assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	1	4333-4449	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT	Orphan	TGCTGGTCGAGTAGCCGCGGAGCGGCGTATCGAGACCC	38	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA,NA|75aa|down_5|NZ_CP047173.1_12172_12397_-,NA|175aa|down_6|NZ_CP047173.1_12450_12975_-,NA|187aa|down_9|NZ_CP047173.1_14051_14612_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|475aa|up_2|NZ_CP047173.1_0_1425_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|384aa|up_1|NZ_CP047173.1_2014_3166_+	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated	NA|296aa|up_0|NZ_CP047173.1_3261_4149_+	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase	NA|409aa|down_0|NZ_CP047173.1_4497_5724_+	PRK00064, recF, recombination protein F; Reviewed	NA|172aa|down_1|NZ_CP047173.1_5716_6232_+	PRK03195, PRK03195, DUF721 family protein	NA|694aa|down_2|NZ_CP047173.1_6409_8491_+	PRK05644, gyrB, DNA gyrase subunit B; Validated	NA|868aa|down_3|NZ_CP047173.1_8714_11318_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|137aa|down_4|NZ_CP047173.1_11310_11721_+	pfam12089, DUF3566, Transmembrane domain of unknown function (DUF3566)	NA|75aa|down_5|NZ_CP047173.1_12172_12397_-	NA	NA|175aa|down_6|NZ_CP047173.1_12450_12975_-	NA	NA|88aa|down_7|NZ_CP047173.1_12979_13243_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|143aa|down_8|NZ_CP047173.1_13535_13964_-	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	NA|187aa|down_9|NZ_CP047173.1_14051_14612_-	NA
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	2	427354-427468	2	CRISPRCasFinder	no	csa3	csa3,DEDDh,cas3,WYL,RT	Type I-A	CGCACCCCACTCCTCCGAAGTTGCGGTAGTCG	32	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA|238aa|up_6|NZ_CP047173.1_417135_417849_-,NA	csa3|117aa|up_9|NZ_CP047173.1_414783_415134_-	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|440aa|up_8|NZ_CP047173.1_415222_416542_+	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase	NA|165aa|up_7|NZ_CP047173.1_416538_417033_+	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|238aa|up_6|NZ_CP047173.1_417135_417849_-	NA	NA|186aa|up_5|NZ_CP047173.1_418113_418671_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|569aa|up_4|NZ_CP047173.1_419369_421076_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|662aa|up_3|NZ_CP047173.1_421280_423266_+	pfam13520, AA_permease_2, Amino acid permease	NA|480aa|up_2|NZ_CP047173.1_423357_424797_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|294aa|up_1|NZ_CP047173.1_425057_425939_+	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region	NA|444aa|up_0|NZ_CP047173.1_425952_427284_-	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only]	NA|141aa|down_0|NZ_CP047173.1_427527_427950_-	pfam05025, RbsD_FucU, RbsD / FucU transport protein family	NA|329aa|down_1|NZ_CP047173.1_427960_428947_-	COG1609, PurR, Transcriptional regulators [Transcription]	NA|352aa|down_2|NZ_CP047173.1_428948_430004_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|550aa|down_3|NZ_CP047173.1_430095_431745_-	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase	NA|133aa|down_4|NZ_CP047173.1_432051_432450_-	pfam06150, ChaB, ChaB	NA|419aa|down_5|NZ_CP047173.1_432571_433828_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|227aa|down_6|NZ_CP047173.1_433914_434595_-	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|279aa|down_7|NZ_CP047173.1_434696_435533_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|319aa|down_8|NZ_CP047173.1_435501_436458_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|297aa|down_9|NZ_CP047173.1_436548_437439_+	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	3	467277-467413	3	CRISPRCasFinder	no	csa3	csa3,DEDDh,cas3,WYL,RT	Type I-A	GCGTGCCGGAGGTGTTCTCCGTCGGGTTTCGGCTCGCGGAGTCGA	45	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA|108aa|up_8|NZ_CP047173.1_457858_458182_+,NA|212aa|down_5|NZ_CP047173.1_476630_477266_+,NA|202aa|down_7|NZ_CP047173.1_478580_479186_-,NA|102aa|down_8|NZ_CP047173.1_479848_480154_+,NA|504aa|down_9|NZ_CP047173.1_480150_481662_+	NA|594aa|up_9|NZ_CP047173.1_455830_457612_-	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|108aa|up_8|NZ_CP047173.1_457858_458182_+	NA	