assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009833025.1_ASM983302v1	NZ_CP046407	Aeromonas veronii strain A8-AHP chromosome, complete genome	1	336391-336639	1	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,PrimPol	Orphan	GTATCGCAAGGACGGACCTCGGG	23	0	0	NA	NA	NA	4	4	Orphan	WYL,cas3,DEDDh,csa3,DinG,PrimPol	NA|588aa|up_9|NZ_CP046407.1_329011_330775_-,NA|67aa|up_7|NZ_CP046407.1_331353_331554_-,NA|71aa|up_6|NZ_CP046407.1_331553_331766_-,NA|168aa|up_5|NZ_CP046407.1_331823_332327_-,NA|195aa|up_4|NZ_CP046407.1_332437_333022_-,NA|75aa|up_3|NZ_CP046407.1_333021_333246_-,NA|133aa|down_3|NZ_CP046407.1_340158_340557_-,NA|70aa|down_4|NZ_CP046407.1_340823_341033_-,NA|185aa|down_5|NZ_CP046407.1_341029_341584_-	NA|588aa|up_9|NZ_CP046407.1_329011_330775_-	NA	NA|157aa|up_8|NZ_CP046407.1_330886_331357_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|67aa|up_7|NZ_CP046407.1_331353_331554_-	NA	NA|71aa|up_6|NZ_CP046407.1_331553_331766_-	NA	NA|168aa|up_5|NZ_CP046407.1_331823_332327_-	NA	NA|195aa|up_4|NZ_CP046407.1_332437_333022_-	NA	NA|75aa|up_3|NZ_CP046407.1_333021_333246_-	NA	NA|362aa|up_2|NZ_CP046407.1_333450_334536_-	PHA00201, PHA00201, major capsid protein	NA|268aa|up_1|NZ_CP046407.1_335055_335859_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|91aa|up_0|NZ_CP046407.1_335958_336231_-	pfam13384, HTH_23, Homeodomain-like domain	NA|190aa|down_0|NZ_CP046407.1_338084_338654_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|71aa|down_1|NZ_CP046407.1_338667_338880_-	pfam05321, HHA, Haemolysin expression modulating protein	NA|229aa|down_2|NZ_CP046407.1_339074_339761_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|133aa|down_3|NZ_CP046407.1_340158_340557_-	NA	NA|70aa|down_4|NZ_CP046407.1_340823_341033_-	NA	NA|185aa|down_5|NZ_CP046407.1_341029_341584_-	NA	NA|448aa|down_6|NZ_CP046407.1_341662_343006_+	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|419aa|down_7|NZ_CP046407.1_343093_344350_-	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated	NA|86aa|down_8|NZ_CP046407.1_344368_344626_-	COG5007, COG5007, Predicted transcriptional regulator, BolA superfamily [Transcription]	NA|91aa|down_9|NZ_CP046407.1_344625_344898_-	pfam13466, STAS_2, STAS domain
GCF_009833025.1_ASM983302v1	NZ_CP046407	Aeromonas veronii strain A8-AHP chromosome, complete genome	2	926830-926930	2	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,PrimPol	Orphan	CTACCAGAGAAGTACCATCCCCTTCCGG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,PrimPol	NA|95aa|up_5|NZ_CP046407.1_921187_921472_-,NA	NA|238aa|up_9|NZ_CP046407.1_916000_916714_+	PRK10766, PRK10766, two-component system response regulator TorR	NA|135aa|up_8|NZ_CP046407.1_916750_917155_-	COG3791, COG3791, Uncharacterized conserved protein [Function unknown]	NA|349aa|up_7|NZ_CP046407.1_917192_918239_-	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional	NA|942aa|up_6|NZ_CP046407.1_918309_921135_+	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|95aa|up_5|NZ_CP046407.1_921187_921472_-	NA	NA|418aa|up_4|NZ_CP046407.1_921796_923050_+	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|150aa|up_3|NZ_CP046407.1_923200_923650_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|370aa|up_2|NZ_CP046407.1_923747_924857_+	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA|218aa|up_1|NZ_CP046407.1_924912_925566_+	PRK09289, PRK09289, riboflavin synthase	NA|370aa|up_0|NZ_CP046407.1_925715_926825_+	