194_5647425_-,NA|101aa|down_3|NZ_CP047242.1_5649673_5649976_-	NA|82aa|up_9|NZ_CP047242.1_5634138_5634384_+	CHL00065, psaC, photosystem I subunit VII	NA|634aa|up_8|NZ_CP047242.1_5634686_5636588_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|273aa|up_7|NZ_CP047242.1_5636721_5637540_+	pfam08721, Tn7_Tnp_TnsA_C, TnsA endonuclease C terminal	NA|743aa|up_6|NZ_CP047242.1_5637562_5639791_+	NA	NA|557aa|up_5|NZ_CP047242.1_5639777_5641448_+	pfam13401, AAA_22, AAA domain	NA|317aa|up_4|NZ_CP047242.1_5641455_5642406_+	pfam06527, TniQ, TniQ	cas6|205aa|up_3|NZ_CP047242.1_5642643_5643258_+	TIGR02807, hypothetical_protein_LA_3189, CRISPR-associated protein Cas6, subtype MYXAN	cas8b3|495aa|up_2|NZ_CP047242.1_5643329_5644814_+	cd09713, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c	cas7|325aa|up_1|NZ_CP047242.1_5644872_5645847_+	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas5|211aa|up_0|NZ_CP047242.1_5645848_5646481_+	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|53aa|down_0|NZ_CP047242.1_5647006_5647165_-	NA	NA|77aa|down_1|NZ_CP047242.1_5647194_5647425_-	NA	NA|637aa|down_2|NZ_CP047242.1_5647720_5649631_+	pfam15978, TnsD, Tn7-like transposition protein D	NA|101aa|down_3|NZ_CP047242.1_5649673_5649976_-	NA	NA|98aa|down_4|NZ_CP047242.1_5650108_5650402_-	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|695aa|down_5|NZ_CP047242.1_5650599_5652684_+	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms]	NA|406aa|down_6|NZ_CP047242.1_5652690_5653908_+	cd17512, RMtype1_S_BceB55ORF5615P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Bacillus cereus HuB5-5 S subunit (S	NA|82aa|down_7|NZ_CP047242.1_5653933_5654179_+	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|166aa|down_8|NZ_CP047242.1_5654175_5654673_+	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|1080aa|down_9|NZ_CP047242.1_5654804_5658044_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
GCF_009856605.1_ASM985660v1	NZ_CP047242	Trichormus variabilis 0441 chromosome, complete genome	18	6133805-6136308	12,15,6	PILER-CR,CRISPRCasFinder,CRT	no		WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5	Orphan	GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC,GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC,GTTGCAACACCACATAATCCCTATTAGGGATTGAAAC	37,37,37	0	0	NA	NA	I-D,II-B:I-D,II-B:I-D,II-B	34,34,34	34	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|96aa|up_5|NZ_CP047242.1_6125071_6125359_-,NA|144aa|down_2|NZ_CP047242.1_6138039_6138471_-,NA|266aa|down_4|NZ_CP047242.1_6139365_6140163_+	NA|371aa|up_9|NZ_CP047242.1_6121159_6122272_+	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system	NA|182aa|up_8|NZ_CP047242.1_6122258_6122804_+	COG1257, HMG1, Hydroxymethylglutaryl-CoA reductase [Lipid metabolism]	NA|369aa|up_7|NZ_CP047242.1_6122870_6123977_+	COG2082, CobH, Precorrin isomerase [Coenzyme metabolism]	NA|348aa|up_6|NZ_CP047242.1_6124022_6125066_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|96aa|up_5|NZ_CP047242.1_6125071_6125359_-	NA	NA|126aa|up_4|NZ_CP047242.1_6125773_6126151_+	pfam07100, ASRT, Anabaena sensory rhodopsin transducer	NA|421aa|up_3|NZ_CP047242.1_6126156_6127419_-	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|100aa|up_2|NZ_CP047242.1_6127735_6128035_+	PRK02724, PRK02724, 30S ribosomal protein PSRP-3	NA|561aa|up_1|NZ_CP047242.1_6128157_6129840_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment	NA|1022aa|up_0|NZ_CP047242.1_6130418_6133484_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|304aa|down_0|NZ_CP047242.1_6136397_6137309_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|135aa|down_1|NZ_CP047242.1_6137497_6137902_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|144aa|down_2|NZ_CP047242.1_6138039_6138471_-	NA	NA|185aa|down_3|NZ_CP047242.1_6138600_6139155_-	PRK05800, cobU, adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated	NA|266aa|down_4|NZ_CP047242.1_6139365_6140163_+	NA	NA|314aa|down_5|NZ_CP047242.1_6140312_6141254_+	cd00761, Glyco_tranf_GTA_type, Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold	NA|314aa|down_6|NZ_CP047242.1_6141274_6142216_+	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|188aa|down_7|NZ_CP047242.1_6142250_6142814_+	PRK10502, PRK10502, putative acyl transferase; Provisional	NA|268aa|down_8|NZ_CP047242.1_6142978_6143782_-	pfam06051, DUF928, Domain of Unknown Function (DUF928)	NA|783aa|down_9|NZ_CP047242.1_6143886_6146235_-	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms]
