The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	7197297	1318341	1426504	7197297	tail,lysis,holin,tRNA,plate,protease	Pseudomonas_phage(40.35%)	111	NA	NA
WP_162098622.1|1318341_1319157_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	33.0	6.6e-08
WP_009047204.1|1319256_1319661_-	SufE family protein	NA	NA	NA	NA	NA
WP_103330486.1|1319657_1320863_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	37.4	1.2e-71
WP_009047206.1|1320939_1321974_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA	NA
WP_009047207.1|1322008_1322371_-	ArsC family reductase	NA	NA	NA	NA	NA
WP_016705305.1|1322597_1324244_+	Na+/H+ antiporter	NA	NA	NA	NA	NA
WP_009047209.1|1324353_1325553_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA	NA
WP_038630713.1|1325592_1328295_-	[protein-PII] uridylyltransferase	NA	NA	NA	NA	NA
WP_009047211.1|1328342_1329125_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_007924078.1|1329532_1330273_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_009042383.1|1330477_1331344_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_007924076.1|1331552_1332296_+	UMP kinase	NA	NA	NA	NA	NA
WP_009047212.1|1332292_1332850_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_009047213.1|1332866_1333622_+	di-trans,poly-cis-decaprenylcistransferase	NA	R9W0U9	Flavobacterium_phage	38.8	1.0e-18
WP_028681758.1|1333621_1334428_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_124301186.1|1334424_1335615_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_016705310.1|1335667_1337020_+|protease	sigma E protease regulator RseP	protease	NA	NA	NA	NA
WP_009047217.1|1337094_1339482_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA	NA
WP_007924063.1|1339527_1340031_+	OmpH family outer membrane protein	NA	NA	NA	NA	NA
WP_009047218.1|1340034_1341090_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA	NA
WP_007924058.1|1341199_1341640_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_007924057.1|1341636_1342413_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA	NA
WP_164485210.1|1342412_1343546_+	lipid-A-disaccharide synthase	NA	NA	NA	NA	NA
WP_016705311.1|1343557_1344190_+	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	38.9	1.7e-27
WP_009047221.1|1344259_1347784_+	DNA polymerase III subunit alpha	NA	A0A2L1IZ23	Streptomyces_phage	38.0	1.4e-195
WP_038630718.1|1347924_1348872_+	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA	NA
WP_038630719.1|1348991_1350320_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	NA	NA	NA	NA
WP_007924045.1|1350594_1352226_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	53.5	6.9e-158
WP_124303477.1|1352231_1353077_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	42.8	9.4e-50
WP_009047225.1|1353234_1354524_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	59.2	9.0e-137
WP_007924039.1|1354696_1354975_+	cell division protein FtsB	NA	NA	NA	NA	NA
WP_124303479.1|1354971_1355679_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_009047227.1|1355848_1356745_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_007924035.1|1356851_1357964_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.2	8.3e-30
WP_162473255.1|1358046_1358898_+	S-formylglutathione hydrolase	NA	NA	NA	NA	NA
WP_007924033.1|1358950_1359424_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA	NA
WP_009047228.1|1359420_1360479_+|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_009047229.1|1360466_1361216_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	52.6	1.4e-68
WP_172833404.1|1361257_1361893_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	51.2	2.3e-40
WP_007924027.1|1362102_1362936_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A0S2SXL7	Bacillus_phage	33.3	6.3e-06
WP_007924026.1|1363042_1364047_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	35.8	5.0e-34
WP_007924025.1|1364548_1364872_-	ferredoxin family protein	NA	NA	NA	NA	NA
WP_038630722.1|1365014_1367594_-	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	23.5	3.1e-27