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA|157aa|down_0|NZ_CP046407.1_927101_927572_+	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional	NA|138aa|down_1|NZ_CP046407.1_927586_928000_+	PRK00202, nusB, transcription antitermination factor NusB	NA|320aa|down_2|NZ_CP046407.1_928057_929017_+	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional	NA|165aa|down_3|NZ_CP046407.1_929013_929508_+	PRK11068, PRK11068, phosphatidylglycerophosphatase A; Provisional	NA|575aa|down_4|NZ_CP046407.1_929995_931720_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|519aa|down_5|NZ_CP046407.1_931790_933347_+	cd08498, PBP2_NikA_DppA_OppA_like_2, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold	NA|325aa|down_6|NZ_CP046407.1_933446_934421_+	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|314aa|down_7|NZ_CP046407.1_934425_935367_+	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism]	NA|72aa|down_8|NZ_CP046407.1_935494_935710_-	pfam04102, SlyX, SlyX	NA|323aa|down_9|NZ_CP046407.1_935724_936693_-	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment
GCF_009833025.1_ASM983302v1	NZ_CP046407	Aeromonas veronii strain A8-AHP chromosome, complete genome	3	1113410-1113658	3	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,PrimPol	Orphan	GTATCGCAAGGACGGACCTCGGG	23	0	0	NA	NA	NA	4	4	Orphan	WYL,cas3,DEDDh,csa3,DinG,PrimPol	NA|67aa|up_8|NZ_CP046407.1_1107686_1107887_-,NA|71aa|up_7|NZ_CP046407.1_1107886_1108099_-,NA|168aa|up_6|NZ_CP046407.1_1108156_1108660_-,NA|195aa|up_5|NZ_CP046407.1_1108770_1109355_-,NA|77aa|up_3|NZ_CP046407.1_1110015_1110246_-,NA|133aa|down_3|NZ_CP046407.1_1117176_1117575_-,NA|70aa|down_4|NZ_CP046407.1_1117841_1118051_-,NA|99aa|down_7|NZ_CP046407.1_1119418_1119715_-	NA|157aa|up_9|NZ_CP046407.1_1107219_1107690_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|67aa|up_8|NZ_CP046407.1_1107686_1107887_-	NA	NA|71aa|up_7|NZ_CP046407.1_1107886_1108099_-	NA	NA|168aa|up_6|NZ_CP046407.1_1108156_1108660_-	NA	NA|195aa|up_5|NZ_CP046407.1_1108770_1109355_-	NA	NA|219aa|up_4|NZ_CP046407.1_1109354_1110011_-	pfam09669, Phage_pRha, Phage regulatory protein Rha (Phage_pRha)	NA|77aa|up_3|NZ_CP046407.1_1110015_1110246_-	NA	NA|362aa|up_2|NZ_CP046407.1_1110469_1111555_-	PHA00201, PHA00201, major capsid protein	NA|268aa|up_1|NZ_CP046407.1_1112074_1112878_-	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators	NA|91aa|up_0|NZ_CP046407.1_1112977_1113250_-	pfam13384, HTH_23, Homeodomain-like domain	NA|190aa|down_0|NZ_CP046407.1_1115103_1115673_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|71aa|down_1|NZ_CP046407.1_1115686_1115899_-	pfam05321, HHA, Haemolysin expression modulating protein	NA|229aa|down_2|NZ_CP046407.1_1116093_1116780_-	pfam07275, ArdA, Antirestriction protein (ArdA)	NA|133aa|down_3|NZ_CP046407.1_1117176_1117575_-	NA	NA|70aa|down_4|NZ_CP046407.1_1117841_1118051_-	NA	NA|185aa|down_5|NZ_CP046407.1_1118047_1118602_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|256aa|down_6|NZ_CP046407.1_1118647_1119415_-	pfam10071, DUF2310, Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)	NA|99aa|down_7|NZ_CP046407.1_1119418_1119715_-	NA	NA|79aa|down_8|NZ_CP046407.1_1119798_1120035_-	pfam10982, DUF2789, Protein of unknown function (DUF2789)	NA|100aa|down_9|NZ_CP046407.1_1120109_1120409_-	pfam11743, DUF3301, Protein of unknown function (DUF3301)