NA|247aa|up_7|NZ_CP047173.1_458186_458927_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|306aa|up_6|NZ_CP047173.1_459101_460019_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|427aa|up_5|NZ_CP047173.1_460018_461299_-	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold	NA|319aa|up_4|NZ_CP047173.1_461391_462348_-	pfam01636, APH, Phosphotransferase enzyme family	NA|374aa|up_3|NZ_CP047173.1_462567_463689_-	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau	NA|488aa|up_2|NZ_CP047173.1_463910_465374_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|223aa|up_1|NZ_CP047173.1_465370_466039_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|145aa|up_0|NZ_CP047173.1_466197_466632_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|369aa|down_0|NZ_CP047173.1_470523_471630_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|266aa|down_1|NZ_CP047173.1_471626_472424_-	cd03142, GATase1_ThuA, Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA)	NA|334aa|down_2|NZ_CP047173.1_472519_473521_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|296aa|down_3|NZ_CP047173.1_473562_474450_-	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold	NA|429aa|down_4|NZ_CP047173.1_474992_476279_-	PRK02813, PRK02813, putative aminopeptidase 2; Provisional	NA|212aa|down_5|NZ_CP047173.1_476630_477266_+	NA	NA|365aa|down_6|NZ_CP047173.1_477255_478350_+	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism]	NA|202aa|down_7|NZ_CP047173.1_478580_479186_-	NA	NA|102aa|down_8|NZ_CP047173.1_479848_480154_+	NA	NA|504aa|down_9|NZ_CP047173.1_480150_481662_+	NA
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	4	902782-902924	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT	Orphan	TGCTGGTCGAGTAGCCCGCGCAGCGGGCGTATCGAGACCCAC	42	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA,NA	NA|445aa|up_9|NZ_CP047173.1_889378_890713_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|829aa|up_8|NZ_CP047173.1_891687_894174_-	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain	NA|330aa|up_7|NZ_CP047173.1_894651_895641_+	COG1609, PurR, Transcriptional regulators [Transcription]	NA|35aa|up_6|NZ_CP047173.1_895771_895876_-	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component	NA|270aa|up_5|NZ_CP047173.1_896099_896909_-	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|203aa|up_4|NZ_CP047173.1_897077_897686_+	cd16361, VOC_ShValD_like, vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein	NA|281aa|up_3|NZ_CP047173.1_897737_898580_-	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins	NA|315aa|up_2|NZ_CP047173.1_898699_899644_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|409aa|up_1|NZ_CP047173.1_899701_900928_+	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|525aa|up_0|NZ_CP047173.1_901037_902612_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|133aa|down_0|NZ_CP047173.1_902959_903358_+	pfam05610, DUF779, Protein of unknown function (DUF779)	NA|161aa|down_1|NZ_CP047173.1_903449_903932_+	pfam14342, DUF4396, Domain of unknown function (DUF4396)	NA|272aa|down_2|NZ_CP047173.1_903999_904815_-	PRK11633, PRK11633, cell division protein DedD; Provisional	NA|199aa|down_3|NZ_CP047173.1_904811_905408_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|780aa|down_4|NZ_CP047173.1_905499_907839_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|815aa|down_5|NZ_CP047173.1_908046_910491_-	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane]	NA|312aa|down_6|NZ_CP047173.1_910828_911764_+	TIGR01136, Cysteine_synthase, cysteine synthase	NA|201aa|down_7|NZ_CP047173.1_911760_912363_+	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|490aa|down_8|NZ_CP047173.1_912423_913893_-	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair]	NA|127aa|down_9|NZ_CP047173.1_913978_914359_-	COG1846, MarR, Transcriptional regulators [Transcription]