WP_164485924.1|1367781_1368516_+	helix-turn-helix transcriptional regulator	NA	B5TK58	Pseudomonas_phage	91.5	4.1e-126
WP_038630724.1|1369071_1369500_+|tail	tail fiber assembly protein	tail	NA	NA	NA	NA
WP_080768771.1|1369663_1369852_+	Com family DNA-binding transcriptional regulator	NA	B5TK59	Pseudomonas_phage	82.9	4.5e-13
WP_009047292.1|1369860_1370442_+	DUF642 domain-containing protein	NA	NA	NA	NA	NA
WP_009047293.1|1370544_1370892_+|holin	pyocin R2, holin	holin	B5TK61	Pseudomonas_phage	87.7	1.0e-50
WP_041985726.1|1371058_1371823_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1W6DX33	Sphingobium_phage	26.3	2.0e-06
WP_081362548.1|1372048_1372573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041985721.1|1372576_1373185_+|plate	phage baseplate assembly protein V	plate	A0A2H4JBW8	uncultured_Caudovirales_phage	59.1	1.8e-47
WP_007924012.1|1373198_1373531_+|plate	phage baseplate protein	plate	A0A2H4JI46	uncultured_Caudovirales_phage	69.1	2.1e-37
WP_124301188.1|1373527_1374523_+|plate	baseplate J/gp47 family protein	plate	A0A2H4JC04	uncultured_Caudovirales_phage	62.3	8.9e-108
WP_124301189.1|1374519_1375254_+|tail	phage tail protein I	tail	A0A2H4JDK0	uncultured_Caudovirales_phage	51.4	3.4e-40
WP_038581744.1|1375250_1375781_+|tail	tail fiber protein	tail	A2I2X8	Vibrio_virus	61.9	3.4e-50
WP_124301190.1|1375907_1376690_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_038581740.1|1376692_1376995_+	hypothetical protein	NA	Q8H9M8	Vibrio_phage	64.6	1.8e-11
WP_041985711.1|1377081_1377303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041985709.1|1377305_1378472_+|tail	tail protein	tail	B0ZSG8	Halomonas_phage	57.5	1.4e-125
WP_038581734.1|1378471_1378978_+|tail	phage major tail tube protein	tail	Q6R4W3	Vibrio_virus	35.7	2.6e-23
WP_016701995.1|1379104_1379716_+|tail	phage tail assembly protein	tail	B0ZSH0	Halomonas_phage	36.4	1.5e-25
WP_124301191.1|1379844_1382052_+|tail	phage tail tape measure protein	tail	A0A2H4JAA5	uncultured_Caudovirales_phage	49.3	7.2e-09
WP_016702001.1|1382051_1382435_+|tail	phage tail protein	tail	A0A2H4JAC8	uncultured_Caudovirales_phage	59.8	4.0e-40
WP_009042420.1|1382427_1382640_+|tail	tail protein X	tail	A0A2H4JGD9	uncultured_Caudovirales_phage	61.4	6.9e-18
WP_016702002.1|1382649_1383666_+	hypothetical protein	NA	A0A2H4JH05	uncultured_Caudovirales_phage	56.6	1.0e-106
WP_124301192.1|1383808_1384393_+	hypothetical protein	NA	B5TK65	Pseudomonas_phage	72.5	3.1e-76
WP_007923975.1|1384389_1384572_+	DUF2635 domain-containing protein	NA	B5TK66	Pseudomonas_phage	93.3	6.5e-25
WP_038630744.1|1384571_1386068_+|tail	phage tail sheath subtilisin-like domain-containing protein	tail	B5TK67	Pseudomonas_phage	91.0	2.0e-257
WP_007923973.1|1386134_1386482_+|tail	phage tail tube protein	tail	B5TK68	Pseudomonas_phage	93.9	2.9e-58
WP_007923972.1|1386478_1386775_+|tail	phage tail assembly protein	tail	B5TK69	Pseudomonas_phage	94.9	2.3e-43
WP_124301193.1|1386905_1388981_+|tail	phage tail protein	tail	B5TK70	Pseudomonas_phage	48.2	1.8e-38
WP_016702007.1|1388967_1390206_+	DNA circularization N-terminal domain-containing protein	NA	B5TK71	Pseudomonas_phage	75.7	5.7e-181
WP_009047313.1|1390209_1391250_+	hypothetical protein	NA	B5TK72	Pseudomonas_phage	82.7	3.8e-162
WP_009047314.1|1391366_1391876_+|plate	phage baseplate assembly protein	plate	B5TK73	Pseudomonas_phage	88.8	2.2e-78
WP_009047315.1|1391875_1392274_+	phage GP46 family protein	NA	B5TK74	Pseudomonas_phage	89.4	1.7e-65
WP_038630748.1|1392263_1393304_+|plate	baseplate J/gp47 family protein	plate	B5TK75	Pseudomonas_phage	87.3	3.0e-167
WP_053268352.1|1393291_1393891_+	DUF2313 domain-containing protein	NA	B5TK76	Pseudomonas_phage	91.0	2.5e-105
WP_124301194.1|1393902_1394757_+	hypothetical protein	NA	B5TK77	Pseudomonas_phage	76.4	1.5e-23
WP_124301195.1|1394761_1395403_+	hypothetical protein	NA	B5TK78	Pseudomonas_phage	51.9	1.4e-37
WP_038630754.1|1395534_1396455_+	hypothetical protein	NA	B5TK77	Pseudomonas_phage	61.1	7.4e-24