GCF_009833025.1_ASM983302v1	NZ_CP046407	Aeromonas veronii strain A8-AHP chromosome, complete genome	4	1764372-1764525	4	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,PrimPol	Orphan	CCAAGGTGGCTTCAGGTCGTCCTCGGG	27	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,DEDDh,csa3,DinG,PrimPol	NA|81aa|up_8|NZ_CP046407.1_1758918_1759161_+,NA|67aa|up_6|NZ_CP046407.1_1759727_1759928_-,NA|72aa|up_5|NZ_CP046407.1_1759924_1760140_-,NA|168aa|up_4|NZ_CP046407.1_1760197_1760701_-,NA|195aa|up_3|NZ_CP046407.1_1760807_1761392_-,NA|75aa|up_2|NZ_CP046407.1_1761391_1761616_-,NA|74aa|up_0|NZ_CP046407.1_1763532_1763754_-,NA|336aa|down_2|NZ_CP046407.1_1767530_1768538_+,NA|99aa|down_3|NZ_CP046407.1_1768611_1768908_-,NA|70aa|down_4|NZ_CP046407.1_1769189_1769399_-,NA|185aa|down_5|NZ_CP046407.1_1769395_1769950_-,NA|131aa|down_7|NZ_CP046407.1_1771551_1771944_-	NA|242aa|up_9|NZ_CP046407.1_1757951_1758677_-	pfam04383, KilA-N, KilA-N domain	NA|81aa|up_8|NZ_CP046407.1_1758918_1759161_+	NA	NA|157aa|up_7|NZ_CP046407.1_1759260_1759731_-	cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in prokaryotes	NA|67aa|up_6|NZ_CP046407.1_1759727_1759928_-	NA	NA|72aa|up_5|NZ_CP046407.1_1759924_1760140_-	NA	NA|168aa|up_4|NZ_CP046407.1_1760197_1760701_-	NA	NA|195aa|up_3|NZ_CP046407.1_1760807_1761392_-	NA	NA|75aa|up_2|NZ_CP046407.1_1761391_1761616_-	NA	NA|362aa|up_1|NZ_CP046407.1_1761820_1762906_-	PHA00201, PHA00201, major capsid protein	NA|74aa|up_0|NZ_CP046407.1_1763532_1763754_-	NA	NA|191aa|down_0|NZ_CP046407.1_1766241_1766814_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|71aa|down_1|NZ_CP046407.1_1766827_1767040_-	PRK10945, PRK10945, hemolysin expression modulator Hha	NA|336aa|down_2|NZ_CP046407.1_1767530_1768538_+	NA	NA|99aa|down_3|NZ_CP046407.1_1768611_1768908_-	NA	NA|70aa|down_4|NZ_CP046407.1_1769189_1769399_-	NA	NA|185aa|down_5|NZ_CP046407.1_1769395_1769950_-	NA	NA|483aa|down_6|NZ_CP046407.1_1770026_1771475_+	PRK01269, PRK01269, tRNA s(4)U8 sulfurtransferase; Provisional	NA|131aa|down_7|NZ_CP046407.1_1771551_1771944_-	NA	NA|211aa|down_8|NZ_CP046407.1_1772044_1772677_-	PRK10578, PRK10578, hypothetical protein; Provisional	NA|287aa|down_9|NZ_CP046407.1_1774179_1775040_+	PRK12802, PRK12802, flagellin; Provisional
GCF_009833025.1_ASM983302v1	NZ_CP046407	Aeromonas veronii strain A8-AHP chromosome, complete genome	5	2302631-2302737	5	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,PrimPol	Orphan	ACCGGCTCGCCACAGTGAAAACAG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,PrimPol	NA,NA|154aa|down_5|NZ_CP046407.1_2306899_2307361_+	NA|257aa|up_9|NZ_CP046407.1_2291884_2292655_-	PRK09500, potC, spermidine/putrescine ABC transporter membrane protein; Reviewed	NA|296aa|up_8|NZ_CP046407.1_2292651_2293539_-	PRK09497, potB, spermidine/putrescine ABC transporter membrane protein; Reviewed	NA|368aa|up_7|NZ_CP046407.1_2293525_2294629_-	PRK09452, potA, spermidine/putrescine ABC transporter ATP-binding protein PotA	NA|255aa|up_6|NZ_CP046407.1_2294803_2295568_+	COG5473, COG5473, Predicted integral membrane protein [Function unknown]	NA|229aa|up_5|NZ_CP046407.1_2295584_2296271_+	pfam11205, DUF2987, Protein of unknown function (DUF2987)	NA|303aa|up_4|NZ_CP046407.1_2296374_2297283_-	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|316aa|up_3|NZ_CP046407.1_2297357_2298305_-	PRK11175, PRK11175, universal stress protein UspE; Provisional	NA|252aa|up_2|NZ_CP046407.1_2298456_2299212_-	PRK11161, PRK11161, fumarate/nitrate reduction transcriptional regulator Fnr	NA|229aa|up_1|NZ_CP046407.1_2299280_2299967_-	COG2836, COG2836, Uncharacterized conserved protein [Function