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	5	1301165-1301311	5	CRISPRCasFinder	no	cas3	csa3,DEDDh,cas3,WYL,RT	Unclear	GGCTCGCTGGATCCGGCGATTTCCGCGTGCCGGAGGTGGTTCCGCGTGCCGGAGT	55	0	0	NA	NA	NA	1	1	Unclear	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA|261aa|up_6|NZ_CP047173.1_1293427_1294210_-,NA|106aa|down_3|NZ_CP047173.1_1304541_1304859_-	NA|146aa|up_9|NZ_CP047173.1_1291184_1291622_-	pfam06877, RraB, Regulator of ribonuclease activity B	NA|264aa|up_8|NZ_CP047173.1_1291618_1292410_-	PRK06563, PRK06563, crotonase/enoyl-CoA hydratase family protein	NA|278aa|up_7|NZ_CP047173.1_1292534_1293368_-	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family	NA|261aa|up_6|NZ_CP047173.1_1293427_1294210_-	NA	NA|251aa|up_5|NZ_CP047173.1_1294290_1295043_+	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|509aa|up_4|NZ_CP047173.1_1295065_1296592_-	cd01087, Prolidase, Prolidase	NA|341aa|up_3|NZ_CP047173.1_1296658_1297681_-	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family	NA|281aa|up_2|NZ_CP047173.1_1297744_1298587_+	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	cas3|482aa|up_1|NZ_CP047173.1_1298787_1300233_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|240aa|up_0|NZ_CP047173.1_1300386_1301106_+	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like	NA|224aa|down_0|NZ_CP047173.1_1301531_1302203_-	COG1802, GntR, Transcriptional regulators [Transcription]	NA|428aa|down_1|NZ_CP047173.1_1302498_1303782_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|229aa|down_2|NZ_CP047173.1_1303778_1304465_+	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism]	NA|106aa|down_3|NZ_CP047173.1_1304541_1304859_-	NA	NA|75aa|down_4|NZ_CP047173.1_1304880_1305105_-	pfam11305, DUF3107, Protein of unknown function (DUF3107)	NA|1078aa|down_5|NZ_CP047173.1_1308538_1311772_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|356aa|down_6|NZ_CP047173.1_1311708_1312776_-	cd05152, MPH2', Macrolide 2'-Phosphotransferase	NA|316aa|down_7|NZ_CP047173.1_1312936_1313884_+	PRK00241, nudC, NAD(+) diphosphatase	NA|571aa|down_8|NZ_CP047173.1_1313880_1315593_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|268aa|down_9|NZ_CP047173.1_1315513_1316317_-	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	6	1547884-1547977	6	CRISPRCasFinder	no	WYL	csa3,DEDDh,cas3,WYL,RT	Unclear	GCCGTTGCGCGGATACTCGACCAGCA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA|201aa|up_9|NZ_CP047173.1_1531907_1532510_-,NA|232aa|up_8|NZ_CP047173.1_1532536_1533232_-,NA|52aa|up_6|NZ_CP047173.1_1540903_1541059_+,NA|486aa|down_9|NZ_CP047173.1_1556755_1558213_-	NA|201aa|up_9|NZ_CP047173.1_1531907_1532510_-	NA	NA|232aa|up_8|NZ_CP047173.1_1532536_1533232_-	NA	NA|437aa|up_7|NZ_CP047173.1_1533334_1534645_+	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|52aa|up_6|NZ_CP047173.1_1540903_1541059_+	NA	NA|271aa|up_5|NZ_CP047173.1_1541055_1541868_+	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]	NA|308aa|up_4|NZ_CP047173.1_1541915_1542839_+	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional	NA|563aa|up_3|NZ_CP047173.1_1542844_1544533_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|588aa|up_2|NZ_CP047173.1_1544566_1546330_+	PRK05380, pyrG, CTP synthetase; Validated	NA|213aa|up_1|NZ_CP047173.1_1546322_1546961_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|303aa|up_0|NZ_CP047173.1_1546957_1547866_+	PRK00283, xerD, tyrosine recombinase	NA|296aa|down_0|NZ_CP047173.1_1548076_1548964_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|281aa|down_1|NZ_CP047173.1_1548947_1549790_+	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication,    recombination, and repair]	NA|199aa|down_2|NZ_CP047173.1_1549779_1550376_+	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB	NA|391aa|down_3|NZ_CP047173.1_1550362_1551535_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|358aa|down_4|NZ_CP047173.1_1551577_1552651_+	PRK06545, PRK06545, prephenate dehydrogenase; Validated	NA|266aa|down_5|NZ_CP047173.1_1552689_1553487_+	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed	NA|507aa|down_6|NZ_CP047173.1_1553461_1554982_+	PRK03003, PRK03003, GTP-binding protein Der; Reviewed	NA|189aa|down_7|NZ_CP047173.1_1555576_1556143_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|87aa|down_8|NZ_CP047173.1_1556485_1556746_-	cd10035, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily	NA|486aa|down_9|NZ_CP047173.1_1556755_1558213_-	NA