WP_124301196.1|1396454_1396934_+	hypothetical protein	NA	A0A291LAV4	Bordetella_phage	52.1	1.3e-11
WP_124344844.1|1397093_1397996_+|tail	phage tail protein	tail	B5TK81	Pseudomonas_phage	37.6	2.4e-35
WP_124301198.1|1398005_1398476_+|tail	phage tail protein	tail	Q9ZXK5	Pseudomonas_virus	47.3	6.6e-21
WP_080710484.1|1398547_1399288_+	hypothetical protein	NA	B5TK77	Pseudomonas_phage	65.8	2.1e-21
WP_051673120.1|1399290_1399722_+	hypothetical protein	NA	Q9ZXK5	Pseudomonas_virus	38.4	2.2e-23
WP_023969836.1|1399767_1400331_+	glycoside hydrolase family 19 protein	NA	B5TK83	Pseudomonas_phage	83.3	3.7e-87
WP_038630760.1|1400312_1400849_+|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	71.3	6.3e-60
WP_023969838.1|1400931_1401432_+	CinA family protein	NA	B5TK85	Pseudomonas_phage	86.1	1.0e-72
WP_007923942.1|1401515_1402568_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	60.9	4.4e-113
WP_009047326.1|1402576_1403044_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_016702021.1|1403089_1404205_-	TIGR00730 family Rossman fold protein	NA	NA	NA	NA	NA
WP_009047328.1|1404688_1404883_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007923938.1|1404884_1405307_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA	NA
WP_016702022.1|1405496_1406207_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_009047330.1|1406541_1407192_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_009047331.1|1407268_1407631_+	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_009047332.1|1407627_1408554_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009047333.1|1408687_1409467_+	ferredoxin--NADP reductase	NA	NA	NA	NA	NA
WP_038630763.1|1409539_1410235_-|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	tRNA	NA	NA	NA	NA
WP_038630765.1|1410321_1411092_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_009047336.1|1411225_1411687_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	51.3	8.5e-37
WP_009047337.1|1411753_1412464_-	RNA-binding protein S4	NA	NA	NA	NA	NA
WP_009047338.1|1412546_1413020_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_016702026.1|1413126_1414464_-	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA	NA
WP_009047341.1|1414795_1416697_+	potassium transporter Kup	NA	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	34.8	4.8e-78
WP_016702028.1|1416896_1417172_-	DUF3077 domain-containing protein	NA	NA	NA	NA	NA
WP_038581682.1|1417669_1418965_-	virulence factor family protein	NA	NA	NA	NA	NA
WP_009047343.1|1418964_1421613_-	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA	NA
WP_124301199.1|1422551_1423616_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_038630767.1|1423817_1424771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124301200.1|1424788_1426504_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
>prophage 2
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	7197297	2273470	2357060	7197297	tail,portal,holin,tRNA,head,integrase,plate,protease,capsid,terminase	uncultured_Caudovirales_phage(63.89%)	82	2270643:2270659	2302827:2302843
2270643:2270659	attL	GATAATCGATGACGACG	NA	NA	NA	NA
WP_124344873.1|2273470_2274490_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_124344874.1|2274592_2275690_+|integrase	site-specific integrase	integrase	L7TP61	Pseudomonas_virus	73.8	4.3e-156
WP_124334366.1|2275967_2276417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124334367.1|2276462_2276735_-	pyocin activator PrtN family protein	NA	A0A2K8HN48	Pseudomonas_phage	60.7	5.9e-22
WP_124344876.1|2276731_2278888_-	DNA cytosine methyltransferase	NA	Q5QF27	Pseudomonas_virus	60.2	1.4e-254
WP_124344877.1|2280088_2280310_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124344878.1|2280306_2280711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124344879.1|2280759_2281077_-	pyocin activator PrtN family protein	NA	NA	NA	NA	NA
WP_124344880.1|2281235_2281520_-	phage antirepressor KilAC domain-containing protein	NA	NA	NA	NA	NA
