assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009832765.1_ASM983276v1	NZ_CP047121	Lactobacillus hilgardii strain FLUB chromosome, complete genome	1	658954-659095	1	CRISPRCasFinder	no		cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Orphan	ACTGTTACCTAGCCGAAACGTGCGCCAAAAAACAGCTCCCTGCCATATAAG	51	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA|93aa|up_8|NZ_CP047121.1_649752_650031_+,NA|149aa|up_7|NZ_CP047121.1_650686_651133_-,NA|285aa|up_0|NZ_CP047121.1_658089_658944_+,NA|160aa|down_6|NZ_CP047121.1_667733_668213_+,NA|123aa|down_9|NZ_CP047121.1_670648_671017_+	NA|282aa|up_9|NZ_CP047121.1_648910_649756_+	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues	NA|93aa|up_8|NZ_CP047121.1_649752_650031_+	NA	NA|149aa|up_7|NZ_CP047121.1_650686_651133_-	NA	NA|473aa|up_6|NZ_CP047121.1_651166_652585_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|283aa|up_5|NZ_CP047121.1_652732_653581_-	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins	NA|286aa|up_4|NZ_CP047121.1_653851_654709_+	PRK06182, PRK06182, short chain dehydrogenase; Validated	NA|263aa|up_3|NZ_CP047121.1_655708_656497_+	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated	NA|273aa|up_2|NZ_CP047121.1_656544_657363_+	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed	NA|219aa|up_1|NZ_CP047121.1_657362_658019_+	PRK00043, thiE, thiamine phosphate synthase	NA|285aa|up_0|NZ_CP047121.1_658089_658944_+	NA	NA|537aa|down_0|NZ_CP047121.1_659293_660904_+	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional	NA|264aa|down_1|NZ_CP047121.1_661216_662008_+	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|327aa|down_2|NZ_CP047121.1_662004_662985_+	pfam01032, FecCD, FecCD transport family	NA|334aa|down_3|NZ_CP047121.1_662981_663983_+	pfam01032, FecCD, FecCD transport family	NA|324aa|down_4|NZ_CP047121.1_663982_664954_+	cd01138, FeuA, Periplasmic binding protein FeuA	NA|646aa|down_5|NZ_CP047121.1_665395_667333_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|160aa|down_6|NZ_CP047121.1_667733_668213_+	NA	NA|139aa|down_7|NZ_CP047121.1_668309_668726_+	pfam02566, OsmC, OsmC-like protein	NA|541aa|down_8|NZ_CP047121.1_668791_670414_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|123aa|down_9|NZ_CP047121.1_670648_671017_+	NA
GCF_009832765.1_ASM983276v1	NZ_CP047121	Lactobacillus hilgardii strain FLUB chromosome, complete genome	2	2452102-2452992	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no	csn2,cas2,cas1,cas9	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	Type II-B,Type II-C,Type II-A	GGGTTTAACATCATTGATTTAACATCCTACTAAAGC,GGGTTTAACATCATTGATTTAACATCCTACTAAAGC,GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	36,36,36	1	1	2452596-2452625	NZ_CP047121.1_632638-632667	NA:NA:NA	13,12,11	13	TypeII-B,TypeII-C,TypeII-A	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|71aa|down_8|NZ_CP047121.1_2463221_2463434_-	NA|284aa|up_9|NZ_CP047121.1_2441859_2442711_-	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|460aa|up_8|NZ_CP047121.1_2442747_2444127_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|548aa|up_7|NZ_CP047121.1_2444139_2445783_-	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases	NA|267aa|up_6|NZ_CP047121.1_2445797_2446598_-	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]	NA|284aa|up_5|NZ_CP047121.1_2446599_2447451_-	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism]	NA|379aa|up_4|NZ_CP047121.1_2447519_2448656_-	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	NA|115aa|up_3|NZ_CP047121.1_2448661_2449006_-	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism]	NA|363aa|up_2|NZ_CP047121.1_2449049_2450138_-	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold	NA|254aa|up_1|NZ_CP047121.1_2450370_2451132_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|82aa|up_0|NZ_CP047121.1_2451332_2451578_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	csn2|227aa|down_0|NZ_CP047121.1_2453013_2453694_-	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|99aa|down_1|NZ_CP047121.1_2453690_2453987_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|302aa|down_2|NZ_CP047121.1_2453973_2454879_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1378aa|down_3|NZ_CP047121.1_2455092_2459226_-	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9	NA|132aa|down_4|NZ_CP047121.1_2459592_2459988_-	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase	NA|373aa|down_5|NZ_CP047121.1_2460408_2461527_-	cd08172, GlyDH-like, Glycerol_dehydrogenase-like	NA|265aa|down_6|NZ_CP047121.1_2461868_2462663_-	pfam12395, DUF3658, Protein of unknown function	NA|114aa|down_7|NZ_CP047121.1_2462785_2463127_+	pfam05656, DUF805, Protein of unknown function (DUF805)	NA|71aa|down_8|NZ_CP047121.1_2463221_2463434_-	NA	NA|259aa|down_9|NZ_CP047121.1_2463469_2464246_-	pfam08861, DUF1828, Domain of unknown function DUF1828
GCF_009832765.1_ASM983276v1	NZ_CP047122	Lactobacillus hilgardii strain FLUB plasmid unnamed1	1	425-582	1	CRISPRCasFinder	no			Orphan	AATCCCTTGGTATAAGCGGAACTGCAAAAAATGCAGTT	38	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|62aa|down_1|NZ_CP047122.1_1799_1985_+,NA|72aa|down_3|NZ_CP047122.1_2947_3163_-,NA|86aa|down_9|NZ_CP047122.1_11228_11486_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|89aa|down_0|NZ_CP047122.1_1511_1778_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|62aa|down_1|NZ_CP047122.1_1799_1985_+	NA	NA|227aa|down_2|NZ_CP047122.1_1981_2662_+	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown]	NA|72aa|down_3|NZ_CP047122.1_2947_3163_-	NA	NA|687aa|down_4|NZ_CP047122.1_3433_5494_+	pfam03389, MobA_MobL, MobA/MobL family	NA|235aa|down_5|NZ_CP047122.1_5613_6318_+	PRK07726, PRK07726, DNA topoisomerase 3	NA|264aa|down_6|NZ_CP047122.1_6213_7004_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|144aa|down_7|NZ_CP047122.1_7284_7716_+	TIGR02698, Uncharacterized_16	NA|732aa|down_8|NZ_CP047122.1_7966_10162_+	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase	NA|86aa|down_9|NZ_CP047122.1_11228_11486_-	NA
GCF_009832765.1_ASM983276v1	NZ_CP047123	Lactobacillus hilgardii strain FLUB plasmid unnamed2	1	425-582	1	CRISPRCasFinder	no	csa3	csa3	Type I-A	AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTT	38	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA,NA|105aa|down_1|NZ_CP047123.1_1841_2156_+,NA|93aa|down_2|NZ_CP047123.1_2145_2424_-,NA|70aa|down_3|NZ_CP047123.1_2446_2656_-	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|94aa|down_0|NZ_CP047123.1_1378_1660_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|105aa|down_1|NZ_CP047123.1_1841_2156_+	NA	NA|93aa|down_2|NZ_CP047123.1_2145_2424_-	NA	NA|70aa|down_3|NZ_CP047123.1_2446_2656_-	NA	NA|687aa|down_4|NZ_CP047123.1_2925_4986_+	pfam03389, MobA_MobL, MobA/MobL family	NA|139aa|down_5|NZ_CP047123.1_5176_5593_-	TIGR02691, Protein_ArsC, arsenate reductase (thioredoxin)	NA|112aa|down_6|NZ_CP047123.1_5615_5951_-	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD	NA|432aa|down_7|NZ_CP047123.1_5987_7283_-	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB	NA|578aa|down_8|NZ_CP047123.1_7325_9059_-	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase	csa3|108aa|down_9|NZ_CP047123.1_9106_9430_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors
GCF_009832765.1_ASM983276v1	NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	1	4448-4547	1	CRISPRCasFinder	no			Orphan	CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT	34	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA|217aa|up_3|NZ_CP047124.1_998_1649_-,NA|175aa|up_2|NZ_CP047124.1_1899_2424_-,NA|72aa|up_1|NZ_CP047124.1_2655_2871_-,NA|122aa|down_1|NZ_CP047124.1_6863_7229_+,NA|149aa|down_3|NZ_CP047124.1_12714_13161_+,NA|147aa|down_5|NZ_CP047124.1_14317_14758_-,NA|59aa|down_6|NZ_CP047124.1_14956_15133_-,NA|76aa|down_7|NZ_CP047124.1_16056_16284_-,NA|131aa|down_8|NZ_CP047124.1_21007_21400_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|272aa|up_4|NZ_CP047124.1_156_972_-	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]	NA|217aa|up_3|NZ_CP047124.1_998_1649_-	NA	NA|175aa|up_2|NZ_CP047124.1_1899_2424_-	NA	NA|72aa|up_1|NZ_CP047124.1_2655_2871_-	NA	NA|262aa|up_0|NZ_CP047124.1_2877_3663_-	pfam13614, AAA_31, AAA domain	NA|293aa|down_0|NZ_CP047124.1_5467_6346_+	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain	NA|122aa|down_1|NZ_CP047124.1_6863_7229_+	NA	NA|262aa|down_2|NZ_CP047124.1_9279_10066_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|down_3|NZ_CP047124.1_12714_13161_+	NA	NA|263aa|down_4|NZ_CP047124.1_13392_14180_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|147aa|down_5|NZ_CP047124.1_14317_14758_-	NA	NA|59aa|down_6|NZ_CP047124.1_14956_15133_-	NA	NA|76aa|down_7|NZ_CP047124.1_16056_16284_-	NA	NA|131aa|down_8|NZ_CP047124.1_21007_21400_+	NA	NA|262aa|down_9|NZ_CP047124.1_23423_24210_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)
GCF_009832765.1_ASM983276v1	NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	2	18596-18695	2	CRISPRCasFinder	no			Orphan	CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT	34	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA|122aa|up_6|NZ_CP047124.1_6863_7229_+,NA|149aa|up_4|NZ_CP047124.1_12714_13161_+,NA|147aa|up_2|NZ_CP047124.1_14317_14758_-,NA|59aa|up_1|NZ_CP047124.1_14956_15133_-,NA|76aa|up_0|NZ_CP047124.1_16056_16284_-,NA|131aa|down_0|NZ_CP047124.1_21007_21400_+	NA|262aa|up_9|NZ_CP047124.1_2877_3663_-	pfam13614, AAA_31, AAA domain	NA|332aa|up_8|NZ_CP047124.1_4062_5058_+	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain	NA|293aa|up_7|NZ_CP047124.1_5467_6346_+	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain	NA|122aa|up_6|NZ_CP047124.1_6863_7229_+	NA	NA|262aa|up_5|NZ_CP047124.1_9279_10066_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|149aa|up_4|NZ_CP047124.1_12714_13161_+	NA	NA|263aa|up_3|NZ_CP047124.1_13392_14180_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|147aa|up_2|NZ_CP047124.1_14317_14758_-	NA	NA|59aa|up_1|NZ_CP047124.1_14956_15133_-	NA	NA|76aa|up_0|NZ_CP047124.1_16056_16284_-	NA	NA|131aa|down_0|NZ_CP047124.1_21007_21400_+	NA	NA|262aa|down_1|NZ_CP047124.1_23423_24210_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|255aa|down_2|NZ_CP047124.1_27533_28299_-	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096)	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
GCF_009832765.1_ASM983276v1	NZ_CP047125	Lactobacillus hilgardii strain FLUB plasmid unnamed4	1	5201-5303	1	CRISPRCasFinder	no			Orphan	GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTG	37	0	0	NA	NA	NA	1	1	Orphan	cas14j,csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9	NA|141aa|up_4|NZ_CP047125.1_365_788_+,NA|263aa|up_3|NZ_CP047125.1_1010_1799_+,NA|142aa|up_1|NZ_CP047125.1_3034_3460_-,NA|60aa|up_0|NZ_CP047125.1_4205_4385_-,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|141aa|up_4|NZ_CP047125.1_365_788_+	NA	NA|263aa|up_3|NZ_CP047125.1_1010_1799_+	NA	NA|361aa|up_2|NZ_CP047125.1_1924_3007_-	pfam17312, Helveticin_J, Bacteriocin helveticin-J	NA|142aa|up_1|NZ_CP047125.1_3034_3460_-	NA	NA|60aa|up_0|NZ_CP047125.1_4205_4385_-	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
