assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009834475.1_ASM983447v1	NZ_CP013210	Empedobacter brevis strain BCLYD2 chromosome, complete genome	1	882529-882656	1	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	Orphan	CGCGAGATGGAGCAGTAGGTAGCTCGTCGGGCTCATAACCCGAAGGTCA	49	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	NA|162aa|up_5|NZ_CP013210.1_876260_876746_+,NA|194aa|up_4|NZ_CP013210.1_876773_877355_+,NA|385aa|down_3|NZ_CP013210.1_885676_886831_+,NA|305aa|down_5|NZ_CP013210.1_887857_888772_-	NA|360aa|up_9|NZ_CP013210.1_872932_874012_+	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein	NA|302aa|up_8|NZ_CP013210.1_874046_874952_-	COG2962, RarD, Predicted permeases [General function prediction only]	NA|147aa|up_7|NZ_CP013210.1_875027_875468_+	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|249aa|up_6|NZ_CP013210.1_875464_876211_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|162aa|up_5|NZ_CP013210.1_876260_876746_+	NA	NA|194aa|up_4|NZ_CP013210.1_876773_877355_+	NA	NA|463aa|up_3|NZ_CP013210.1_877620_879009_+	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	NA|459aa|up_2|NZ_CP013210.1_879052_880429_-	PRK13238, tnaA, tryptophanase	NA|138aa|up_1|NZ_CP013210.1_880548_880962_-	cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT)	NA|384aa|up_0|NZ_CP013210.1_881307_882459_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|212aa|down_0|NZ_CP013210.1_882763_883399_+	pfam05076, SUFU, Suppressor of fused protein (SUFU)	NA|119aa|down_1|NZ_CP013210.1_883634_883991_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|476aa|down_2|NZ_CP013210.1_884059_885487_-	PRK10238, PRK10238, aromatic amino acid transporter AroP	NA|385aa|down_3|NZ_CP013210.1_885676_886831_+	NA	NA|301aa|down_4|NZ_CP013210.1_886917_887820_+	COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism]	NA|305aa|down_5|NZ_CP013210.1_887857_888772_-	NA	NA|395aa|down_6|NZ_CP013210.1_889375_890560_-	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated	NA|224aa|down_7|NZ_CP013210.1_890572_891244_-	cd00405, PRAI, Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)	NA|262aa|down_8|NZ_CP013210.1_891240_892026_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|329aa|down_9|NZ_CP013210.1_892022_893009_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional
GCF_009834475.1_ASM983447v1	NZ_CP013210	Empedobacter brevis strain BCLYD2 chromosome, complete genome	2	1186249-1186526	1	CRT	no		DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	Orphan	GGTTGTCCAGATACAGATGGTGACGGAAT	29	0	0	NA	NA	NA	3	3	Orphan	DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	NA,NA|472aa|down_4|NZ_CP013210.1_1193036_1194452_+,NA|140aa|down_8|NZ_CP013210.1_1197567_1197987_-,NA|171aa|down_9|NZ_CP013210.1_1198035_1198548_-	NA|149aa|up_9|NZ_CP013210.1_1174994_1175441_-	TIGR04127, conserved_hypothetical_protein, exosortase F-associated protein	NA|181aa|up_8|NZ_CP013210.1_1175430_1175973_-	TIGR04128, hypothetical_protein_HMPREF0204_10576, exosortase family protein XrtF	NA|149aa|up_7|NZ_CP013210.1_1176069_1176516_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|219aa|up_6|NZ_CP013210.1_1176522_1177179_+	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|648aa|up_5|NZ_CP013210.1_1177333_1179277_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|739aa|up_4|NZ_CP013210.1_1179374_1181591_-	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	NA|241aa|up_3|NZ_CP013210.1_1181750_1182473_-	cd17532, REC_LytTR_AlgR-like, phosphoacceptor receiver (REC) domain of LytTR/AlgR family response regulators similar to AlgR	NA|253aa|up_2|NZ_CP013210.1_1182441_1183200_-	pfam06580, His_kinase, Histidine kinase	NA|541aa|up_1|NZ_CP013210.1_1183293_1184916_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|151aa|up_0|NZ_CP013210.1_1184982_1185435_+	pfam01668, SmpB, SmpB protein	NA|544aa|down_0|NZ_CP013210.1_1187059_1188691_-	COG0661, AarF, Predicted unusual protein kinase [General function prediction only]	NA|609aa|down_1|NZ_CP013210.1_1188934_1190761_+	