WP_124344881.1|2281530_2282121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_164487390.1|2282117_2282294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_124344882.1|2282461_2283787_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124344883.1|2283851_2284577_-	peptidase S24	NA	A8CGC0	Salmonella_phage	37.9	6.0e-29
WP_124344884.1|2284655_2284916_+	hypothetical protein	NA	A0A0D4DBS7	Acinetobacter_phage	44.7	7.2e-09
WP_164487391.1|2285249_2285768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124344886.1|2285760_2285988_+	TraR/DksA family transcriptional regulator	NA	A2I309	Vibrio_virus	39.5	3.2e-05
WP_124344887.1|2285977_2288194_+	conjugal transfer protein TraC	NA	A0A2D1GN57	Marinobacter_phage	47.1	3.2e-190
WP_124344888.1|2288186_2288549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124344889.1|2289067_2289412_+|holin	pyocin R2, holin	holin	A0A2H4J893	uncultured_Caudovirales_phage	82.4	1.4e-44
WP_124344890.1|2289557_2290157_+|terminase	terminase small subunit	terminase	A0A2H4JG15	uncultured_Caudovirales_phage	67.4	2.9e-61
WP_124344891.1|2290161_2292183_+|terminase	phage terminase large subunit family protein	terminase	A0A2H4J898	uncultured_Caudovirales_phage	83.9	0.0e+00
WP_124302631.1|2292184_2292391_+	hypothetical protein	NA	A0A2H4JA19	uncultured_Caudovirales_phage	72.1	2.2e-21
WP_124344892.1|2292390_2293872_+|portal	phage portal protein	portal	A0A2H4JFL5	uncultured_Caudovirales_phage	84.4	5.7e-244
WP_124344893.1|2293868_2295014_+|protease	Clp protease ClpP	protease	A0A2H4JDI2	uncultured_Caudovirales_phage	70.6	2.4e-141
WP_124344894.1|2295010_2295355_+|head	head decoration protein	head	A0A2H4JF15	uncultured_Caudovirales_phage	86.0	1.5e-46
WP_124344895.1|2295518_2296514_+|capsid	major capsid protein	capsid	A0A2H4J890	uncultured_Caudovirales_phage	87.3	8.5e-167
WP_124344896.1|2296516_2296831_+	hypothetical protein	NA	A0A2H4J879	uncultured_Caudovirales_phage	58.7	3.7e-28
WP_124344897.1|2296827_2297490_+	hypothetical protein	NA	A0A2H4JBV1	uncultured_Caudovirales_phage	63.3	4.0e-72
WP_124344898.1|2297482_2298013_+	hypothetical protein	NA	A0A2H4J881	uncultured_Caudovirales_phage	55.2	2.4e-43
WP_124344899.1|2298009_2298591_+|plate	phage baseplate assembly protein V	plate	A0A2H4JG06	uncultured_Caudovirales_phage	65.1	5.1e-55
WP_124344900.1|2298634_2298850_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009047523.1|2298852_2299179_+	GPW/gp25 family protein	NA	A0A2H4JA09	uncultured_Caudovirales_phage	65.1	6.2e-34
WP_124344901.1|2299175_2300057_+|plate	baseplate J/gp47 family protein	plate	A0A2H4JFK9	uncultured_Caudovirales_phage	69.3	7.6e-111
WP_038630873.1|2300058_2300667_+|tail	phage tail protein I	tail	A0A2H4JDH5	uncultured_Caudovirales_phage	72.2	1.4e-79
WP_159298932.1|2300659_2302219_+|tail	phage tail protein	tail	A0A077K818	Ralstonia_phage	53.7	4.4e-69
WP_124303961.1|2302230_2302662_+|tail	phage tail protein	tail	Q9ZXK5	Pseudomonas_virus	46.8	5.0e-23
WP_124303960.1|2302759_2303926_+|tail	phage tail sheath family protein	tail	A0A2H4J869	uncultured_Caudovirales_phage	81.8	2.9e-182
2302827:2302843	attR	CGTCGTCATCGATTATC	NA	NA	NA	NA
WP_124303959.1|2303938_2304448_+|tail	phage major tail tube protein	tail	A0A2H4JBU0	uncultured_Caudovirales_phage	73.1	4.3e-66
WP_075118901.1|2304475_2304772_+|tail	phage tail assembly protein	tail	A0A2H4J873	uncultured_Caudovirales_phage	57.4	2.7e-20
WP_124344902.1|2304903_2307444_+|tail	phage tail tape measure protein	tail	A0A2H4JG00	uncultured_Caudovirales_phage	37.8	2.8e-81
WP_124303957.1|2307453_2308299_+|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	58.2	6.6e-88
WP_039967809.1|2308273_2308480_+|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	68.7	7.1e-20
WP_124303956.1|2308537_2309590_+	late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	74.9	9.3e-148
WP_124303955.1|2309613_2310165_+	glycoside hydrolase family 19 protein	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	68.7	5.5e-67