unknown]	NA|63aa|up_0|NZ_CP046407.1_2299950_2300139_-	COG3197, FixS, Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]	NA|167aa|down_0|NZ_CP046407.1_2302748_2303249_-	pfam05751, FixH, FixH	NA|328aa|down_1|NZ_CP046407.1_2303389_2304373_-	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III	NA|60aa|down_2|NZ_CP046407.1_2304372_2304552_-	cd01324, cbb3_Oxidase_CcoQ, Cytochrome cbb oxidase CcoQ	NA|205aa|down_3|NZ_CP046407.1_2304562_2305177_-	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional	NA|475aa|down_4|NZ_CP046407.1_2305193_2306618_-	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional	NA|154aa|down_5|NZ_CP046407.1_2306899_2307361_+	NA	NA|153aa|down_6|NZ_CP046407.1_2307454_2307913_+	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms]	NA|213aa|down_7|NZ_CP046407.1_2308015_2308654_+	PRK04950, PRK04950, ProP expression regulator; Provisional	NA|672aa|down_8|NZ_CP046407.1_2308662_2310678_+	PRK11186, PRK11186, carboxy terminal-processing peptidase	NA|875aa|down_9|NZ_CP046407.1_2310821_2313446_+	PRK14015, pepN, aminopeptidase N; Provisional
GCF_009833025.1_ASM983302v1	NZ_CP046407	Aeromonas veronii strain A8-AHP chromosome, complete genome	6	3534208-3534320	6	CRISPRCasFinder	no		WYL,cas3,DEDDh,csa3,DinG,PrimPol	Orphan	GGGCCTGAAGCCAAGTTACTCCGTTGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,DEDDh,csa3,DinG,PrimPol	NA,NA	NA|305aa|up_9|NZ_CP046407.1_3523394_3524309_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|419aa|up_8|NZ_CP046407.1_3524479_3525736_+	smart00788, Adenylsucc_synt, Adenylosuccinate synthetase	NA|179aa|up_7|NZ_CP046407.1_3525933_3526470_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|267aa|up_6|NZ_CP046407.1_3526481_3527282_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|407aa|up_5|NZ_CP046407.1_3527408_3528628_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|184aa|up_4|NZ_CP046407.1_3528775_3529327_-	COG3945, COG3945, Uncharacterized conserved protein [Function unknown]	NA|226aa|up_3|NZ_CP046407.1_3529397_3530075_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|127aa|up_2|NZ_CP046407.1_3531253_3531634_+	TIGR04365, Autonomous_glycyl_radical_cofactor, autonomous glycyl radical cofactor GrcA	NA|427aa|up_1|NZ_CP046407.1_3531750_3533031_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|285aa|up_0|NZ_CP046407.1_3533332_3534187_-	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional	NA|267aa|down_0|NZ_CP046407.1_3534369_3535170_-	COG2912, COG2912, Uncharacterized conserved protein [Function unknown]	NA|128aa|down_1|NZ_CP046407.1_3535182_3535566_-	pfam04247, SirB, Invasion gene expression up-regulator, SirB	NA|284aa|down_2|NZ_CP046407.1_3535622_3536474_-	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific	NA|363aa|down_3|NZ_CP046407.1_3536535_3537624_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|420aa|down_4|NZ_CP046407.1_3537675_3538935_-	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|193aa|down_5|NZ_CP046407.1_3539061_3539640_+	cd16326, LolB, LolB, an outer membrane lipoprotein receptor	NA|283aa|down_6|NZ_CP046407.1_3539639_3540488_+	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|316aa|down_7|NZ_CP046407.1_3540851_3541799_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|663aa|down_8|NZ_CP046407.1_3541915_3543904_+	cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain	NA|199aa|down_9|NZ_CP046407.1_3544122_3544719_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional