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed	NA|227aa|down_2|NZ_CP013210.1_1190959_1191640_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|422aa|down_3|NZ_CP013210.1_1191640_1192906_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|472aa|down_4|NZ_CP013210.1_1193036_1194452_+	NA	NA|433aa|down_5|NZ_CP013210.1_1194494_1195793_+	cd17367, MFS_KgtP, Alpha-ketoglutarate permease of the Major Facilitator Superfamily of transporters	NA|160aa|down_6|NZ_CP013210.1_1196001_1196481_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|336aa|down_7|NZ_CP013210.1_1196495_1197503_+	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional	NA|140aa|down_8|NZ_CP013210.1_1197567_1197987_-	NA	NA|171aa|down_9|NZ_CP013210.1_1198035_1198548_-	NA
GCF_009834475.1_ASM983447v1	NZ_CP013210	Empedobacter brevis strain BCLYD2 chromosome, complete genome	3	1234279-1234438	1	PILER-CR	no		DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	Orphan	TGTTCCAACCCCATCCGAAACCACCTCCATACCATGGATTATACCA	46	0	0	NA	NA	NA	2	2	Orphan	DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	NA|137aa|up_9|NZ_CP013210.1_1226603_1227014_+,NA|137aa|up_8|NZ_CP013210.1_1227013_1227424_+,NA|134aa|up_7|NZ_CP013210.1_1227431_1227833_+,NA|133aa|up_6|NZ_CP013210.1_1227840_1228239_+,NA|134aa|up_5|NZ_CP013210.1_1228253_1228655_+,NA|110aa|down_1|NZ_CP013210.1_1236571_1236901_-,NA|135aa|down_7|NZ_CP013210.1_1241920_1242325_-	NA|137aa|up_9|NZ_CP013210.1_1226603_1227014_+	NA	NA|137aa|up_8|NZ_CP013210.1_1227013_1227424_+	NA	NA|134aa|up_7|NZ_CP013210.1_1227431_1227833_+	NA	NA|133aa|up_6|NZ_CP013210.1_1227840_1228239_+	NA	NA|134aa|up_5|NZ_CP013210.1_1228253_1228655_+	NA	NA|158aa|up_4|NZ_CP013210.1_1228706_1229180_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|177aa|up_3|NZ_CP013210.1_1229335_1229866_+	COG5395, COG5395, Predicted membrane protein [Function unknown]	NA|178aa|up_2|NZ_CP013210.1_1229900_1230434_-	PRK11281, PRK11281, mechanosensitive channel MscK	NA|253aa|up_1|NZ_CP013210.1_1231322_1232081_+	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|465aa|up_0|NZ_CP013210.1_1232168_1233563_-	COG2067, FadL, Long-chain fatty acid transport protein [Lipid metabolism]	NA|493aa|down_0|NZ_CP013210.1_1235054_1236533_+	PRK08661, PRK08661, prolyl-tRNA synthetase; Provisional	NA|110aa|down_1|NZ_CP013210.1_1236571_1236901_-	NA	NA|836aa|down_2|NZ_CP013210.1_1237137_1239645_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|129aa|down_3|NZ_CP013210.1_1239722_1240109_-	pfam01741, MscL, Large-conductance mechanosensitive channel, MscL	NA|299aa|down_4|NZ_CP013210.1_1240138_1241035_-	PRK00052, PRK00052, prolipoprotein diacylglyceryl transferase; Reviewed	NA|78aa|down_5|NZ_CP013210.1_1241034_1241268_-	pfam01809, Haemolytic, Haemolytic domain	NA|169aa|down_6|NZ_CP013210.1_1241356_1241863_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|135aa|down_7|NZ_CP013210.1_1241920_1242325_-	NA	NA|427aa|down_8|NZ_CP013210.1_1242438_1243719_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|140aa|down_9|NZ_CP013210.1_1243932_1244352_+	pfam01220, DHquinase_II, Dehydroquinase class II
GCF_009834475.1_ASM983447v1	NZ_CP013210	Empedobacter brevis strain BCLYD2 chromosome, complete genome	4	2079076-2079163	2	CRISPRCasFinder	no		DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	Orphan	TTTTGGTTTCGGTTGTTATTATTTTGAT	28	0	0	NA	NA	NA	1	1	Orphan	DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	NA|176aa|up_8|NZ_CP013210.1_2070263_2070791_+,NA|166aa|up_7|NZ_CP013210.1_2070818_2071316_+,NA|186aa|down_1|NZ_CP013210.1_2081401_2081959_-,NA|1038aa|down_6|NZ_CP013210.1_2088168_2091282_+,NA|126aa|down_9|NZ_CP013210.1_2096280_2096658_+	NA|403aa|up_9|NZ_CP013210.1_2068888_2070097_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|176aa|up_8|NZ_CP013210.1_2070263_2070791_+	NA	NA|166aa|up_7|NZ_CP013210.1_2070818_2071316_+	NA	NA|350aa|up_6|NZ_CP013210.1_2071570_2072620_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|204aa|up_5|NZ_CP013210.1_2072613_2073225_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|351aa|up_4|NZ_CP013210.1_2073332_2074385_-	