WP_124344903.1|2310435_2310660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159298933.1|2310709_2311237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_159298934.1|2312084_2313215_+	DUF262 domain-containing protein	NA	A0A0R6PKN1	Moraxella_phage	28.0	4.2e-21
WP_159298935.1|2313216_2314023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124344908.1|2314886_2315549_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038631251.1|2316274_2316913_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_038631253.1|2317007_2317862_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038631255.1|2317914_2318403_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110177236.1|2318660_2320223_+	GGDEF domain-containing protein	NA	NA	NA	NA	NA
WP_110177237.1|2320226_2320817_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_101282064.1|2321004_2321841_+	arylamine N-acetyltransferase	NA	NA	NA	NA	NA
WP_009048082.1|2321853_2322276_-	DUF4952 domain-containing protein	NA	NA	NA	NA	NA
WP_009048083.1|2322337_2322757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009048084.1|2322996_2324535_+	purine permease	NA	NA	NA	NA	NA
WP_009048085.1|2324590_2325748_-	MFS transporter	NA	NA	NA	NA	NA
WP_053268595.1|2326656_2326890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023968605.1|2326896_2327091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038631265.1|2327225_2328422_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_007923725.1|2328757_2330773_+	excinuclease ABC subunit B	NA	NA	NA	NA	NA
WP_007922014.1|2331013_2332495_+|tRNA	glutamate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_009048089.1|2333428_2333968_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_038631269.1|2333997_2334831_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_009048091.1|2334879_2335317_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_009048092.1|2335435_2336395_+|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_007922004.1|2336516_2336963_+	Hsp20 family protein	NA	A0A1D8KN82	Synechococcus_phage	37.0	2.9e-18
WP_038631271.1|2337148_2337847_+	DUF1266 domain-containing protein	NA	NA	NA	NA	NA
WP_124301283.1|2337843_2340528_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_038631275.1|2340524_2342216_-	molecular chaperone HscC	NA	M4R062	Micromonas_pusilla_virus	38.9	1.1e-78
WP_038631277.1|2342324_2345603_-	EAL domain-containing protein	NA	A0A127AWB9	Bacillus_phage	31.2	3.8e-14
WP_124301284.1|2345684_2346575_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_009043027.1|2346720_2348139_+	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA	NA
WP_009048098.1|2348149_2348794_+	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA	NA
WP_053268603.1|2349022_2350105_+	3-isopropylmalate dehydrogenase	NA	NA	NA	NA	NA
WP_007921989.1|2350159_2351272_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_009048100.1|2351456_2352467_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_124301285.1|2352669_2355267_+	FimV family protein	NA	NA	NA	NA	NA
WP_016704911.1|2355345_2356005_-	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_038631281.1|2356235_2357060_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
>prophage 3
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	7197297	3933888	3976485	7197297	transposase,tail,integrase,lysis	uncultured_Caudovirales_phage(28.57%)	56	3931983:3931998	3937612:3937627
3931983:3931998	attL	ACGCTTGCCCTTGAAC	NA	NA	NA	NA
WP_038632844.1|3933888_3934827_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_103331553.1|3935006_3936041_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_124345034.1|3936037_3937396_-	glutathione-disulfide reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	28.3	1.7e-48
WP_009049342.1|3937527_3938367_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	46.8	3.9e-64
3937612:3937627	attR	ACGCTTGCCCTTGAAC	NA	NA	NA	NA
WP_016702449.1|3938660_3938849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007921741.1|3939004_3939286_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007921740.1|3939298_3939529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038632853.1|3939597_3940521_-	c-type cytochrome	NA	NA	NA	NA	NA
WP_038636667.1|3940517_3941189_-	cytochrome c4	NA	NA	NA	NA	NA
WP_009049346.1|3941373_3941724_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007921735.1|3941900_3942203_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_007921734.1|3942237_3942408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124345035.1|3942510_3943227_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA	NA
WP_124345036.1|3943216_3943891_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA	NA
WP_101282644.1|3943978_3945052_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	51.1	6.0e-17
WP_009049350.1|3945015_3945504_-	GyrI-like domain-containing protein	NA	NA	NA	NA	NA
WP_124313697.1|3945553_3946537_-	oxidoreductase	NA	NA	NA	NA	NA
WP_124313698.1|3946864_3947929_+	nitronate monooxygenase	NA	NA	NA	NA	NA
WP_164486786.1|3948147_3948870_+	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_009049354.1|3948870_3949551_+	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_038632869.1|3949554_3950643_+	molybdenum ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.7	4.8e-22
WP_124313700.1|3950905_3952546_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	24.7	2.2e-23
WP_009049357.1|3952616_3952826_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009049358.1|3953069_3953390_-	YbjQ family protein	NA	NA	NA	NA	NA
WP_124313701.1|3953600_3953927_+	isochorismate lyase	NA	NA	NA	NA	NA
WP_016704205.1|3953990_3954191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009049361.1|3954305_3954509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_009049362.1|3954915_3955275_+	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA	NA
WP_124301723.1|3955509_3956715_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	53.7	3.3e-109
WP_103331776.1|3957039_3957552_-	type 1 fimbrial protein	NA	NA	NA	NA	NA
WP_009049364.1|3957976_3958408_-	RcnB family protein	NA	NA	NA	NA	NA
WP_124301722.1|3958523_3958997_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016703118.1|3959463_3959871_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115344067.1|3960018_3960207_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_038632879.1|3960127_3960445_+	hypothetical protein	NA	NA	NA	NA	NA
WP_009049368.1|3960746_3961076_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080710562.1|3961246_3961675_+	N-acetyltransferase	NA	A0A1X9I6I8	Streptococcus_phage	34.8	1.0e-20
WP_124301723.1|3961724_3962930_-|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	53.7	3.3e-109
WP_038632885.1|3963095_3963482_-	DUF5329 domain-containing protein	NA	NA	NA	NA	NA
WP_124345037.1|3963550_3964006_-	hypothetical protein	NA	NA	NA	NA	NA
WP_174248204.1|3964096_3964489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_007921689.1|3964804_3964954_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038578458.1|3965147_3965384_-	YceK/YidQ family lipoprotein	NA	NA	NA	NA	NA
WP_028682452.1|3967197_3967494_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124299702.1|3968770_3969121_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124315155.1|3969481_3970273_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_124315156.1|3970556_3971102_+	PAAR domain-containing protein	NA	NA	NA	NA	NA
WP_124340311.1|3971112_3971895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_135006675.1|3971879_3972248_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124315159.1|3972275_3972512_+	hypothetical protein	NA	NA	NA	NA	NA
WP_124315160.1|3972577_3973372_-	DNA adenine methylase	NA	C7BGE1	Burkholderia_phage	66.5	1.5e-102
WP_124315161.1|3973523_3974066_-|lysis	lysis protein	lysis	B5TK84	Pseudomonas_phage	47.8	6.5e-28
WP_159298961.1|3974065_3974617_-	glycoside hydrolase family 19 protein	NA	A0A2H4JHX4	uncultured_Caudovirales_phage	68.1	7.2e-67