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	7	1586300-1586433	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT	Orphan	GCGAGCCGGAGGTGTGGGGGCCGCGGGTTCGGCTCGTGAAA	41	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA,NA	NA|239aa|up_9|NZ_CP047173.1_1575429_1576146_-	pfam14016, DUF4232, Protein of unknown function (DUF4232)	NA|245aa|up_8|NZ_CP047173.1_1576215_1576950_-	COG2186, FadR, Transcriptional regulators [Transcription]	NA|458aa|up_7|NZ_CP047173.1_1577135_1578509_+	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease	NA|167aa|up_6|NZ_CP047173.1_1580386_1580887_+	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase	NA|252aa|up_5|NZ_CP047173.1_1580937_1581693_+	cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate	NA|247aa|up_4|NZ_CP047173.1_1581770_1582511_+	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel	NA|297aa|up_3|NZ_CP047173.1_1582507_1583398_+	pfam16896, PGDH_C, Phosphogluconate dehydrogenase (decarboxylating) C-term	NA|337aa|up_2|NZ_CP047173.1_1583875_1584886_-	cd05288, PGDH, Prostaglandin dehydrogenases	NA|130aa|up_1|NZ_CP047173.1_1584917_1585307_-	pfam06993, DUF1304, Protein of unknown function (DUF1304)	NA|194aa|up_0|NZ_CP047173.1_1585423_1586005_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|479aa|down_0|NZ_CP047173.1_1586744_1588181_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|440aa|down_1|NZ_CP047173.1_1588357_1589677_+	smart00108, B_lectin, Bulb-type mannose-specific lectin	NA|222aa|down_2|NZ_CP047173.1_1589981_1590647_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|503aa|down_3|NZ_CP047173.1_1590760_1592269_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|298aa|down_4|NZ_CP047173.1_1592408_1593302_+	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional	NA|391aa|down_5|NZ_CP047173.1_1593752_1594925_+	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite	NA|397aa|down_6|NZ_CP047173.1_1594921_1596112_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|563aa|down_7|NZ_CP047173.1_1596183_1597872_+	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|333aa|down_8|NZ_CP047173.1_1597913_1598912_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|299aa|down_9|NZ_CP047173.1_1598908_1599805_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	8	2748130-2748218	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT	Orphan	GCGAACGGGTTGTTGCCCGGGCGCGG	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA|155aa|up_7|NZ_CP047173.1_2738845_2739310_-,NA|123aa|up_6|NZ_CP047173.1_2739420_2739789_-,NA	NA|516aa|up_9|NZ_CP047173.1_2736240_2737788_-	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	NA|315aa|up_8|NZ_CP047173.1_2737901_2738846_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase	NA|155aa|up_7|NZ_CP047173.1_2738845_2739310_-	NA	NA|123aa|up_6|NZ_CP047173.1_2739420_2739789_-	NA	NA|314aa|up_5|NZ_CP047173.1_2739785_2740727_-	PRK03287, truB, tRNA pseudouridine synthase B; Provisional	NA|333aa|up_4|NZ_CP047173.1_2740817_2741816_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|200aa|up_3|NZ_CP047173.1_2741877_2742477_-	PRK06696, PRK06696, uridine kinase; Validated	NA|293aa|up_2|NZ_CP047173.1_2742528_2743407_+	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|474aa|up_1|NZ_CP047173.1_2743453_2744875_+	COG0557, VacB, Exoribonuclease R [Transcription]	NA|152aa|up_0|NZ_CP047173.1_2744871_2745327_-	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|111aa|down_0|NZ_CP047173.1_2748889_2749222_-	pfam04296, DUF448, Protein of unknown function (DUF448)	NA|334aa|down_1|NZ_CP047173.1_2749272_2750274_-	PRK12327, nusA, transcription elongation factor NusA; Provisional	NA|588aa|down_2|NZ_CP047173.1_2750433_2752197_-	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional	NA|386aa|down_3|NZ_CP047173.1_2752288_2753446_-	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA|463aa|down_4|NZ_CP047173.1_2754139_2755528_-	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|361aa|down_5|NZ_CP047173.1_2755611_2756694_-	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional	NA|322aa|down_6|NZ_CP047173.1_2756747_2757713_-	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase	NA|445aa|down_7|NZ_CP047173.1_2757883_2759218_+	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase	NA|252aa|down_8|NZ_CP047173.1_2759354_2760110_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|159aa|down_9|NZ_CP047173.1_2760125_2760602_-	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism]