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|621aa|up_3|NZ_CP013210.1_2074394_2076257_-	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|246aa|up_2|NZ_CP013210.1_2076311_2077049_-	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|226aa|up_1|NZ_CP013210.1_2077045_2077723_-	PRK10847, PRK10847, DedA family protein	NA|437aa|up_0|NZ_CP013210.1_2077733_2079044_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|405aa|down_0|NZ_CP013210.1_2080103_2081318_-	pfam01266, DAO, FAD dependent oxidoreductase	NA|186aa|down_1|NZ_CP013210.1_2081401_2081959_-	NA	NA|294aa|down_2|NZ_CP013210.1_2082041_2082923_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|472aa|down_3|NZ_CP013210.1_2083042_2084458_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|513aa|down_4|NZ_CP013210.1_2084481_2086020_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|505aa|down_5|NZ_CP013210.1_2086650_2088165_+	TIGR04183, hypothetical_protein, Por secretion system C-terminal sorting domain	NA|1038aa|down_6|NZ_CP013210.1_2088168_2091282_+	NA	NA|1154aa|down_7|NZ_CP013210.1_2091293_2094755_+	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|286aa|down_8|NZ_CP013210.1_2095415_2096273_+	pfam15638, Tox-MPTase2, Metallopeptidase toxin 2	NA|126aa|down_9|NZ_CP013210.1_2096280_2096658_+	NA
GCF_009834475.1_ASM983447v1	NZ_CP013210	Empedobacter brevis strain BCLYD2 chromosome, complete genome	5	2659085-2660615	2,3,3	PILER-CR,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	 Type II-B,Type II-C, or Type II-C?,Type II-A,Type II-B	GTTGTGAGTTCCTTTCACTTTTAGTAATTTTACGTAAGTAGTTACAAC,GTTGTGAGTTCCTTTCACTTTTAGTAATTTTACGTAAGTAGTTACAAC,TGTTGTGAGTTCCTTTCACTTTTAGTAATTTTACGTAAGTAGTTACAACT	48,48,50	4	4	2660225-2660254|2660303-2660332|2660381-2660410|2660382-2660409	NZ_CP013210.1_1980227-1980256|NZ_CP013210.1_1993197-1993226|NZ_CP013210.1_1989174-1989203|NZ_CP013210.1_1989175-1989202	NA:NA:NA	17,19,17	19	TypeII-B,TypeII-C,orTypeII-C?,TypeII-A,TypeII-B	DEDDh,WYL,cas3,RT,PD-DExK,cas2,cas1,cas9	NA,NA|62aa|down_6|NZ_CP013210.1_2669002_2669188_+,NA|66aa|down_7|NZ_CP013210.1_2669688_2669886_+	NA|874aa|up_9|NZ_CP013210.1_2644995_2647617_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|122aa|up_8|NZ_CP013210.1_2647792_2648158_+	pfam07610, DUF1573, Protein of unknown function (DUF1573)	NA|219aa|up_7|NZ_CP013210.1_2648256_2648913_-	COG1321, TroR, Mn-dependent transcriptional regulator [Transcription]	NA|687aa|up_6|NZ_CP013210.1_2649018_2651079_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|149aa|up_5|NZ_CP013210.1_2651078_2651525_+	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|395aa|up_4|NZ_CP013210.1_2651579_2652764_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|333aa|up_3|NZ_CP013210.1_2653567_2654566_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|888aa|up_2|NZ_CP013210.1_2654553_2657217_+	PRK09490, metH, B12-dependent methionine synthase; Provisional	NA|319aa|up_1|NZ_CP013210.1_2657380_2658337_+	TIGR00676, 510-methylenetetrahydrofolate_reductase	NA|131aa|up_0|NZ_CP013210.1_2658481_2658874_-	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins	cas2|113aa|down_0|NZ_CP013210.1_2660728_2661067_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|297aa|down_1|NZ_CP013210.1_2661063_2661954_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1429aa|down_2|NZ_CP013210.1_2661965_2666252_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|323aa|down_3|NZ_CP013210.1_2666474_2667443_+	pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family	NA|293aa|down_4|NZ_CP013210.1_2667452_2668331_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|224aa|down_5|NZ_CP013210.1_2668334_2669006_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|62aa|down_6|NZ_CP013210.1_2669002_2669188_+	NA	NA|66aa|down_7|NZ_CP013210.1_2669688_2669886_+	NA	NA|759aa|down_8|NZ_CP013210.1_2670007_2672284_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|211aa|down_9|NZ_CP013210.1_2672280_2672913_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