WP_159298962.1|3974640_3975693_-	late control protein	NA	A0A2H4JBF6	uncultured_Caudovirales_phage	74.9	3.2e-148
WP_039967809.1|3975749_3975956_-|tail	tail protein X	tail	A0A2H4J9Z9	uncultured_Caudovirales_phage	68.7	7.1e-20
WP_159299221.1|3975930_3976485_-|tail	phage tail protein	tail	A0A2H4J875	uncultured_Caudovirales_phage	63.9	8.0e-66
>prophage 4
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	7197297	4434722	4440981	7197297	tRNA	uncultured_Caudovirales_phage(83.33%)	8	NA	NA
WP_009049761.1|4434722_4435115_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	84.6	6.7e-59
WP_009049762.1|4435118_4435481_+	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	75.0	1.9e-44
WP_009049763.1|4435480_4435780_+	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	69.7	1.1e-32
WP_016701877.1|4435776_4436112_+	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	82.0	1.9e-46
WP_038633620.1|4436108_4437110_+	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	84.1	1.8e-164
WP_038633623.1|4437199_4438207_+	glutathione S-transferase family protein	NA	NA	NA	NA	NA
WP_038633625.1|4438305_4439700_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA	NA
WP_009049768.1|4439700_4440981_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	55.1	2.1e-101
>prophage 6
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	7197297	6040614	6050819	7197297	tail,integrase	Pseudomonas_phage(77.78%)	16	6033591:6033606	6056655:6056670
6033591:6033606	attL	GCGACCTGACCCAGGC	NA	NA	NA	NA
WP_159299134.1|6040614_6041856_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B0VMI6	Pseudomonas_phage	37.7	2.6e-64
WP_159299135.1|6042034_6042577_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159299136.1|6042681_6042951_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_159299137.1|6042950_6043250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159299138.1|6043246_6043930_+	KilA-N domain-containing protein	NA	H6WRZ8	Salmonella_phage	58.4	9.3e-40
WP_146218544.1|6043926_6044409_+	hypothetical protein	NA	A0A1B0VP73	Pseudomonas_phage	67.1	2.1e-46
WP_159299139.1|6044405_6044717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159299140.1|6044713_6044959_+	hypothetical protein	NA	NA	NA	NA	NA
WP_110176164.1|6044955_6045285_+	hypothetical protein	NA	NA	NA	NA	NA
WP_174248227.1|6045567_6045795_+	hypothetical protein	NA	A0A1B0VRK9	Pseudomonas_phage	85.3	2.6e-31
WP_110176165.1|6045791_6046673_+	toprim domain-containing protein	NA	A0A1B0VML8	Pseudomonas_phage	88.7	2.6e-143
WP_159299141.1|6046659_6048453_+	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	90.0	0.0e+00
WP_159299142.1|6048449_6048812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_159299143.1|6049119_6049725_+	hypothetical protein	NA	A0A1B0VMK2	Pseudomonas_phage	53.2	5.0e-53
WP_159299144.1|6049837_6050218_+	hypothetical protein	NA	A0A1B0VML3	Pseudomonas_phage	63.1	1.0e-35
WP_135006935.1|6050228_6050819_+|tail	tail assembly protein	tail	A0A2H4J1H0	uncultured_Caudovirales_phage	62.5	2.2e-58
6056655:6056670	attR	GCGACCTGACCCAGGC	NA	NA	NA	NA
>prophage 7
NZ_CP019399	Pseudomonas chlororaphis strain R47 chromosome, complete genome	7197297	6581053	6641649	7197297	transposase,protease,holin	Burkholderia_phage(25.0%)	54	NA	NA
WP_009046547.1|6581053_6582259_+|transposase	ISL3 family transposase	transposase	A4PE56	Ralstonia_virus	53.7	4.4e-109
WP_009045922.1|6582333_6582780_-	response regulator	NA	NA	NA	NA	NA
WP_101283763.1|6583033_6584974_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_041984830.1|6584970_6585678_+	3'-5' exonuclease	NA	NA	NA	NA	NA
WP_041984832.1|6585952_6586471_+	RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_124302214.1|6586467_6587454_+	FecR family protein	NA	NA	NA	NA	NA
WP_124302215.1|6587684_6590114_+	TonB-dependent siderophore receptor	NA	NA	NA	NA	NA
WP_081359566.1|6590178_6591312_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_009045929.1|6591308_6591497_+	hypothetical protein	NA	NA	NA	NA	NA