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	9	2820012-2820095	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT	Orphan	CCGTGCTGGTCGAGGAGGCGCCG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA,NA|175aa|down_7|NZ_CP047173.1_2830407_2830932_+	NA|351aa|up_9|NZ_CP047173.1_2809939_2810992_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|367aa|up_8|NZ_CP047173.1_2811003_2812104_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|538aa|up_7|NZ_CP047173.1_2812127_2813741_-	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|358aa|up_6|NZ_CP047173.1_2813737_2814811_-	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH	NA|178aa|up_5|NZ_CP047173.1_2814807_2815341_-	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism]	NA|318aa|up_4|NZ_CP047173.1_2815424_2816378_-	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs	NA|80aa|up_3|NZ_CP047173.1_2816827_2817067_+	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD)	NA|313aa|up_2|NZ_CP047173.1_2817063_2818002_+	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase	NA|289aa|up_1|NZ_CP047173.1_2818014_2818881_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|361aa|up_0|NZ_CP047173.1_2818886_2819969_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|851aa|down_0|NZ_CP047173.1_2820175_2822728_-	PRK12678, PRK12678, transcription termination factor Rho; Provisional	NA|323aa|down_1|NZ_CP047173.1_2822913_2823882_-	PRK01212, PRK01212, homoserine kinase; Provisional	NA|359aa|down_2|NZ_CP047173.1_2823878_2824955_-	PRK07409, PRK07409, threonine synthase; Validated	NA|447aa|down_3|NZ_CP047173.1_2824956_2826297_-	PRK06349, PRK06349, homoserine dehydrogenase; Provisional	NA|477aa|down_4|NZ_CP047173.1_2826293_2827724_-	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase	NA|259aa|down_5|NZ_CP047173.1_2827912_2828689_-	pfam11209, DUF2993, Protein of unknown function (DUF2993)	NA|553aa|down_6|NZ_CP047173.1_2828685_2830344_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|175aa|down_7|NZ_CP047173.1_2830407_2830932_+	NA	NA|265aa|down_8|NZ_CP047173.1_2830976_2831771_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|264aa|down_9|NZ_CP047173.1_2832430_2833222_-	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family
GCF_009834185.1_ASM983418v1	NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	10	3066970-3067111	10	CRISPRCasFinder	no		csa3,DEDDh,cas3,WYL,RT	Orphan	TTCCACGAGCCGAAGCTTCCGCGGGCCTCCCTCCGGCTCGCGAAAACACC	50	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,WYL,RT,PD-DExK	NA|1136aa|up_6|NZ_CP047173.1_3057238_3060646_-,NA|63aa|down_9|NZ_CP047173.1_3077229_3077418_-	NA|437aa|up_9|NZ_CP047173.1_3052939_3054250_-	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only]	NA|507aa|up_8|NZ_CP047173.1_3054246_3055767_-	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]	NA|362aa|up_7|NZ_CP047173.1_3055925_3057011_-	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea	NA|1136aa|up_6|NZ_CP047173.1_3057238_3060646_-	NA	NA|378aa|up_5|NZ_CP047173.1_3060789_3061923_-	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose	NA|375aa|up_4|NZ_CP047173.1_3062011_3063136_+	cd03814, GT4-like, glycosyltransferase family 4 proteins	NA|145aa|up_3|NZ_CP047173.1_3063274_3063709_+	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|148aa|up_2|NZ_CP047173.1_3063705_3064149_+	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol	NA|613aa|up_1|NZ_CP047173.1_3064195_3066034_+	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|254aa|up_0|NZ_CP047173.1_3066036_3066798_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|291aa|down_0|NZ_CP047173.1_3067154_3068027_+	pfam18741, MTES_1575, REase_MTES_1575	NA|383aa|down_1|NZ_CP047173.1_3069024_3070173_+	pfam03631, Virul_fac_BrkB, Virulence factor BrkB	NA|254aa|down_2|NZ_CP047173.1_3070361_3071123_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|320aa|down_3|NZ_CP047173.1_3071119_3072079_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|151aa|down_4|NZ_CP047173.1_3072075_3072528_+	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2	NA|610aa|down_5|NZ_CP047173.1_3072524_3074354_+	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional	NA|278aa|down_6|NZ_CP047173.1_3074516_3075350_+	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases	NA|342aa|down_7|NZ_CP047173.1_3075402_3076428_+	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed	NA|242aa|down_8|NZ_CP047173.1_3076435_3077161_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|63aa|down_9|NZ_CP047173.1_3077229_3077418_-	NA