GCF_009856605.1_ASM985660v1	NZ_CP047243	Trichormus variabilis 0441 plasmid unnamed1, complete sequence	1	63552-63720	1	CRISPRCasFinder	no	Cas9_archaeal	RT,Cas9_archaeal,cas14k,Cas14u_CAS-V,cas14j,DEDDh	 Type II-B,Type II-A, or Type II-C?	CCCGAAACACCCCCGAAACACCCC	24	0	0	NA	NA	NA	3	3	TypeII-B,TypeII-A,orTypeII-C?	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|198aa|up_8|NZ_CP047243.1_54169_54763_-,NA|109aa|up_5|NZ_CP047243.1_56522_56849_-,NA|219aa|up_4|NZ_CP047243.1_57321_57978_+,NA|188aa|down_0|NZ_CP047243.1_63789_64353_+,NA|137aa|down_3|NZ_CP047243.1_67475_67886_+,NA|127aa|down_4|NZ_CP047243.1_68070_68451_+,NA|177aa|down_5|NZ_CP047243.1_68527_69058_-,NA|127aa|down_6|NZ_CP047243.1_73088_73469_+,NA|206aa|down_8|NZ_CP047243.1_75123_75741_+	NA|221aa|up_9|NZ_CP047243.1_53494_54157_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|198aa|up_8|NZ_CP047243.1_54169_54763_-	NA	NA|236aa|up_7|NZ_CP047243.1_54762_55470_-	cd05386, TraL, transfer origin protein TraL	NA|341aa|up_6|NZ_CP047243.1_55453_56476_-	cd05386, TraL, transfer origin protein TraL	NA|109aa|up_5|NZ_CP047243.1_56522_56849_-	NA	NA|219aa|up_4|NZ_CP047243.1_57321_57978_+	NA	NA|187aa|up_3|NZ_CP047243.1_58116_58677_-	COG1430, COG1430, Uncharacterized conserved protein [Function unknown]	NA|549aa|up_2|NZ_CP047243.1_58673_60320_-	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]	NA|170aa|up_1|NZ_CP047243.1_60427_60937_-	pfam13154, DUF3991, Protein of unknown function (DUF3991)	NA|357aa|up_0|NZ_CP047243.1_60990_62061_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|188aa|down_0|NZ_CP047243.1_63789_64353_+	NA	NA|400aa|down_1|NZ_CP047243.1_64375_65575_+	cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins	NA|401aa|down_2|NZ_CP047243.1_66271_67474_+	pfam10592, AIPR, AIPR protein	NA|137aa|down_3|NZ_CP047243.1_67475_67886_+	NA	NA|127aa|down_4|NZ_CP047243.1_68070_68451_+	NA	NA|177aa|down_5|NZ_CP047243.1_68527_69058_-	NA	NA|127aa|down_6|NZ_CP047243.1_73088_73469_+	NA	NA|463aa|down_7|NZ_CP047243.1_73605_74994_+	PLN02829, PLN02829, Probable galacturonosyltransferase	NA|206aa|down_8|NZ_CP047243.1_75123_75741_+	NA	NA|317aa|down_9|NZ_CP047243.1_75855_76806_+	TIGR02997, RNA_polymerase_sigma_subunit_sigma70/sigma32, RNA polymerase sigma factor, cyanobacterial RpoD-like family
GCF_009856605.1_ASM985660v1	NZ_CP047244	Trichormus variabilis 0441 plasmid unnamed2, complete sequence	1	83503-83614	1	CRISPRCasFinder	no		cas14j,cas3,cas14k,RT,PD-DExK	Orphan	CGCGCGGTAATCCCGAAGAGACGATGCGTACAGCGGC	37	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,PD-DExK,cas10d,csc2gr7,csc1gr5,2OG_CAS,cas6,cas4,cas1,cas2,csa3,Cas9_archaeal,cas14k,Cas14c_CAS-V-F,cas14j,c2c5_V-U5,DinG,RT,cas8b3,cas7,cas5,Cas14u_CAS-V,DEDDh	NA|185aa|up_2|NZ_CP047244.1_80073_80628_+,NA|140aa|down_5|NZ_CP047244.1_90914_91334_-,NA|392aa|down_7|NZ_CP047244.1_92026_93202_+	NA|280aa|up_9|NZ_CP047244.1_71778_72618_+	cd19138, AKR_YeaE, Escherichia coli YeaE and similar proteins	NA|301aa|up_8|NZ_CP047244.1_72806_73709_+	pfam10938, YfdX, YfdX protein	NA|325aa|up_7|NZ_CP047244.1_74174_75149_+	pfam10938, YfdX, YfdX protein	NA|336aa|up_6|NZ_CP047244.1_75233_76241_+	PRK14299, PRK14299, chaperone protein DnaJ; Provisional	NA|106aa|up_5|NZ_CP047244.1_76237_76555_+	pfam13591, MerR_2, MerR HTH family regulatory protein	NA|874aa|up_4|NZ_CP047244.1_76599_79221_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|187aa|up_3|NZ_CP047244.1_79326_79887_+	COG3247, HdeD, Uncharacterized conserved protein [Function unknown]	NA|185aa|up_2|NZ_CP047244.1_80073_80628_+	NA	NA|281aa|up_1|NZ_CP047244.1_81187_82030_+	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional	NA|331aa|up_0|NZ_CP047244.1_82016_83009_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|387aa|down_0|NZ_CP047244.1_85376_86537_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|199aa|down_1|NZ_CP047244.1_86515_87112_+	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|329aa|down_2|NZ_CP047244.1_87419_88406_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|428aa|down_3|NZ_CP047244.1_88490_89774_-	pfam14239, RRXRR, RRXRR protein	NA|265aa|down_4|NZ_CP047244.1_89981_90776_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|140aa|down_5|NZ_CP047244.1_90914_91334_-	NA	NA|128aa|down_6|NZ_CP047244.1_91407_91791_-	PRK07459, PRK07459, single-stranded DNA-binding protein; Provisional	NA|392aa|down_7|NZ_CP047244.1_92026_93202_+	NA	NA|2362aa|down_8|NZ_CP047244.1_93544_100630_+	COG3899, COG3899, Predicted ATPase [General function prediction only]	NA|210aa|down_9|NZ_CP047244.1_100642_101272_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