WP_028684196.1|6591474_6591897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_110175316.1|6592008_6592638_+	glutathione S-transferase	NA	NA	NA	NA	NA
WP_101283779.1|6592844_6594221_-	cell envelope integrity protein CreD	NA	NA	NA	NA	NA
WP_124302216.1|6594501_6595923_-	two-component system sensor histidine kinase CreC	NA	NA	NA	NA	NA
WP_041984848.1|6595922_6596603_-	two-component system response regulator CreB	NA	W8CYM9	Bacillus_phage	36.1	1.5e-29
WP_007926027.1|6596672_6597173_-|protease	ATP-dependent zinc protease	protease	NA	NA	NA	NA
WP_124345211.1|6597482_6598370_+	acyltransferase	NA	NA	NA	NA	NA
WP_009051218.1|6598370_6598943_-	DUF2780 domain-containing protein	NA	NA	NA	NA	NA
WP_009045939.1|6599313_6600513_-	formaldehyde dehydrogenase, glutathione-independent	NA	A0A2K9L7I1	Tupanvirus	29.3	6.5e-12
WP_009051219.1|6600694_6601552_-	formyltetrahydrofolate deformylase	NA	NA	NA	NA	NA
WP_009051220.1|6601712_6602345_-	sarcosine oxidase subunit gamma family protein	NA	NA	NA	NA	NA
WP_038636201.1|6602478_6605496_-	sarcosine oxidase subunit alpha	NA	NA	NA	NA	NA
WP_009051222.1|6605492_6605822_-	sarcosine oxidase subunit delta	NA	NA	NA	NA	NA
WP_009051223.1|6605978_6607229_-	sarcosine oxidase subunit beta family protein	NA	NA	NA	NA	NA
WP_009051224.1|6607252_6608506_-	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.9e-99
WP_124345212.1|6608949_6609693_-	conjugal transfer protein TraX	NA	NA	NA	NA	NA
WP_009051226.1|6609917_6610958_+	low specificity L-threonine aldolase	NA	NA	NA	NA	NA
WP_124302219.1|6611125_6612571_+	cytosine permease	NA	NA	NA	NA	NA
WP_124302220.1|6612567_6613392_+	carbon-nitrogen hydrolase	NA	M1HUK8	Acanthocystis_turfacea_Chlorella_virus	36.7	1.5e-20
WP_124302221.1|6613529_6614354_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_009051230.1|6614482_6615583_-	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA	NA
WP_009051232.1|6615867_6617163_+	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA	NA
WP_038636189.1|6618005_6618776_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA	NA
WP_124302222.1|6618791_6620012_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA	NA
WP_038636183.1|6620011_6621961_-	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA	NA
WP_009051236.1|6622124_6624185_-	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA	NA
WP_003228980.1|6624200_6624731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_007926352.1|6624893_6625871_-	membrane dipeptidase	NA	NA	NA	NA	NA
WP_009051237.1|6626098_6626500_+	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_009051238.1|6626730_6626985_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5NR91	Burkholderia_phage	64.3	1.7e-23
WP_050899134.1|6626923_6627292_+	helix-turn-helix transcriptional regulator	NA	A0A1S5NNJ5	Burkholderia_phage	70.1	5.0e-32
WP_038636180.1|6627325_6627742_+	DUF3010 family protein	NA	NA	NA	NA	NA
WP_016704212.1|6627840_6628788_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_016704214.1|6628981_6629926_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_009051243.1|6629999_6630887_+	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA	NA
WP_038636178.1|6631085_6632051_+	L-carnitine dehydrogenase	NA	NA	NA	NA	NA
WP_009051245.1|6632199_6632676_+	thioesterase family protein	NA	NA	NA	NA	NA
WP_038636176.1|6632841_6634005_+	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA	NA
WP_007925996.1|6634362_6634623_+	hypothetical protein	NA	NA	NA	NA	NA
WP_038636173.1|6634685_6635132_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_009045963.1|6635132_6636227_-	GlxA family transcriptional regulator	NA	NA	NA	NA	NA
WP_009051249.1|6636798_6638175_-	L-serine ammonia-lyase	NA	NA	NA	NA	NA
WP_009051250.1|6638601_6639558_+|holin	choline ABC transporter substrate-binding protein	holin	NA	NA	NA	NA
WP_007925985.1|6639628_6640474_+|holin	choline ABC transporter permease subunit	holin	NA	NA	NA	NA
WP_016704219.1|6640470_6641649_+|holin	choline ABC transporter ATP-binding protein	holin	G3M9Y6	Bacillus_virus	37.6	5.9e-26
